RNA–Protein interactions for RNA: ENST00000553981.1

SLIRP-202, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-202ENST00000553981 AEBP2Q6ZN18 517 aaPredicted RBP18.11■□□□□ 0.49
SLIRP-202ENST00000553981 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
SLIRP-202ENST00000553981 SENP3Q9H4L4 574 aaPredicted RBP15.42■□□□□ 0.06
SLIRP-202ENST00000553981 PHF23Q9BUL5 403 aaPredicted RBP15.24■□□□□ 0.03
SLIRP-202ENST00000553981 FOXD1Q16676 465 aa14.38□□□□□ -0.11
SLIRP-202ENST00000553981 PLPPR3Q6T4P5 718 aa13.75□□□□□ -0.21
SLIRP-202ENST00000553981 PPP6R1Q9UPN7 881 aa13.48□□□□□ -0.25
SLIRP-202ENST00000553981 PIAS4Q8N2W9 510 aaPredicted RBP13.44□□□□□ -0.26
SLIRP-202ENST00000553981 MSH5O43196 834 aa13.43□□□□□ -0.26
SLIRP-202ENST00000553981 ADRA2BP18089 450 aa13.43□□□□□ -0.26
SLIRP-202ENST00000553981 POTEDQ86YR6 584 aa13.09□□□□□ -0.31
SLIRP-202ENST00000553981 MAPK8IP2Q13387 824 aaPredicted RBP12.33□□□□□ -0.44
SLIRP-202ENST00000553981 SCAF1Q9H7N4 1312 aaKnown RBP12.25□□□□□ -0.45
SLIRP-202ENST00000553981 DMRT2Q9Y5R5 561 aa12.24□□□□□ -0.45
SLIRP-202ENST00000553981 PPP4R3CPQ6ZMV5 832 aa12.06□□□□□ -0.48
SLIRP-202ENST00000553981 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
SLIRP-202ENST00000553981 HOXD11P31277 338 aaPredicted RBP11.8□□□□□ -0.52
SLIRP-202ENST00000553981 DCAF8L1A6NGE4 600 aa11.73□□□□□ -0.53
SLIRP-202ENST00000553981 RNF216Q9NWF9 866 aaPredicted RBP11.71□□□□□ -0.53
SLIRP-202ENST00000553981 NCBP3Q53F19 620 aaKnown RBP11.58□□□□□ -0.56
SLIRP-202ENST00000553981 CACNB1Q02641 598 aaPredicted RBP11.51□□□□□ -0.57
SLIRP-202ENST00000553981 RNF39Q9H2S5 420 aa11.47□□□□□ -0.57
SLIRP-202ENST00000553981 NPM3O75607 178 aaKnown RBP11.45□□□□□ -0.58
SLIRP-202ENST00000553981 DNAJC5BQ9UF47 199 aa11.37□□□□□ -0.59
SLIRP-202ENST00000553981 C1QBPQ07021 282 aaKnown RBP11.29□□□□□ -0.6
SLIRP-202ENST00000553981 KCNA4P22459 653 aa11.26□□□□□ -0.61
SLIRP-202ENST00000553981 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.22□□□□□ -0.617e-10■■■■□ 20.3
SLIRP-202ENST00000553981 U3KPZ7 1027 aaPredicted RBP11.02□□□□□ -0.65
SLIRP-202ENST00000553981 SLC4A2P04920 1241 aa10.93□□□□□ -0.66
SLIRP-202ENST00000553981 SPINK5Q9NQ38 1064 aaPredicted RBP10.85□□□□□ -0.67
SLIRP-202ENST00000553981 CAPN15O75808 1086 aa10.81□□□□□ -0.68
SLIRP-202ENST00000553981 DSG3P32926 999 aa10.76□□□□□ -0.69
SLIRP-202ENST00000553981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.68□□□□□ -0.7
SLIRP-202ENST00000553981 HNRNPUL2Q1KMD3 747 aaKnown RBP10.68□□□□□ -0.7
SLIRP-202ENST00000553981 APLP2Q06481 763 aa10.67□□□□□ -0.7
SLIRP-202ENST00000553981 TRHP20396 242 aaPredicted RBP10.65□□□□□ -0.7
SLIRP-202ENST00000553981 ZNF219Q9P2Y4 722 aaPredicted RBP10.63□□□□□ -0.71
SLIRP-202ENST00000553981 SAMD1Q6SPF0 538 aaPredicted RBP10.62□□□□□ -0.71
SLIRP-202ENST00000553981 SLC4A1APQ9BWU0 796 aaKnown RBP10.61□□□□□ -0.71
SLIRP-202ENST00000553981 ABCB7O75027 752 aa10.57□□□□□ -0.72
SLIRP-202ENST00000553981 MYCNP04198 464 aaPredicted RBP10.57□□□□□ -0.72
SLIRP-202ENST00000553981 FOXD4L1Q9NU39 408 aa10.48□□□□□ -0.73
SLIRP-202ENST00000553981 POLA2Q14181 598 aa10.37□□□□□ -0.75
SLIRP-202ENST00000553981 ATF5Q9Y2D1 282 aaPredicted RBP10.36□□□□□ -0.75
SLIRP-202ENST00000553981 ZBTB22O15209 634 aa10.35□□□□□ -0.75
SLIRP-202ENST00000553981 POTEHQ6S545 545 aa10.25□□□□□ -0.77
SLIRP-202ENST00000553981 RBM42Q9BTD8 480 aaKnown RBP10.24□□□□□ -0.77
SLIRP-202ENST00000553981 ATXN8OSP0DMR3 200 aa10.15□□□□□ -0.78
SLIRP-202ENST00000553981 ZBTB12Q9Y330 459 aaPredicted RBP10.14□□□□□ -0.79
SLIRP-202ENST00000553981 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
SLIRP-202ENST00000553981 AKT1S1Q96B36 256 aa10.03□□□□□ -0.8
SLIRP-202ENST00000553981 CHRDL2Q6WN34 429 aa10.02□□□□□ -0.81
SLIRP-202ENST00000553981 REM2Q8IYK8 340 aaPredicted RBP9.94□□□□□ -0.82
SLIRP-202ENST00000553981 FBLN2P98095 1184 aa9.92□□□□□ -0.82
SLIRP-202ENST00000553981 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.82
SLIRP-202ENST00000553981 MKRN4PQ13434 485 aaPredicted RBP9.87□□□□□ -0.83
SLIRP-202ENST00000553981 SPDYE2BA6NHP3 402 aa9.84□□□□□ -0.83
SLIRP-202ENST00000553981 SPDYE6P0CI01 402 aa9.84□□□□□ -0.83
SLIRP-202ENST00000553981 SPDYE2Q495Y8 402 aa9.84□□□□□ -0.83
SLIRP-202ENST00000553981 PITPNM1O00562 1244 aa9.83□□□□□ -0.84
SLIRP-202ENST00000553981 PIP4P2Q8N4L2 257 aa9.8□□□□□ -0.84
SLIRP-202ENST00000553981 EHMT2Q96KQ7 1210 aa9.76□□□□□ -0.85
SLIRP-202ENST00000553981 FXR2P51116 673 aaKnown RBP eCLIP9.74□□□□□ -0.85
SLIRP-202ENST00000553981 ZNF692Q9BU19 519 aaPredicted RBP9.74□□□□□ -0.85
SLIRP-202ENST00000553981 SSUH2Q9Y2M2 353 aa9.73□□□□□ -0.85
SLIRP-202ENST00000553981 SPDYE1Q8NFV5 336 aaPredicted RBP9.67□□□□□ -0.86
SLIRP-202ENST00000553981 CLEC11AQ9Y240 323 aa9.66□□□□□ -0.86
SLIRP-202ENST00000553981 SP7Q8TDD2 431 aaPredicted RBP9.62□□□□□ -0.87
SLIRP-202ENST00000553981 HAX1O00165 279 aa9.6□□□□□ -0.87
SLIRP-202ENST00000553981 PABPN1Q86U42 306 aaKnown RBP eCLIP9.6□□□□□ -0.87
SLIRP-202ENST00000553981 PRKAR2AP13861 404 aaKnown RBP9.57□□□□□ -0.88
SLIRP-202ENST00000553981 EVX2Q03828 476 aa9.51□□□□□ -0.89
SLIRP-202ENST00000553981 PRR29P0C7W0 189 aa9.5□□□□□ -0.89
SLIRP-202ENST00000553981 CHADLQ6NUI6 762 aa9.48□□□□□ -0.89
SLIRP-202ENST00000553981 C19orf67A6NJJ6 358 aa9.43□□□□□ -0.9
SLIRP-202ENST00000553981 SPDYE4A6NLX3 237 aa9.4□□□□□ -0.9
SLIRP-202ENST00000553981 FARP1Q9Y4F1 1045 aaPredicted RBP9.33□□□□□ -0.92
SLIRP-202ENST00000553981 STAG3Q9UJ98 1225 aa9.32□□□□□ -0.92
SLIRP-202ENST00000553981 GABBR2O75899 941 aa9.28□□□□□ -0.92
SLIRP-202ENST00000553981 CREBZFQ9NS37 354 aa9.28□□□□□ -0.92
SLIRP-202ENST00000553981 CD44P16070 742 aaKnown RBP9.27□□□□□ -0.93
SLIRP-202ENST00000553981 PROM2Q8N271 834 aa9.19□□□□□ -0.94
SLIRP-202ENST00000553981 ZRANB1Q9UGI0 708 aa9.15□□□□□ -0.94
SLIRP-202ENST00000553981 MNX1P50219 401 aaPredicted RBP9.13□□□□□ -0.95
SLIRP-202ENST00000553981 CLCN6P51797 869 aa9.13□□□□□ -0.95
SLIRP-202ENST00000553981 ZNF579Q8NAF0 562 aaKnown RBP9.13□□□□□ -0.95
SLIRP-202ENST00000553981 POTEIP0CG38 1075 aa9.1□□□□□ -0.95
SLIRP-202ENST00000553981 NPM1P06748 294 aaKnown RBP eCLIP9.09□□□□□ -0.95
SLIRP-202ENST00000553981 PAK3O75914 559 aaPredicted RBP9.06□□□□□ -0.96
SLIRP-202ENST00000553981 GALR2O43603 387 aaPredicted RBP9.03□□□□□ -0.96
SLIRP-202ENST00000553981 LHX8Q68G74 356 aa9.03□□□□□ -0.96
SLIRP-202ENST00000553981 PHF12Q96QT6 1004 aa9.03□□□□□ -0.96
SLIRP-202ENST00000553981 DCBLD2Q96PD2 775 aa9.02□□□□□ -0.97
SLIRP-202ENST00000553981 FKBP8Q14318 412 aa8.97□□□□□ -0.97
SLIRP-202ENST00000553981 MIER1Q8N108 512 aa8.96□□□□□ -0.98
SLIRP-202ENST00000553981 TSPYL2Q9H2G4 693 aaPredicted RBP8.95□□□□□ -0.98
SLIRP-202ENST00000553981 PLEKHG5O94827 1062 aa8.94□□□□□ -0.98
SLIRP-202ENST00000553981 MS4A3Q96HJ5 214 aa8.91□□□□□ -0.98
SLIRP-202ENST00000553981 CCDC61Q9Y6R9 512 aa8.91□□□□□ -0.98
SLIRP-202ENST00000553981 PLCD3Q8N3E9 789 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms