Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 TUBB8P6-201ENST00000436895 1288 ntBASIC21.81■■□□□ 1.08
PRPF40AO75400 RNA5SP413-201ENST00000516373 109 ntBASIC21.81■■□□□ 1.08
PRPF40AO75400 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.81■■□□□ 1.08
PRPF40AO75400 AC083880.1-201ENST00000608266 535 ntBASIC21.81■■□□□ 1.08
PRPF40AO75400 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.81■■□□□ 1.08
PRPF40AO75400 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
PRPF40AO75400 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 AC139713.2-201ENST00000641328 2723 ntBASIC21.81■■□□□ 1.08
PRPF40AO75400 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PRPF40AO75400 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PRPF40AO75400 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.8■■□□□ 1.08
PRPF40AO75400 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.8■■□□□ 1.08
PRPF40AO75400 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PRPF40AO75400 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.8■■□□□ 1.08
PRPF40AO75400 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.8■■□□□ 1.08
PRPF40AO75400 MIR4651-201ENST00000582622 73 ntBASIC21.8■■□□□ 1.08
PRPF40AO75400 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.8■■□□□ 1.08
PRPF40AO75400 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PRPF40AO75400 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PRPF40AO75400 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.8■■□□□ 1.08
PRPF40AO75400 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
PRPF40AO75400 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PRPF40AO75400 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.79■■□□□ 1.08
PRPF40AO75400 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
PRPF40AO75400 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PRPF40AO75400 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.79■■□□□ 1.08
PRPF40AO75400 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.79■■□□□ 1.08
PRPF40AO75400 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.79■■□□□ 1.08
PRPF40AO75400 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.79■■□□□ 1.08
PRPF40AO75400 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PRPF40AO75400 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 AL121906.2-201ENST00000621597 723 ntBASIC21.79■■□□□ 1.08
PRPF40AO75400 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 HLA-B-256ENST00000639848 1089 ntBASIC21.79■■□□□ 1.08
PRPF40AO75400 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PRPF40AO75400 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
PRPF40AO75400 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
PRPF40AO75400 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
PRPF40AO75400 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 AC135776.1-201ENST00000319817 2481 ntBASIC21.78■■□□□ 1.08
PRPF40AO75400 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.78■■□□□ 1.08
PRPF40AO75400 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.78■■□□□ 1.08
PRPF40AO75400 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PRPF40AO75400 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC21.78■■□□□ 1.08
PRPF40AO75400 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.78■■□□□ 1.08
PRPF40AO75400 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PRPF40AO75400 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.78■■□□□ 1.08
PRPF40AO75400 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.78■■□□□ 1.08
PRPF40AO75400 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PRPF40AO75400 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms