RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W MTC1P47018 478 aaKnown RBP19.53■□□□□ 0.72
VPS28YPL065W DRS1P32892 752 aaKnown RBP18.4■□□□□ 0.54
VPS28YPL065W FAP1P53971 965 aa17.43■□□□□ 0.38
VPS28YPL065W PRI1P10363 409 aa16.37■□□□□ 0.21
VPS28YPL065W PRY3P47033 881 aa16.34■□□□□ 0.21
VPS28YPL065W AAD16Q02895 342 aa16.28■□□□□ 0.2
VPS28YPL065W ISW2Q08773 1120 aa16.23■□□□□ 0.19
VPS28YPL065W DIP2Q12220 943 aaPredicted RBP16.07■□□□□ 0.16
VPS28YPL065W RPG1P38249 964 aaKnown RBP15.98■□□□□ 0.15
VPS28YPL065W RSE1Q04693 1361 aaKnown RBP15.53■□□□□ 0.08
VPS28YPL065W AVT3P36062 692 aa15.5■□□□□ 0.07
VPS28YPL065W TSR3Q12094 313 aaKnown RBP15.44■□□□□ 0.06
VPS28YPL065W HAA1Q12753 694 aaKnown RBP15.41■□□□□ 0.06
VPS28YPL065W BFR2Q06631 534 aaKnown RBP15.39■□□□□ 0.05
VPS28YPL065W YCK3P39962 524 aa15.28■□□□□ 0.04
VPS28YPL065W RPL17AP05740 184 aaKnown RBP15□□□□□ -0.01
VPS28YPL065W RPL17BP46990 184 aaKnown RBP15□□□□□ -0.01
VPS28YPL065W REB1P21538 810 aa14.97□□□□□ -0.01
VPS28YPL065W MRPL32P25348 183 aa14.94□□□□□ -0.02
VPS28YPL065W YGL015CP33199 130 aa14.3□□□□□ -0.12
VPS28YPL065W SPT21P35209 758 aa14.3□□□□□ -0.12
VPS28YPL065W YKR023WP36119 530 aaKnown RBP14.11□□□□□ -0.15
VPS28YPL065W CDC27P38042 758 aa14.09□□□□□ -0.15
VPS28YPL065W RIM101P33400 625 aa13.88□□□□□ -0.19
VPS28YPL065W TFC8Q12308 588 aa13.86□□□□□ -0.19
VPS28YPL065W HOP09932 586 aa13.82□□□□□ -0.2
VPS28YPL065W UBP10P53874 792 aaPredicted RBP13.81□□□□□ -0.2
VPS28YPL065W DCD1P06773 312 aa13.71□□□□□ -0.21
VPS28YPL065W MAP2P38174 421 aaKnown RBP13.67□□□□□ -0.22
VPS28YPL065W TFA1P36100 482 aa13.64□□□□□ -0.23
VPS28YPL065W SCY1P53009 804 aa13.45□□□□□ -0.26
VPS28YPL065W BCH2P36122 765 aa13.4□□□□□ -0.26
VPS28YPL065W OXP1P28273 1286 aa13.37□□□□□ -0.27
VPS28YPL065W SLX5P32828 619 aaKnown RBP13.32□□□□□ -0.28
VPS28YPL065W YIL055CP40523 627 aaKnown RBP13.31□□□□□ -0.28
VPS28YPL065W TIF4632P39936 914 aaKnown RBP13.3□□□□□ -0.28
VPS28YPL065W PTP3P40048 928 aa13.26□□□□□ -0.29
VPS28YPL065W TGL3P40308 642 aa13.18□□□□□ -0.3
VPS28YPL065W EPS1P40557 701 aa13.1□□□□□ -0.31
VPS28YPL065W RSM7P47150 247 aa13.06□□□□□ -0.32
VPS28YPL065W YAH1Q12184 172 aaKnown RBP13.04□□□□□ -0.32
VPS28YPL065W BDF1P35817 686 aa13.03□□□□□ -0.32
VPS28YPL065W BBC1P47068 1157 aa13□□□□□ -0.33
VPS28YPL065W BUD31P25337 157 aaPredicted RBP12.99□□□□□ -0.33
VPS28YPL065W AI2P03876 854 aa12.91□□□□□ -0.34
VPS28YPL065W YLR271WQ06152 274 aa12.81□□□□□ -0.36
VPS28YPL065W UBP9P39967 754 aa12.8□□□□□ -0.36
VPS28YPL065W SSP1P38871 571 aa12.75□□□□□ -0.37
VPS28YPL065W ARP8Q12386 881 aaKnown RBP RIP-Chip data12.74□□□□□ -0.37not detected
VPS28YPL065W NSR1P27476 414 aaKnown RBP RIP-Chip data12.66□□□□□ -0.38not detected
VPS28YPL065W YOR238WQ08634 303 aa12.63□□□□□ -0.39
VPS28YPL065W PSD2P53037 1138 aaKnown RBP12.62□□□□□ -0.39
VPS28YPL065W MST1P07236 462 aa12.61□□□□□ -0.39
VPS28YPL065W YAP5P40574 245 aa12.57□□□□□ -0.4
VPS28YPL065W MGA2P40578 1113 aa12.45□□□□□ -0.42
VPS28YPL065W MRM1P25270 412 aa12.44□□□□□ -0.42
VPS28YPL065W SIS1P25294 352 aaKnown RBP12.43□□□□□ -0.42
VPS28YPL065W YBL029C-AQ3E756 94 aa12.35□□□□□ -0.43
VPS28YPL065W CST9Q06032 482 aa12.34□□□□□ -0.43
VPS28YPL065W GTT3P39996 337 aa12.31□□□□□ -0.44
VPS28YPL065W VNX1P42839 908 aa12.26□□□□□ -0.45
VPS28YPL065W RTG3P38165 486 aa12.25□□□□□ -0.45
VPS28YPL065W WSC3Q12215 556 aa12.22□□□□□ -0.45
VPS28YPL065W YMR1P47147 688 aaKnown RBP RIP-Chip data12.19□□□□□ -0.46not detected
VPS28YPL065W SPP1Q03012 353 aa12.19□□□□□ -0.46
VPS28YPL065W PIB1Q06651 286 aa12.18□□□□□ -0.46
VPS28YPL065W VPS29P38759 282 aa12.14□□□□□ -0.47
VPS28YPL065W TIF11P38912 153 aaKnown RBP12.1□□□□□ -0.47
VPS28YPL065W DBP1P24784 617 aaKnown RBP12.09□□□□□ -0.47
VPS28YPL065W MSB4Q12317 492 aa12.03□□□□□ -0.48
VPS28YPL065W YFR006WP43590 535 aa12.01□□□□□ -0.49
VPS28YPL065W RCR1P38212 213 aa12□□□□□ -0.49
VPS28YPL065W STS1P38637 319 aa12□□□□□ -0.49
VPS28YPL065W EAP1P36041 632 aaKnown RBP11.98□□□□□ -0.49
VPS28YPL065W ULI1P43604 169 aa11.96□□□□□ -0.49
VPS28YPL065W VMA1P17255 1071 aaKnown RBP11.95□□□□□ -0.5
VPS28YPL065W YOL036WQ08206 761 aa11.92□□□□□ -0.5
VPS28YPL065W SAM3Q08986 587 aa11.9□□□□□ -0.5
VPS28YPL065W SET4P42948 560 aa11.89□□□□□ -0.51
VPS28YPL065W LDB19Q12502 818 aa11.89□□□□□ -0.51
VPS28YPL065W IOC2Q12072 812 aa11.87□□□□□ -0.51
VPS28YPL065W FKH1P40466 484 aa11.86□□□□□ -0.51
VPS28YPL065W YJL171CP46992 396 aa11.82□□□□□ -0.52
VPS28YPL065W AIR2Q12476 344 aaKnown RBP11.82□□□□□ -0.52
VPS28YPL065W ABP1P15891 592 aaKnown RBP11.8□□□□□ -0.52
VPS28YPL065W TRP5P00931 707 aaKnown RBP11.79□□□□□ -0.52
VPS28YPL065W MAK11P20484 414 aaKnown RBP11.76□□□□□ -0.53
VPS28YPL065W GYP5Q12344 894 aa11.75□□□□□ -0.53
VPS28YPL065W RAM2P29703 316 aa11.74□□□□□ -0.53
VPS28YPL065W RTG1P32607 177 aa11.71□□□□□ -0.53
VPS28YPL065W YNL035CP53962 389 aaKnown RBP11.71□□□□□ -0.53
VPS28YPL065W HTA1P04911 132 aaKnown RBP11.67□□□□□ -0.54
VPS28YPL065W HTA2P04912 132 aa11.67□□□□□ -0.54
VPS28YPL065W SEC61P32915 480 aa11.67□□□□□ -0.54
VPS28YPL065W MIF2P35201 549 aa11.66□□□□□ -0.54
VPS28YPL065W NCR1Q12200 1170 aa11.66□□□□□ -0.54
VPS28YPL065W BMT6Q12291 365 aa11.66□□□□□ -0.54
VPS28YPL065W JIP4Q03361 876 aa11.64□□□□□ -0.55
VPS28YPL065W DCW1P36091 449 aa11.62□□□□□ -0.55
VPS28YPL065W TFG1P41895 735 aaPredicted RBP11.62□□□□□ -0.55
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms