Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.443e-7■■■■□ 26.4
YBX3P16989 FBXO6-203ENST00000474239 803 ntTSL 332.72■■■□□ 2.837e-8■■■■□ 26.3
YBX3P16989 SMAD2-210ENST00000587421 575 ntTSL 419.08■□□□□ 0.641e-7■■■■□ 26.3
YBX3P16989 MRPL9-203ENST00000461182 348 ntTSL 224.72■■□□□ 1.553e-8■■■■□ 26.3
YBX3P16989 MRPL9-209ENST00000486707 503 ntTSL 323.24■■□□□ 1.313e-8■■■■□ 26.3
YBX3P16989 MRPL9-208ENST00000481777 390 ntTSL 523.05■■□□□ 1.283e-8■■■■□ 26.3
YBX3P16989 LYRM4-203ENST00000458438 941 ntTSL 216.92■□□□□ 0.34e-11■■■■□ 26.3
YBX3P16989 LYRM4-204ENST00000463032 1487 ntTSL 1 (best)16.79■□□□□ 0.284e-11■■■■□ 26.3
YBX3P16989 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.83e-8■■■■□ 26.1
YBX3P16989 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.067e-10■■■■□ 26.1
YBX3P16989 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.27e-10■■■■□ 26.1
YBX3P16989 POM121-204ENST00000446813 3456 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.757e-10■■■■□ 26.1
YBX3P16989 UBE2Q1-207ENST00000497453 830 ntTSL 523.08■■□□□ 1.293e-8■■■■□ 26.1
YBX3P16989 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.193e-8■■■■□ 26.1
YBX3P16989 UBE2Q1-202ENST00000467683 370 ntTSL 516.22■□□□□ 0.193e-8■■■■□ 26.1
YBX3P16989 UBE2Q1-205ENST00000483639 694 ntTSL 315.68■□□□□ 0.13e-8■■■■□ 26.1
YBX3P16989 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.512e-7■■■■□ 26.1
YBX3P16989 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.22e-7■■■■□ 26.1
YBX3P16989 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.012e-7■■■■□ 26.1
YBX3P16989 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.222e-7■■■■□ 26.1
YBX3P16989 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.753e-7■■■■□ 26
YBX3P16989 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.45■■□□□ 1.343e-7■■■■□ 26
YBX3P16989 ATP6V1B2-202ENST00000519667 670 ntTSL 1 (best)28.47■■■□□ 2.154e-8■■■■□ 26
YBX3P16989 GLUD1-204ENST00000487058 409 ntTSL 37.59□□□□□ -1.194e-8■■■■□ 26
YBX3P16989 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC8.34□□□□□ -1.073e-8■■■■□ 26
YBX3P16989 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.89□□□□□ -1.313e-8■■■■□ 26
YBX3P16989 ALKBH5-202ENST00000490106 2146 ntTSL 1 (best)11.69□□□□□ -0.544e-9■■■■□ 26
YBX3P16989 NFE2L2-211ENST00000464747 2749 ntTSL 2 BASIC13.1□□□□□ -0.311e-6■■■■□ 26
YBX3P16989 PTDSS1-206ENST00000522072 1112 ntTSL 2 BASIC16.04■□□□□ 0.161e-6■■■■□ 26
YBX3P16989 SLC8B1-212ENST00000551230 549 ntTSL 424.15■■□□□ 1.461e-8■■■■□ 26
YBX3P16989 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.72■□□□□ 0.431e-8■■■■□ 26
YBX3P16989 SLC8B1-216ENST00000553238 1675 ntTSL 516.4■□□□□ 0.221e-8■■■■□ 26
YBX3P16989 SLC8B1-214ENST00000552565 2287 ntTSL 216.07■□□□□ 0.161e-8■■■■□ 26
YBX3P16989 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.121e-8■■■■□ 26
YBX3P16989 SLC8B1-211ENST00000550672 2925 ntTSL 1 (best)13.44□□□□□ -0.261e-8■■■■□ 26
YBX3P16989 SLC8B1-213ENST00000552014 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.371e-8■■■■□ 26
YBX3P16989 TMC6-204ENST00000585849 552 ntTSL 225.95■■□□□ 1.747e-11■■■■□ 26
YBX3P16989 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.97■■□□□ 1.277e-11■■■■□ 26
YBX3P16989 TMC6-209ENST00000588087 2384 ntTSL 222.01■■□□□ 1.117e-11■■■■□ 26
YBX3P16989 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.54■■□□□ 1.047e-11■■■■□ 26
YBX3P16989 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.627e-11■■■■□ 26
YBX3P16989 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.547e-11■■■■□ 26
YBX3P16989 TMC6-224ENST00000593044 3070 ntTSL 217.66■□□□□ 0.427e-11■■■■□ 26
YBX3P16989 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.127e-11■■■■□ 26
YBX3P16989 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.851e-6■■■■□ 25.9
YBX3P16989 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.811e-6■■■■□ 25.9
YBX3P16989 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.271e-6■■■■□ 25.9
YBX3P16989 DLGAP4-203ENST00000373907 3337 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.429e-7■■■■□ 25.9
YBX3P16989 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.9■□□□□ 0.621e-9■■■■□ 25.9
YBX3P16989 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.85■□□□□ 0.451e-9■■■■□ 25.9
YBX3P16989 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC16.59■□□□□ 0.251e-9■■■■□ 25.9
YBX3P16989 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC16.55■□□□□ 0.241e-9■■■■□ 25.9
YBX3P16989 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC16.55■□□□□ 0.241e-9■■■■□ 25.9
YBX3P16989 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.25■□□□□ 0.191e-9■■■■□ 25.9
YBX3P16989 PGAP2-235ENST00000532523 1696 ntTSL 5 BASIC15.95■□□□□ 0.141e-9■■■■□ 25.9
YBX3P16989 PGAP2-217ENST00000477358 1474 ntTSL 514.24□□□□□ -0.131e-9■■■■□ 25.9
YBX3P16989 PGAP2-225ENST00000493547 1772 ntTSL 3 BASIC12.02□□□□□ -0.491e-9■■■■□ 25.9
YBX3P16989 PGAP2-231ENST00000528216 1815 ntTSL 1 (best)11.52□□□□□ -0.571e-9■■■■□ 25.9
YBX3P16989 PGAP2-232ENST00000528526 1106 ntTSL 29.22□□□□□ -0.931e-9■■■■□ 25.9
YBX3P16989 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC8.32□□□□□ -1.081e-9■■■■□ 25.9
YBX3P16989 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.081e-6■■■■□ 25.9
YBX3P16989 PPIL1-202ENST00000483552 1347 ntTSL 29.83□□□□□ -0.843e-7■■■■□ 25.8
YBX3P16989 MRPL48-205ENST00000497094 531 ntTSL 412.84□□□□□ -0.353e-7■■■■□ 25.8
YBX3P16989 MRPL48-207ENST00000535277 598 ntTSL 310.18□□□□□ -0.783e-7■■■■□ 25.8
YBX3P16989 MRPL48-212ENST00000543374 463 ntTSL 38.94□□□□□ -0.983e-7■■■■□ 25.8
YBX3P16989 MRPL48-208ENST00000537007 287 ntTSL 35.04□□□□□ -1.63e-7■■■■□ 25.8
YBX3P16989 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC9.14□□□□□ -0.953e-8■■■■□ 25.8
YBX3P16989 LAMTOR3-203ENST00000515100 961 ntTSL 1 (best)7.21□□□□□ -1.263e-8■■■■□ 25.8
YBX3P16989 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.43e-8■■■■□ 25.8
YBX3P16989 STAT1-211ENST00000464072 865 ntTSL 218.72■□□□□ 0.592e-6■■■■□ 25.8
YBX3P16989 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.22e-6■■■■□ 25.8
YBX3P16989 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.192e-6■■■■□ 25.8
YBX3P16989 STAT1-209ENST00000452281 2594 ntTSL 1 (best)15.68■□□□□ 0.12e-6■■■■□ 25.8
YBX3P16989 STAT1-201ENST00000361099 4310 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.272e-6■■■■□ 25.8
YBX3P16989 STAT1-212ENST00000540176 4216 ntTSL 5 BASIC12.23□□□□□ -0.452e-6■■■■□ 25.8
YBX3P16989 STAT1-204ENST00000409465 3097 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.572e-6■■■■□ 25.8
YBX3P16989 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.322e-10■■■■□ 25.8
YBX3P16989 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC16.91■□□□□ 0.33e-8■■■■□ 25.7
YBX3P16989 ANXA2-227ENST00000559956 558 ntTSL 512.65□□□□□ -0.389e-11■■■■□ 25.7
YBX3P16989 ANXA2-225ENST00000559780 802 ntTSL 311.83□□□□□ -0.529e-11■■■■□ 25.7
YBX3P16989 ANXA2-221ENST00000559467 755 ntTSL 57.81□□□□□ -1.169e-11■■■■□ 25.7
YBX3P16989 TMEM33-202ENST00000325094 6221 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.635e-7■■■■□ 25.7
YBX3P16989 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.745e-7■■■■□ 25.7
YBX3P16989 CDK5RAP2-211ENST00000479584 611 ntTSL 316.38■□□□□ 0.211e-8■■■■□ 25.7
YBX3P16989 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.792e-8■■■■□ 25.7
YBX3P16989 LRRC27-209ENST00000475747 2660 ntTSL 218.6■□□□□ 0.572e-8■■■■□ 25.7
YBX3P16989 LRRC27-202ENST00000368612 1765 ntTSL 2 BASIC15.49■□□□□ 0.072e-8■■■■□ 25.7
YBX3P16989 LRRC27-208ENST00000472556 646 ntTSL 1 (best)13.35□□□□□ -0.272e-8■■■■□ 25.7
YBX3P16989 LRRC27-206ENST00000462656 2302 ntTSL 212.81□□□□□ -0.362e-8■■■■□ 25.7
YBX3P16989 LRRC27-204ENST00000368614 6374 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.822e-8■■■■□ 25.7
YBX3P16989 SMIM12-203ENST00000426886 2618 ntTSL 1 (best)16■□□□□ 0.152e-6■■■■□ 25.7
YBX3P16989 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 02e-6■■■■□ 25.7
YBX3P16989 SMIM12-204ENST00000446026 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.722e-6■■■■□ 25.7
YBX3P16989 VAPA-204ENST00000577901 917 ntTSL 222.01■■□□□ 1.113e-29■■■■□ 25.6
YBX3P16989 VAPA-209ENST00000585042 567 ntTSL 420.57■□□□□ 0.883e-29■■■■□ 25.6
YBX3P16989 METTL26-209ENST00000565163 485 ntTSL 325.18■■□□□ 1.625e-9■■■■□ 25.6
YBX3P16989 METTL26-212ENST00000568773 499 ntTSL 223.58■■□□□ 1.375e-9■■■■□ 25.6
YBX3P16989 METTL26-208ENST00000564039 518 ntTSL 223.13■■□□□ 1.295e-9■■■■□ 25.6
YBX3P16989 TNPO2-214ENST00000589337 541 ntTSL 416.56■□□□□ 0.247e-10■■■■□ 25.6
YBX3P16989 PEPD-212ENST00000593163 1045 ntTSL 224.71■■□□□ 1.552e-7■■■■□ 25.5
Retrieved 100 of 29,075 protein–RNA pairs in 64.5 ms