Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 AC145676.1-201ENST00000514988 2004 ntBASIC23.93■■□□□ 1.42
MSX2P35548 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSX2P35548 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.93■■□□□ 1.42
MSX2P35548 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSX2P35548 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.92■■□□□ 1.42
MSX2P35548 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.92■■□□□ 1.42
MSX2P35548 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSX2P35548 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSX2P35548 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSX2P35548 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSX2P35548 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSX2P35548 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
MSX2P35548 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.9■■□□□ 1.42
MSX2P35548 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.89■■□□□ 1.42
MSX2P35548 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSX2P35548 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.89■■□□□ 1.41
MSX2P35548 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSX2P35548 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.89■■□□□ 1.41
MSX2P35548 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
MSX2P35548 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.88■■□□□ 1.41
MSX2P35548 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.87■■□□□ 1.41
MSX2P35548 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSX2P35548 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.87■■□□□ 1.41
MSX2P35548 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSX2P35548 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.85■■□□□ 1.41
MSX2P35548 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSX2P35548 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.85■■□□□ 1.41
MSX2P35548 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.85■■□□□ 1.41
MSX2P35548 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSX2P35548 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.84■■□□□ 1.41
MSX2P35548 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSX2P35548 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSX2P35548 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.83■■□□□ 1.41
MSX2P35548 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSX2P35548 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.83■■□□□ 1.4
MSX2P35548 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSX2P35548 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSX2P35548 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.8■■□□□ 1.4
MSX2P35548 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSX2P35548 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
MSX2P35548 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.79■■□□□ 1.4
MSX2P35548 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.79■■□□□ 1.4
MSX2P35548 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSX2P35548 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.78■■□□□ 1.4
MSX2P35548 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 AC093323.1-202ENST00000635031 2045 ntBASIC23.78■■□□□ 1.4
MSX2P35548 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.78■■□□□ 1.4
MSX2P35548 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
MSX2P35548 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
MSX2P35548 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSX2P35548 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.77■■□□□ 1.4
MSX2P35548 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.77■■□□□ 1.4
MSX2P35548 AC018358.1-201ENST00000631079 1402 ntBASIC23.76■■□□□ 1.39
MSX2P35548 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSX2P35548 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.75■■□□□ 1.39
MSX2P35548 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSX2P35548 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.75■■□□□ 1.39
MSX2P35548 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSX2P35548 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
MSX2P35548 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
MSX2P35548 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.74■■□□□ 1.39
MSX2P35548 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
MSX2P35548 SETD8P1-201ENST00000623146 1180 ntBASIC23.73■■□□□ 1.39
MSX2P35548 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSX2P35548 AC092803.2-201ENST00000564287 1899 ntBASIC23.73■■□□□ 1.39
MSX2P35548 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSX2P35548 DUSP8P4-201ENST00000399538 1761 ntBASIC23.7■■□□□ 1.39
MSX2P35548 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms