RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 NISCHQ9Y2I1 1504 aa43.72■■■■■ 4.59
EXOSC3-201ENST00000327304 CCDC180Q9P1Z9 1646 aa38.43■■■■□ 3.74
EXOSC3-201ENST00000327304 ABCC9O60706 1549 aa36.86■■■■□ 3.49
EXOSC3-201ENST00000327304 ZCCHC6Q5VYS8 1495 aaKnown RBP36.61■■■■□ 3.45
EXOSC3-201ENST00000327304 DCAF8L2P0C7V8 631 aa36.22■■■■□ 3.39
EXOSC3-201ENST00000327304 DCAF1Q9Y4B6 1507 aa36.15■■■■□ 3.38
EXOSC3-201ENST00000327304 MYO15BQ96JP2 1530 aa35.95■■■■□ 3.34
EXOSC3-201ENST00000327304 NACADO15069 1562 aa35.91■■■■□ 3.34
EXOSC3-201ENST00000327304 RB1CC1Q8TDY2 1594 aa35.75■■■■□ 3.31
EXOSC3-201ENST00000327304 SCRIBQ14160 1630 aa35.24■■■■□ 3.23
EXOSC3-201ENST00000327304 SHROOM4Q9ULL8 1493 aa35.2■■■■□ 3.23
EXOSC3-201ENST00000327304 UNC13AQ9UPW8 1703 aa35.03■■■■□ 3.2
EXOSC3-201ENST00000327304 BICRAQ9NZM4 1560 aa34.71■■■■□ 3.15
EXOSC3-201ENST00000327304 PABPN1Q86U42 306 aaKnown RBP eCLIP34.62■■■■□ 3.13
EXOSC3-201ENST00000327304 CECR2Q9BXF3 1484 aa34.02■■■■□ 3.04
EXOSC3-201ENST00000327304 BAZ1AQ9NRL2 1556 aaPredicted RBP33.8■■■■□ 3
EXOSC3-201ENST00000327304 MROH2BQ7Z745 1585 aa33.76■■■□□ 2.99
EXOSC3-201ENST00000327304 SMARCA4P51532 1647 aa33.74■■■□□ 2.99
EXOSC3-201ENST00000327304 EIF4G1Q04637 1599 aaKnown RBP33.7■■■□□ 2.99
EXOSC3-201ENST00000327304 RSF1Q96T23 1441 aaPredicted RBP33.67■■■□□ 2.98
EXOSC3-201ENST00000327304 SUPT5HO00267 1087 aaKnown RBP33.53■■■□□ 2.96
EXOSC3-201ENST00000327304 WIZO95785 1651 aa33.44■■■□□ 2.94
EXOSC3-201ENST00000327304 PEG3Q9GZU2 1588 aa33.36■■■□□ 2.93
EXOSC3-201ENST00000327304 CC2D2AQ9P2K1 1620 aa33.35■■■□□ 2.93
EXOSC3-201ENST00000327304 ATAD2BQ9ULI0 1458 aa33.34■■■□□ 2.93
EXOSC3-201ENST00000327304 SMARCA2P51531 1590 aa33.3■■■□□ 2.92
EXOSC3-201ENST00000327304 NCAPD3P42695 1498 aa33.14■■■□□ 2.9
EXOSC3-201ENST00000327304 BAZ1BQ9UIG0 1483 aaKnown RBP33.11■■■□□ 2.89
EXOSC3-201ENST00000327304 TOP2AP11388 1531 aaKnown RBP33.1■■■□□ 2.89
EXOSC3-201ENST00000327304 DNAJC5BQ9UF47 199 aa33.07■■■□□ 2.88
EXOSC3-201ENST00000327304 HMGXB3Q12766 1538 aa33.07■■■□□ 2.88
EXOSC3-201ENST00000327304 CCDC88BA6NC98 1476 aa32.73■■■□□ 2.83
EXOSC3-201ENST00000327304 CFTRP13569 1480 aa32.24■■■□□ 2.75
EXOSC3-201ENST00000327304 CADPSQ9ULU8 1353 aa32.24■■■□□ 2.75
EXOSC3-201ENST00000327304 NESP48681 1621 aa32.18■■■□□ 2.74
EXOSC3-201ENST00000327304 LAMC3Q9Y6N6 1575 aa32.12■■■□□ 2.73
EXOSC3-201ENST00000327304 PRDM2Q13029 1718 aa32.05■■■□□ 2.72
EXOSC3-201ENST00000327304 FANCD2Q9BXW9 1451 aa31.9■■■□□ 2.7
EXOSC3-201ENST00000327304 PDS5BQ9NTI5 1447 aa31.87■■■□□ 2.69
EXOSC3-201ENST00000327304 ABCC8Q09428 1581 aa31.85■■■□□ 2.69
EXOSC3-201ENST00000327304 KIF21AQ7Z4S6 1674 aa31.8■■■□□ 2.68
EXOSC3-201ENST00000327304 CHIC1Q5VXU3 224 aa31.79■■■□□ 2.68
EXOSC3-201ENST00000327304 CEP164Q9UPV0 1460 aa31.76■■■□□ 2.67
EXOSC3-201ENST00000327304 WRNQ14191 1432 aaPredicted RBP eCLIP31.7■■■□□ 2.67
EXOSC3-201ENST00000327304 ERCC6Q03468 1493 aa31.66■■■□□ 2.66
EXOSC3-201ENST00000327304 SYNJ1O43426 1573 aa31.63■■■□□ 2.65
EXOSC3-201ENST00000327304 CUX1P39880 1505 aa31.61■■■□□ 2.65
EXOSC3-201ENST00000327304 TRIM41Q8WV44 630 aa31.57■■■□□ 2.64
EXOSC3-201ENST00000327304 URB2Q14146 1524 aaKnown RBP31.55■■■□□ 2.64
EXOSC3-201ENST00000327304 TOP2BQ02880 1626 aa31.53■■■□□ 2.64
EXOSC3-201ENST00000327304 MRC2Q9UBG0 1479 aa31.53■■■□□ 2.64
EXOSC3-201ENST00000327304 BIVM-ERCC5R4GMW8 1640 aa31.52■■■□□ 2.64
EXOSC3-201ENST00000327304 DNMBPQ6XZF7 1577 aa31.51■■■□□ 2.64
EXOSC3-201ENST00000327304 TOPBP1Q92547 1522 aa31.49■■■□□ 2.63
EXOSC3-201ENST00000327304 THOC2Q8NI27 1593 aaKnown RBP31.45■■■□□ 2.63
EXOSC3-201ENST00000327304 WDR62O43379 1518 aa31.4■■■□□ 2.62
EXOSC3-201ENST00000327304 FGD5Q6ZNL6 1462 aa31.35■■■□□ 2.61
EXOSC3-201ENST00000327304 POLA1P09884 1462 aaPredicted RBP31.29■■■□□ 2.6
EXOSC3-201ENST00000327304 RAD54L2Q9Y4B4 1467 aa31.18■■■□□ 2.58
EXOSC3-201ENST00000327304 CUX2O14529 1486 aa31.16■■■□□ 2.58
EXOSC3-201ENST00000327304 SOGA1O94964 1423 aa31.15■■■□□ 2.58
EXOSC3-201ENST00000327304 TARBP1Q13395 1621 aaKnown RBP31.08■■■□□ 2.57
EXOSC3-201ENST00000327304 ABCA10Q8WWZ4 1543 aa31.06■■■□□ 2.56
EXOSC3-201ENST00000327304 RUSC2Q8N2Y8 1516 aa31.04■■■□□ 2.56
EXOSC3-201ENST00000327304 WDR97A6NE52 1622 aa31.04■■■□□ 2.56
EXOSC3-201ENST00000327304 IFT140Q96RY7 1462 aa31.03■■■□□ 2.56
EXOSC3-201ENST00000327304 FAM9AQ8IZU1 332 aaPredicted RBP30.98■■■□□ 2.55
EXOSC3-201ENST00000327304 KIF27Q86VH2 1401 aa30.95■■■□□ 2.54
EXOSC3-201ENST00000327304 TDRD9Q8NDG6 1382 aaKnown RBP30.92■■■□□ 2.54
EXOSC3-201ENST00000327304 EEA1Q15075 1411 aa30.9■■■□□ 2.54
EXOSC3-201ENST00000327304 ZNF608Q9ULD9 1512 aaPredicted RBP30.9■■■□□ 2.54
EXOSC3-201ENST00000327304 ABCA5Q8WWZ7 1642 aa30.87■■■□□ 2.53
EXOSC3-201ENST00000327304 AQRO60306 1485 aaKnown RBP eCLIP30.83■■■□□ 2.532e-6■■■□□ 15.2
EXOSC3-201ENST00000327304 GAPVD1Q14C86 1478 aa30.82■■■□□ 2.52
EXOSC3-201ENST00000327304 EIF4G3O43432 1585 aaKnown RBP30.79■■■□□ 2.52
EXOSC3-201ENST00000327304 CSRNP3Q8WYN3 585 aa30.79■■■□□ 2.52
EXOSC3-201ENST00000327304 IGF1RP08069 1367 aa30.74■■■□□ 2.51
EXOSC3-201ENST00000327304 PBRM1Q86U86 1689 aa30.71■■■□□ 2.51
EXOSC3-201ENST00000327304 ERICH3Q5RHP9 1530 aa30.68■■■□□ 2.5
EXOSC3-201ENST00000327304 GRIN2BQ13224 1484 aa30.67■■■□□ 2.5
EXOSC3-201ENST00000327304 PRXQ9BXM0 1461 aa30.6■■■□□ 2.49
EXOSC3-201ENST00000327304 CUL7Q14999 1698 aa30.57■■■□□ 2.48
EXOSC3-201ENST00000327304 CARMIL1Q5VZK9 1371 aa30.57■■■□□ 2.48
EXOSC3-201ENST00000327304 KIF21BO75037 1637 aa30.57■■■□□ 2.48
EXOSC3-201ENST00000327304 EHMT2Q96KQ7 1210 aa30.57■■■□□ 2.48
EXOSC3-201ENST00000327304 SNAPC4Q5SXM2 1469 aa30.56■■■□□ 2.48
EXOSC3-201ENST00000327304 LOC105371045A0A1W2PR82 267 aa30.54■■■□□ 2.48
EXOSC3-201ENST00000327304 ADAMTS12P58397 1594 aa30.52■■■□□ 2.48
EXOSC3-201ENST00000327304 RAPGEF2Q9Y4G8 1499 aa30.52■■■□□ 2.48
EXOSC3-201ENST00000327304 MAGI1Q96QZ7 1491 aaPredicted RBP30.48■■■□□ 2.47
EXOSC3-201ENST00000327304 FHAD1B1AJZ9 1412 aa30.47■■■□□ 2.47
EXOSC3-201ENST00000327304 GOLGA3Q08378 1498 aa30.47■■■□□ 2.47
EXOSC3-201ENST00000327304 SYNJ2O15056 1496 aa30.37■■■□□ 2.45
EXOSC3-201ENST00000327304 UBTFP17480 764 aaKnown RBP30.33■■■□□ 2.45
EXOSC3-201ENST00000327304 GRIN2AQ12879 1464 aa30.3■■■□□ 2.44
EXOSC3-201ENST00000327304 CHMP7Q8WUX9 453 aaPredicted RBP30.29■■■□□ 2.44
EXOSC3-201ENST00000327304 FBLN2P98095 1184 aa30.29■■■□□ 2.44
EXOSC3-201ENST00000327304 TNIKQ9UKE5 1360 aa30.24■■■□□ 2.43
EXOSC3-201ENST00000327304 CHD1O14646 1710 aa30.24■■■□□ 2.43
EXOSC3-201ENST00000327304 CTTNBP2Q8WZ74 1663 aa30.15■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms