RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C FAP1P53971 965 aa10.53□□□□□ -0.72
LCB4YOR171C PRY3P47033 881 aa9.96□□□□□ -0.82
LCB4YOR171C HAA1Q12753 694 aaKnown RBP9.19□□□□□ -0.94
LCB4YOR171C YCK3P39962 524 aa9.17□□□□□ -0.94
LCB4YOR171C MTC1P47018 478 aaKnown RBP9.08□□□□□ -0.96
LCB4YOR171C AAD16Q02895 342 aa9.01□□□□□ -0.97
LCB4YOR171C DRS1P32892 752 aaKnown RBP8.9□□□□□ -0.98
LCB4YOR171C PRI1P10363 409 aa8.77□□□□□ -1.01
LCB4YOR171C BUD31P25337 157 aaPredicted RBP8.31□□□□□ -1.08
LCB4YOR171C TSR3Q12094 313 aaKnown RBP8.22□□□□□ -1.09
LCB4YOR171C YGL015CP33199 130 aa8.15□□□□□ -1.11
LCB4YOR171C ISW2Q08773 1120 aa8.02□□□□□ -1.12
LCB4YOR171C RPG1P38249 964 aaKnown RBP7.98□□□□□ -1.13
LCB4YOR171C MRPL32P25348 183 aa7.94□□□□□ -1.14
LCB4YOR171C SIS1P25294 352 aaKnown RBP7.81□□□□□ -1.16
LCB4YOR171C BFR2Q06631 534 aaKnown RBP7.74□□□□□ -1.17
LCB4YOR171C DIP2Q12220 943 aaPredicted RBP7.54□□□□□ -1.2
LCB4YOR171C AVT3P36062 692 aa7.5□□□□□ -1.21
LCB4YOR171C UBP9P39967 754 aa7.38□□□□□ -1.23
LCB4YOR171C TFA1P36100 482 aa7.34□□□□□ -1.23
LCB4YOR171C UBP10P53874 792 aaPredicted RBP7.19□□□□□ -1.26
LCB4YOR171C MAP2P38174 421 aaKnown RBP7.15□□□□□ -1.27
LCB4YOR171C CDC27P38042 758 aa7.11□□□□□ -1.27
LCB4YOR171C RSE1Q04693 1361 aaKnown RBP7.09□□□□□ -1.27
LCB4YOR171C TIF4632P39936 914 aaKnown RBP6.96□□□□□ -1.29
LCB4YOR171C REB1P21538 810 aa6.92□□□□□ -1.3
LCB4YOR171C TGL3P40308 642 aa6.92□□□□□ -1.3
LCB4YOR171C RPL17AP05740 184 aaKnown RBP6.84□□□□□ -1.31
LCB4YOR171C RPL17BP46990 184 aaKnown RBP6.84□□□□□ -1.31
LCB4YOR171C SLX5P32828 619 aaKnown RBP6.71□□□□□ -1.34
LCB4YOR171C SCY1P53009 804 aa6.68□□□□□ -1.34
LCB4YOR171C SPT21P35209 758 aa6.63□□□□□ -1.35
LCB4YOR171C YBL029C-AQ3E756 94 aa6.62□□□□□ -1.35
LCB4YOR171C YJL171CP46992 396 aa6.62□□□□□ -1.35
LCB4YOR171C YKR023WP36119 530 aaKnown RBP6.6□□□□□ -1.35
LCB4YOR171C DCD1P06773 312 aa6.54□□□□□ -1.36
LCB4YOR171C RIM101P33400 625 aa6.53□□□□□ -1.36
LCB4YOR171C HOP09932 586 aa6.52□□□□□ -1.37
LCB4YOR171C TFC8Q12308 588 aa6.47□□□□□ -1.37
LCB4YOR171C AIR2Q12476 344 aaKnown RBP6.47□□□□□ -1.37
LCB4YOR171C VNX1P42839 908 aa6.43□□□□□ -1.38
LCB4YOR171C SPP1Q03012 353 aa6.43□□□□□ -1.38
LCB4YOR171C RGA2Q06407 1009 aa6.38□□□□□ -1.39
LCB4YOR171C FKH1P40466 484 aa6.36□□□□□ -1.39
LCB4YOR171C PTP3P40048 928 aa6.36□□□□□ -1.39
LCB4YOR171C OXP1P28273 1286 aa6.35□□□□□ -1.39
LCB4YOR171C MST1P07236 462 aa6.33□□□□□ -1.4
LCB4YOR171C BMT6Q12291 365 aa6.31□□□□□ -1.4
LCB4YOR171C YOR238WQ08634 303 aa6.29□□□□□ -1.4
LCB4YOR171C SSP1P38871 571 aa6.27□□□□□ -1.41
LCB4YOR171C WSC3Q12215 556 aa6.26□□□□□ -1.41
LCB4YOR171C YAH1Q12184 172 aaKnown RBP6.24□□□□□ -1.41
LCB4YOR171C RQC2Q12532 1038 aaKnown RBP6.23□□□□□ -1.41
LCB4YOR171C YIL055CP40523 627 aaKnown RBP6.19□□□□□ -1.42
LCB4YOR171C BCH2P36122 765 aa6.19□□□□□ -1.42
LCB4YOR171C TIF11P38912 153 aaKnown RBP6.19□□□□□ -1.42
LCB4YOR171C YLR271WQ06152 274 aa6.17□□□□□ -1.42
LCB4YOR171C RSM7P47150 247 aa6.13□□□□□ -1.43
LCB4YOR171C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.13□□□□□ -1.43not detected
LCB4YOR171C LDB19Q12502 818 aa6.11□□□□□ -1.43
LCB4YOR171C DMA1P38823 416 aa6.11□□□□□ -1.43
LCB4YOR171C MGA2P40578 1113 aa6.02□□□□□ -1.44
LCB4YOR171C AI2P03876 854 aa6.02□□□□□ -1.45
LCB4YOR171C PSD2P53037 1138 aaKnown RBP6.01□□□□□ -1.45
LCB4YOR171C CST9Q06032 482 aa6.01□□□□□ -1.45
LCB4YOR171C ULI1P43604 169 aa6□□□□□ -1.45
LCB4YOR171C NSR1P27476 414 aaKnown RBP RIP-Chip data5.97□□□□□ -1.45not detected
LCB4YOR171C RGA1P39083 1007 aa5.97□□□□□ -1.45
LCB4YOR171C GTT3P39996 337 aa5.97□□□□□ -1.45
LCB4YOR171C EPS1P40557 701 aa5.96□□□□□ -1.45
LCB4YOR171C YAP5P40574 245 aa5.96□□□□□ -1.45
LCB4YOR171C BBC1P47068 1157 aa5.95□□□□□ -1.46
LCB4YOR171C IOC2Q12072 812 aa5.94□□□□□ -1.46
LCB4YOR171C BCK2P33306 851 aa5.94□□□□□ -1.46
LCB4YOR171C BDF1P35817 686 aa5.92□□□□□ -1.46
LCB4YOR171C MRM1P25270 412 aa5.85□□□□□ -1.47
LCB4YOR171C RTG1P32607 177 aa5.83□□□□□ -1.48
LCB4YOR171C NCR1Q12200 1170 aa5.83□□□□□ -1.48
LCB4YOR171C RCR1P38212 213 aa5.81□□□□□ -1.48
LCB4YOR171C RAM2P29703 316 aa5.79□□□□□ -1.48
LCB4YOR171C RTG3P38165 486 aa5.75□□□□□ -1.49
LCB4YOR171C SAS10Q12136 610 aaPredicted RBP5.73□□□□□ -1.49
LCB4YOR171C EAP1P36041 632 aaKnown RBP5.72□□□□□ -1.49
LCB4YOR171C VPS29P38759 282 aa5.72□□□□□ -1.49
LCB4YOR171C MAK11P20484 414 aaKnown RBP5.68□□□□□ -1.5
LCB4YOR171C CHL1P22516 861 aaPredicted RBP5.68□□□□□ -1.5
LCB4YOR171C DPS1P04802 557 aaKnown RBP5.66□□□□□ -1.5
LCB4YOR171C SEC61P32915 480 aa5.66□□□□□ -1.5
LCB4YOR171C TFG1P41895 735 aaPredicted RBP5.66□□□□□ -1.5
LCB4YOR171C MSB4Q12317 492 aa5.66□□□□□ -1.5
LCB4YOR171C SET1P38827 1080 aaKnown RBP5.66□□□□□ -1.5
LCB4YOR171C YNL035CP53962 389 aaKnown RBP5.64□□□□□ -1.51
LCB4YOR171C STS1P38637 319 aa5.64□□□□□ -1.51
LCB4YOR171C XDJ1P39102 459 aa5.64□□□□□ -1.51
LCB4YOR171C YMR1P47147 688 aaKnown RBP RIP-Chip data5.64□□□□□ -1.51not detected
LCB4YOR171C SAP30P38429 201 aa5.63□□□□□ -1.51
LCB4YOR171C TRP5P00931 707 aaKnown RBP5.62□□□□□ -1.51
LCB4YOR171C YPR148CQ06523 435 aa5.61□□□□□ -1.51
LCB4YOR171C DBP1P24784 617 aaKnown RBP5.6□□□□□ -1.51
LCB4YOR171C COQ8P27697 501 aa5.6□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms