RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
SLIRP-209ENST00000557342 CCDC180Q9P1Z9 1646 aa27.05■■□□□ 1.92
SLIRP-209ENST00000557342 ABCC9O60706 1549 aa26.37■■□□□ 1.81
SLIRP-209ENST00000557342 RB1CC1Q8TDY2 1594 aa25.44■■□□□ 1.66
SLIRP-209ENST00000557342 NACADO15069 1562 aa25.41■■□□□ 1.66
SLIRP-209ENST00000557342 DCAF8L2P0C7V8 631 aa25.31■■□□□ 1.64
SLIRP-209ENST00000557342 ZCCHC6Q5VYS8 1495 aaKnown RBP25.26■■□□□ 1.63
SLIRP-209ENST00000557342 MYO15BQ96JP2 1530 aa25.24■■□□□ 1.63
SLIRP-209ENST00000557342 DCAF1Q9Y4B6 1507 aa25.13■■□□□ 1.61
SLIRP-209ENST00000557342 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
SLIRP-209ENST00000557342 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
SLIRP-209ENST00000557342 SCRIBQ14160 1630 aa24.61■■□□□ 1.53
SLIRP-209ENST00000557342 PABPN1Q86U42 306 aaKnown RBP eCLIP24.6■■□□□ 1.53
SLIRP-209ENST00000557342 SHROOM4Q9ULL8 1493 aa24.42■■□□□ 1.5
SLIRP-209ENST00000557342 DNAJC5BQ9UF47 199 aa24.14■■□□□ 1.45
SLIRP-209ENST00000557342 EIF4G1Q04637 1599 aaKnown RBP23.99■■□□□ 1.43
SLIRP-209ENST00000557342 CC2D2AQ9P2K1 1620 aa23.9■■□□□ 1.42
SLIRP-209ENST00000557342 CECR2Q9BXF3 1484 aa23.71■■□□□ 1.39
SLIRP-209ENST00000557342 SMARCA4P51532 1647 aa23.56■■□□□ 1.36
SLIRP-209ENST00000557342 BAZ1AQ9NRL2 1556 aaPredicted RBP23.54■■□□□ 1.36
SLIRP-209ENST00000557342 SMARCA2P51531 1590 aa23.42■■□□□ 1.34
SLIRP-209ENST00000557342 NCAPD3P42695 1498 aa23.4■■□□□ 1.34
SLIRP-209ENST00000557342 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
SLIRP-209ENST00000557342 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
SLIRP-209ENST00000557342 PEG3Q9GZU2 1588 aa23.34■■□□□ 1.33
SLIRP-209ENST00000557342 HMGXB3Q12766 1538 aa23.31■■□□□ 1.32
SLIRP-209ENST00000557342 BAZ1BQ9UIG0 1483 aaKnown RBP23.23■■□□□ 1.31
SLIRP-209ENST00000557342 WIZO95785 1651 aa23.14■■□□□ 1.29
SLIRP-209ENST00000557342 RSF1Q96T23 1441 aaPredicted RBP23.07■■□□□ 1.28
SLIRP-209ENST00000557342 TOP2AP11388 1531 aaKnown RBP22.89■■□□□ 1.26
SLIRP-209ENST00000557342 LAMC3Q9Y6N6 1575 aa22.83■■□□□ 1.25
SLIRP-209ENST00000557342 NESP48681 1621 aa22.8■■□□□ 1.24
SLIRP-209ENST00000557342 ERCC6Q03468 1493 aa22.77■■□□□ 1.24
SLIRP-209ENST00000557342 CADPSQ9ULU8 1353 aa22.71■■□□□ 1.23
SLIRP-209ENST00000557342 PDS5BQ9NTI5 1447 aa22.65■■□□□ 1.22
SLIRP-209ENST00000557342 KIF21AQ7Z4S6 1674 aa22.62■■□□□ 1.21
SLIRP-209ENST00000557342 CCDC88BA6NC98 1476 aa22.59■■□□□ 1.21
SLIRP-209ENST00000557342 CFTRP13569 1480 aa22.57■■□□□ 1.2
SLIRP-209ENST00000557342 CUX2O14529 1486 aa22.54■■□□□ 1.2
SLIRP-209ENST00000557342 PRDM2Q13029 1718 aa22.54■■□□□ 1.2
SLIRP-209ENST00000557342 THOC2Q8NI27 1593 aaKnown RBP22.52■■□□□ 1.2
SLIRP-209ENST00000557342 SUPT5HO00267 1087 aaKnown RBP22.46■■□□□ 1.19
SLIRP-209ENST00000557342 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
SLIRP-209ENST00000557342 CEP164Q9UPV0 1460 aa22.45■■□□□ 1.18
SLIRP-209ENST00000557342 MRC2Q9UBG0 1479 aa22.41■■□□□ 1.18
SLIRP-209ENST00000557342 WDR62O43379 1518 aa22.34■■□□□ 1.17
SLIRP-209ENST00000557342 URB2Q14146 1524 aaKnown RBP22.21■■□□□ 1.15
SLIRP-209ENST00000557342 ABCC8Q09428 1581 aa22.15■■□□□ 1.14
SLIRP-209ENST00000557342 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
SLIRP-209ENST00000557342 TOPBP1Q92547 1522 aa22.1■■□□□ 1.13
SLIRP-209ENST00000557342 DNAJC5Q9H3Z4 198 aa22.09■■□□□ 1.13
SLIRP-209ENST00000557342 IFT140Q96RY7 1462 aa21.97■■□□□ 1.11
SLIRP-209ENST00000557342 CUX1P39880 1505 aa21.91■■□□□ 1.1
SLIRP-209ENST00000557342 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
SLIRP-209ENST00000557342 TARBP1Q13395 1621 aaKnown RBP21.88■■□□□ 1.09
SLIRP-209ENST00000557342 FGD5Q6ZNL6 1462 aa21.85■■□□□ 1.09
SLIRP-209ENST00000557342 ZNF608Q9ULD9 1512 aaPredicted RBP21.82■■□□□ 1.08
SLIRP-209ENST00000557342 SOGA1O94964 1423 aa21.81■■□□□ 1.08
SLIRP-209ENST00000557342 EIF4G3O43432 1585 aaKnown RBP21.8■■□□□ 1.08
SLIRP-209ENST00000557342 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
SLIRP-209ENST00000557342 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
SLIRP-209ENST00000557342 RAD54L2Q9Y4B4 1467 aa21.77■■□□□ 1.08
SLIRP-209ENST00000557342 WDR97A6NE52 1622 aa21.77■■□□□ 1.07
SLIRP-209ENST00000557342 TOP2BQ02880 1626 aa21.77■■□□□ 1.07
SLIRP-209ENST00000557342 SYNJ1O43426 1573 aa21.73■■□□□ 1.07
SLIRP-209ENST00000557342 AQRO60306 1485 aaKnown RBP eCLIP21.71■■□□□ 1.072e-9■□□□□ 10.8
SLIRP-209ENST00000557342 ABCA10Q8WWZ4 1543 aa21.65■■□□□ 1.06
SLIRP-209ENST00000557342 TDRD9Q8NDG6 1382 aaKnown RBP21.65■■□□□ 1.06
SLIRP-209ENST00000557342 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
SLIRP-209ENST00000557342 OSCARQ8IYS5 282 aa21.59■■□□□ 1.05
SLIRP-209ENST00000557342 ABCA5Q8WWZ7 1642 aa21.58■■□□□ 1.05
SLIRP-209ENST00000557342 GRIN2BQ13224 1484 aa21.58■■□□□ 1.04
SLIRP-209ENST00000557342 GAPVD1Q14C86 1478 aa21.58■■□□□ 1.04
SLIRP-209ENST00000557342 CHD1O14646 1710 aa21.57■■□□□ 1.04
SLIRP-209ENST00000557342 SNAPC4Q5SXM2 1469 aa21.53■■□□□ 1.04
SLIRP-209ENST00000557342 MAGI1Q96QZ7 1491 aaPredicted RBP21.53■■□□□ 1.04
SLIRP-209ENST00000557342 FBLN2P98095 1184 aa21.46■■□□□ 1.03
SLIRP-209ENST00000557342 SYNJ2O15056 1496 aa21.44■■□□□ 1.02
SLIRP-209ENST00000557342 ERICH3Q5RHP9 1530 aa21.42■■□□□ 1.02
SLIRP-209ENST00000557342 CHMP7Q8WUX9 453 aaPredicted RBP21.42■■□□□ 1.02
SLIRP-209ENST00000557342 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
SLIRP-209ENST00000557342 KIF27Q86VH2 1401 aa21.34■■□□□ 1.01
SLIRP-209ENST00000557342 FHAD1B1AJZ9 1412 aa21.32■■□□□ 1
SLIRP-209ENST00000557342 GRIN2AQ12879 1464 aa21.29■■□□□ 1
SLIRP-209ENST00000557342 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
SLIRP-209ENST00000557342 RIMBP3CA6NJZ7 1639 aa21.26■□□□□ 0.99
SLIRP-209ENST00000557342 RIMBP3BA6NNM3 1639 aa21.26■□□□□ 0.99
SLIRP-209ENST00000557342 RIMBP3Q9UFD9 1639 aa21.26■□□□□ 0.99
SLIRP-209ENST00000557342 CUL7Q14999 1698 aa21.26■□□□□ 0.99
SLIRP-209ENST00000557342 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
SLIRP-209ENST00000557342 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
SLIRP-209ENST00000557342 IGF1RP08069 1367 aa21.21■□□□□ 0.99
SLIRP-209ENST00000557342 NUP160Q12769 1436 aa21.19■□□□□ 0.98
SLIRP-209ENST00000557342 CEP170Q5SW79 1584 aa21.19■□□□□ 0.98
SLIRP-209ENST00000557342 CARMIL1Q5VZK9 1371 aa21.11■□□□□ 0.97
SLIRP-209ENST00000557342 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
SLIRP-209ENST00000557342 SHROOM2Q13796 1616 aa21.07■□□□□ 0.96
SLIRP-209ENST00000557342 ARAP1Q96P48 1450 aa21.04■□□□□ 0.96
SLIRP-209ENST00000557342 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
SLIRP-209ENST00000557342 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms