RNA–Protein interactions for RNA: ENST00000608858.5

CTCFL-220, Transcript of CCCTC-binding factor like, humanhuman

TSL 1 (best)

Gene CTCFL, Length 905 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFL-220ENST00000608858 NISCHQ9Y2I1 1504 aa23.82■■□□□ 1.4
CTCFL-220ENST00000608858 ABCC9O60706 1549 aa22.5■■□□□ 1.19
CTCFL-220ENST00000608858 AEBP2Q6ZN18 517 aaPredicted RBP22.07■■□□□ 1.12
CTCFL-220ENST00000608858 DNAJC5BQ9UF47 199 aa21.87■■□□□ 1.09
CTCFL-220ENST00000608858 CCDC180Q9P1Z9 1646 aa21.48■■□□□ 1.03
CTCFL-220ENST00000608858 CHIC1Q5VXU3 224 aa21.19■□□□□ 0.98
CTCFL-220ENST00000608858 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
CTCFL-220ENST00000608858 RB1CC1Q8TDY2 1594 aa20.9■□□□□ 0.94
CTCFL-220ENST00000608858 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
CTCFL-220ENST00000608858 NACADO15069 1562 aa20.56■□□□□ 0.88
CTCFL-220ENST00000608858 DNAJC5Q9H3Z4 198 aa20.47■□□□□ 0.87
CTCFL-220ENST00000608858 UNC13AQ9UPW8 1703 aa20.45■□□□□ 0.86
CTCFL-220ENST00000608858 BICRAQ9NZM4 1560 aa20.37■□□□□ 0.85
CTCFL-220ENST00000608858 CECR2Q9BXF3 1484 aa20.26■□□□□ 0.83
CTCFL-220ENST00000608858 CC2D2AQ9P2K1 1620 aa20.17■□□□□ 0.82
CTCFL-220ENST00000608858 MYO15BQ96JP2 1530 aa19.92■□□□□ 0.78
CTCFL-220ENST00000608858 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
CTCFL-220ENST00000608858 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
CTCFL-220ENST00000608858 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
CTCFL-220ENST00000608858 ZCCHC6Q5VYS8 1495 aaKnown RBP19.52■□□□□ 0.72
CTCFL-220ENST00000608858 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
CTCFL-220ENST00000608858 DCAF1Q9Y4B6 1507 aa19.46■□□□□ 0.71
CTCFL-220ENST00000608858 CUX2O14529 1486 aa19.45■□□□□ 0.7
CTCFL-220ENST00000608858 ERCC6Q03468 1493 aa19.42■□□□□ 0.7
CTCFL-220ENST00000608858 NESP48681 1621 aa19.14■□□□□ 0.65
CTCFL-220ENST00000608858 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
CTCFL-220ENST00000608858 SENP3Q9H4L4 574 aaPredicted RBP18.94■□□□□ 0.62
CTCFL-220ENST00000608858 ATAD2BQ9ULI0 1458 aa18.94■□□□□ 0.62
CTCFL-220ENST00000608858 THOC2Q8NI27 1593 aaKnown RBP18.86■□□□□ 0.61
CTCFL-220ENST00000608858 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
CTCFL-220ENST00000608858 KIF21AQ7Z4S6 1674 aa18.74■□□□□ 0.59
CTCFL-220ENST00000608858 HMGXB3Q12766 1538 aa18.74■□□□□ 0.59
CTCFL-220ENST00000608858 BAZ1BQ9UIG0 1483 aaKnown RBP18.72■□□□□ 0.59
CTCFL-220ENST00000608858 OSCARQ8IYS5 282 aa18.71■□□□□ 0.59
CTCFL-220ENST00000608858 PDS5BQ9NTI5 1447 aa18.69■□□□□ 0.58
CTCFL-220ENST00000608858 PHF23Q9BUL5 403 aaPredicted RBP18.69■□□□□ 0.58
CTCFL-220ENST00000608858 SMARCA4P51532 1647 aa18.69■□□□□ 0.58
CTCFL-220ENST00000608858 LAMC3Q9Y6N6 1575 aa18.67■□□□□ 0.58
CTCFL-220ENST00000608858 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
CTCFL-220ENST00000608858 MRC2Q9UBG0 1479 aa18.54■□□□□ 0.56
CTCFL-220ENST00000608858 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
CTCFL-220ENST00000608858 TRHP20396 242 aaPredicted RBP18.48■□□□□ 0.55
CTCFL-220ENST00000608858 WDR62O43379 1518 aa18.44■□□□□ 0.54
CTCFL-220ENST00000608858 CYB5RLQ6IPT4 315 aa18.43■□□□□ 0.54
CTCFL-220ENST00000608858 MROH2BQ7Z745 1585 aa18.42■□□□□ 0.54
CTCFL-220ENST00000608858 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
CTCFL-220ENST00000608858 RIMBP3CA6NJZ7 1639 aa18.39■□□□□ 0.53
CTCFL-220ENST00000608858 RIMBP3BA6NNM3 1639 aa18.39■□□□□ 0.53
CTCFL-220ENST00000608858 RIMBP3Q9UFD9 1639 aa18.39■□□□□ 0.53
CTCFL-220ENST00000608858 CEP164Q9UPV0 1460 aa18.33■□□□□ 0.53
CTCFL-220ENST00000608858 FANCD2Q9BXW9 1451 aa18.3■□□□□ 0.52
CTCFL-220ENST00000608858 ARHGEF11O15085 1522 aa18.25■□□□□ 0.51
CTCFL-220ENST00000608858 URB2Q14146 1524 aaKnown RBP18.19■□□□□ 0.5
CTCFL-220ENST00000608858 WIZO95785 1651 aa18.18■□□□□ 0.5
CTCFL-220ENST00000608858 ZNF608Q9ULD9 1512 aaPredicted RBP18.14■□□□□ 0.49
CTCFL-220ENST00000608858 FBLN2P98095 1184 aa18.13■□□□□ 0.49
CTCFL-220ENST00000608858 CFTRP13569 1480 aa18.09■□□□□ 0.49
CTCFL-220ENST00000608858 ARAP1Q96P48 1450 aa18.04■□□□□ 0.48
CTCFL-220ENST00000608858 IFT140Q96RY7 1462 aa17.98■□□□□ 0.47
CTCFL-220ENST00000608858 AQRO60306 1485 aaKnown RBP eCLIP17.95■□□□□ 0.464e-8■■■■□ 20.6
CTCFL-220ENST00000608858 CHD1O14646 1710 aa17.91■□□□□ 0.46
CTCFL-220ENST00000608858 EIF4G3O43432 1585 aaKnown RBP17.87■□□□□ 0.45
CTCFL-220ENST00000608858 TOPBP1Q92547 1522 aa17.86■□□□□ 0.45
CTCFL-220ENST00000608858 RSF1Q96T23 1441 aaPredicted RBP17.82■□□□□ 0.44
CTCFL-220ENST00000608858 CHMP7Q8WUX9 453 aaPredicted RBP17.77■□□□□ 0.44
CTCFL-220ENST00000608858 TDRD9Q8NDG6 1382 aaKnown RBP17.77■□□□□ 0.43
CTCFL-220ENST00000608858 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
CTCFL-220ENST00000608858 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
CTCFL-220ENST00000608858 PRDM2Q13029 1718 aa17.71■□□□□ 0.43
CTCFL-220ENST00000608858 RAD54L2Q9Y4B4 1467 aa17.7■□□□□ 0.42
CTCFL-220ENST00000608858 TARBP1Q13395 1621 aaKnown RBP17.7■□□□□ 0.42
CTCFL-220ENST00000608858 ILDR1Q86SU0 546 aaPredicted RBP17.7■□□□□ 0.42
CTCFL-220ENST00000608858 ABCC8Q09428 1581 aa17.69■□□□□ 0.42
CTCFL-220ENST00000608858 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
CTCFL-220ENST00000608858 SOGA1O94964 1423 aa17.64■□□□□ 0.41
CTCFL-220ENST00000608858 SNAPC4Q5SXM2 1469 aa17.63■□□□□ 0.41
CTCFL-220ENST00000608858 POLA1P09884 1462 aaPredicted RBP17.63■□□□□ 0.41
CTCFL-220ENST00000608858 FOXD1Q16676 465 aa17.62■□□□□ 0.41
CTCFL-220ENST00000608858 CLASP1Q7Z460 1538 aa17.62■□□□□ 0.41
CTCFL-220ENST00000608858 GAPVD1Q14C86 1478 aa17.6■□□□□ 0.41
CTCFL-220ENST00000608858 SYNJ1O43426 1573 aa17.57■□□□□ 0.4
CTCFL-220ENST00000608858 KDM4FA0A1W2PPD8 638 aa17.48■□□□□ 0.39
CTCFL-220ENST00000608858 ERCC6L2Q5T890 1561 aa17.46■□□□□ 0.39
CTCFL-220ENST00000608858 SYNJ2O15056 1496 aa17.46■□□□□ 0.39
CTCFL-220ENST00000608858 GRIN2BQ13224 1484 aa17.45■□□□□ 0.38
CTCFL-220ENST00000608858 MAGI1Q96QZ7 1491 aaPredicted RBP17.45■□□□□ 0.38
CTCFL-220ENST00000608858 FGD5Q6ZNL6 1462 aa17.44■□□□□ 0.38
CTCFL-220ENST00000608858 FAM69CQ0P6D2 419 aa17.4■□□□□ 0.38
CTCFL-220ENST00000608858 KIF13AQ9H1H9 1805 aa17.33■□□□□ 0.37
CTCFL-220ENST00000608858 CUX1P39880 1505 aa17.31■□□□□ 0.36
CTCFL-220ENST00000608858 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
CTCFL-220ENST00000608858 NPM1P06748 294 aaKnown RBP eCLIP17.28■□□□□ 0.36
CTCFL-220ENST00000608858 PBRM1Q86U86 1689 aa17.28■□□□□ 0.36
CTCFL-220ENST00000608858 CEP170Q5SW79 1584 aa17.28■□□□□ 0.36
CTCFL-220ENST00000608858 GRIN2AQ12879 1464 aa17.22■□□□□ 0.35
CTCFL-220ENST00000608858 JPH4Q96JJ6 628 aa17.2■□□□□ 0.34
CTCFL-220ENST00000608858 PRG4Q92954 1404 aaPredicted RBP17.19■□□□□ 0.34
CTCFL-220ENST00000608858 ABCC10Q5T3U5 1492 aa17.18■□□□□ 0.34
CTCFL-220ENST00000608858 TSPOAP1O95153 1857 aa17.16■□□□□ 0.34
CTCFL-220ENST00000608858 NUP160Q12769 1436 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms