Protein–RNA interactions for Protein: O60741

HCN1, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1, humanhuman

Predictions only

Length 890 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN1O60741 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC23.31■■□□□ 1.32
HCN1O60741 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
HCN1O60741 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HCN1O60741 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HCN1O60741 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
HCN1O60741 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HCN1O60741 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HCN1O60741 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HCN1O60741 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
HCN1O60741 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.3■■□□□ 1.32
HCN1O60741 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HCN1O60741 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.3■■□□□ 1.32
HCN1O60741 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC23.3■■□□□ 1.32
HCN1O60741 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HCN1O60741 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HCN1O60741 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 AC135983.2-203ENST00000454486 1613 ntBASIC23.29■■□□□ 1.32
HCN1O60741 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HCN1O60741 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HCN1O60741 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.28■■□□□ 1.32
HCN1O60741 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.28■■□□□ 1.32
HCN1O60741 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
HCN1O60741 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.28■■□□□ 1.32
HCN1O60741 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.28■■□□□ 1.32
HCN1O60741 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HCN1O60741 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HCN1O60741 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.27■■□□□ 1.32
HCN1O60741 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HCN1O60741 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HCN1O60741 AC135731.1-201ENST00000569415 2548 ntBASIC23.26■■□□□ 1.31
HCN1O60741 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.26■■□□□ 1.31
HCN1O60741 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HCN1O60741 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
HCN1O60741 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.25■■□□□ 1.31
HCN1O60741 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
HCN1O60741 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
HCN1O60741 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HCN1O60741 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
HCN1O60741 WHAMMP2-203ENST00000563942 1603 ntBASIC23.24■■□□□ 1.31
HCN1O60741 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
HCN1O60741 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
HCN1O60741 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HCN1O60741 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
HCN1O60741 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HCN1O60741 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HCN1O60741 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
HCN1O60741 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
HCN1O60741 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
HCN1O60741 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
HCN1O60741 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
HCN1O60741 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
HCN1O60741 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
HCN1O60741 BX255925.1-201ENST00000566954 1854 ntBASIC23.21■■□□□ 1.31
HCN1O60741 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.21■■□□□ 1.31
HCN1O60741 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
HCN1O60741 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HCN1O60741 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
HCN1O60741 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
HCN1O60741 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
HCN1O60741 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HCN1O60741 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.18■■□□□ 1.3
HCN1O60741 AC008813.1-201ENST00000536597 885 ntBASIC23.17■■□□□ 1.3
HCN1O60741 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.17■■□□□ 1.3
HCN1O60741 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.17■■□□□ 1.3
HCN1O60741 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HCN1O60741 AL121749.1-202ENST00000609313 2153 ntBASIC23.17■■□□□ 1.3
HCN1O60741 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
HCN1O60741 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.16■■□□□ 1.3
HCN1O60741 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HCN1O60741 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HCN1O60741 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HCN1O60741 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HCN1O60741 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.16■■□□□ 1.3
HCN1O60741 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HCN1O60741 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HCN1O60741 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.16■■□□□ 1.3
HCN1O60741 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
HCN1O60741 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.15■■□□□ 1.3
HCN1O60741 HSD17B1P1-201ENST00000590052 955 ntBASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms