RNA–Protein interactions for RNA: YOR036W

PEP12, Transcript of Target membrane receptor (t-SNARE), yeastyeast

Gene PEP12, Length 867 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEP12YOR036W MTC1P47018 478 aaKnown RBP13.62□□□□□ -0.23
PEP12YOR036W FAP1P53971 965 aa12.8□□□□□ -0.36
PEP12YOR036W DRS1P32892 752 aaKnown RBP12.21□□□□□ -0.45
PEP12YOR036W PRY3P47033 881 aa12.07□□□□□ -0.48
PEP12YOR036W PRI1P10363 409 aa11.78□□□□□ -0.52
PEP12YOR036W AAD16Q02895 342 aa11.75□□□□□ -0.53
PEP12YOR036W YCK3P39962 524 aa11.47□□□□□ -0.57
PEP12YOR036W ISW2Q08773 1120 aa11.37□□□□□ -0.59
PEP12YOR036W RPG1P38249 964 aaKnown RBP11.29□□□□□ -0.6
PEP12YOR036W HAA1Q12753 694 aaKnown RBP11.27□□□□□ -0.61
PEP12YOR036W TSR3Q12094 313 aaKnown RBP11.11□□□□□ -0.63
PEP12YOR036W DIP2Q12220 943 aaPredicted RBP10.89□□□□□ -0.67
PEP12YOR036W RSE1Q04693 1361 aaKnown RBP10.65□□□□□ -0.7
PEP12YOR036W MRPL32P25348 183 aa10.63□□□□□ -0.71
PEP12YOR036W AVT3P36062 692 aa10.39□□□□□ -0.75
PEP12YOR036W RPL17AP05740 184 aaKnown RBP10.37□□□□□ -0.75
PEP12YOR036W RPL17BP46990 184 aaKnown RBP10.37□□□□□ -0.75
PEP12YOR036W REB1P21538 810 aa10.34□□□□□ -0.75
PEP12YOR036W YGL015CP33199 130 aa10.33□□□□□ -0.76
PEP12YOR036W CDC27P38042 758 aa10.08□□□□□ -0.8
PEP12YOR036W YKR023WP36119 530 aaKnown RBP9.93□□□□□ -0.82
PEP12YOR036W SPT21P35209 758 aa9.92□□□□□ -0.82
PEP12YOR036W BFR2Q06631 534 aaKnown RBP9.9□□□□□ -0.82
PEP12YOR036W MAP2P38174 421 aaKnown RBP9.8□□□□□ -0.84
PEP12YOR036W UBP10P53874 792 aaPredicted RBP9.8□□□□□ -0.84
PEP12YOR036W BUD31P25337 157 aaPredicted RBP9.72□□□□□ -0.85
PEP12YOR036W HOP09932 586 aa9.71□□□□□ -0.86
PEP12YOR036W DCD1P06773 312 aa9.7□□□□□ -0.86
PEP12YOR036W TFC8Q12308 588 aa9.7□□□□□ -0.86
PEP12YOR036W SCY1P53009 804 aa9.51□□□□□ -0.89
PEP12YOR036W RIM101P33400 625 aa9.44□□□□□ -0.9
PEP12YOR036W SLX5P32828 619 aaKnown RBP9.39□□□□□ -0.91
PEP12YOR036W TIF4632P39936 914 aaKnown RBP9.38□□□□□ -0.91
PEP12YOR036W BCH2P36122 765 aa9.37□□□□□ -0.91
PEP12YOR036W TGL3P40308 642 aa9.37□□□□□ -0.91
PEP12YOR036W UBP9P39967 754 aa9.2□□□□□ -0.94
PEP12YOR036W SIS1P25294 352 aaKnown RBP9.18□□□□□ -0.94
PEP12YOR036W OXP1P28273 1286 aa9.13□□□□□ -0.95
PEP12YOR036W EPS1P40557 701 aa9.1□□□□□ -0.95
PEP12YOR036W BDF1P35817 686 aa9.07□□□□□ -0.96
PEP12YOR036W PTP3P40048 928 aa8.96□□□□□ -0.98
PEP12YOR036W MST1P07236 462 aa8.94□□□□□ -0.98
PEP12YOR036W YIL055CP40523 627 aaKnown RBP8.92□□□□□ -0.98
PEP12YOR036W YBL029C-AQ3E756 94 aa8.89□□□□□ -0.99
PEP12YOR036W YOR238WQ08634 303 aa8.86□□□□□ -0.99
PEP12YOR036W NSR1P27476 414 aaKnown RBP RIP-Chip data8.82□□□□□ -1not detected
PEP12YOR036W RSM7P47150 247 aa8.82□□□□□ -1
PEP12YOR036W AI2P03876 854 aa8.8□□□□□ -1
PEP12YOR036W BBC1P47068 1157 aa8.8□□□□□ -1
PEP12YOR036W VNX1P42839 908 aa8.76□□□□□ -1.01
PEP12YOR036W YAH1Q12184 172 aaKnown RBP8.76□□□□□ -1.01
PEP12YOR036W YAP5P40574 245 aa8.74□□□□□ -1.01
PEP12YOR036W SPP1Q03012 353 aa8.67□□□□□ -1.02
PEP12YOR036W WSC3Q12215 556 aa8.67□□□□□ -1.02
PEP12YOR036W YLR271WQ06152 274 aa8.62□□□□□ -1.03
PEP12YOR036W TIF11P38912 153 aaKnown RBP8.55□□□□□ -1.04
PEP12YOR036W PSD2P53037 1138 aaKnown RBP8.55□□□□□ -1.04
PEP12YOR036W AIR2Q12476 344 aaKnown RBP8.55□□□□□ -1.04
PEP12YOR036W GTT3P39996 337 aa8.53□□□□□ -1.04
PEP12YOR036W FKH1P40466 484 aa8.53□□□□□ -1.04
PEP12YOR036W PIB1Q06651 286 aa8.5□□□□□ -1.05
PEP12YOR036W TFA1P36100 482 aa8.47□□□□□ -1.05
PEP12YOR036W MRM1P25270 412 aa8.46□□□□□ -1.06
PEP12YOR036W YJL171CP46992 396 aa8.43□□□□□ -1.06
PEP12YOR036W LDB19Q12502 818 aa8.43□□□□□ -1.06
PEP12YOR036W ULI1P43604 169 aa8.42□□□□□ -1.06
PEP12YOR036W IOC2Q12072 812 aa8.42□□□□□ -1.06
PEP12YOR036W SSP1P38871 571 aa8.33□□□□□ -1.08
PEP12YOR036W MSB4Q12317 492 aa8.32□□□□□ -1.08
PEP12YOR036W BMT6Q12291 365 aa8.31□□□□□ -1.08
PEP12YOR036W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.31□□□□□ -1.08not detected
PEP12YOR036W VPS29P38759 282 aa8.29□□□□□ -1.08
PEP12YOR036W CST9Q06032 482 aa8.29□□□□□ -1.08
PEP12YOR036W YOL036WQ08206 761 aa8.29□□□□□ -1.08
PEP12YOR036W SET4P42948 560 aa8.28□□□□□ -1.08
PEP12YOR036W YMR1P47147 688 aaKnown RBP RIP-Chip data8.28□□□□□ -1.08not detected
PEP12YOR036W EAP1P36041 632 aaKnown RBP8.27□□□□□ -1.09
PEP12YOR036W DBP1P24784 617 aaKnown RBP8.26□□□□□ -1.09
PEP12YOR036W TRP5P00931 707 aaKnown RBP8.25□□□□□ -1.09
PEP12YOR036W YFR006WP43590 535 aa8.25□□□□□ -1.09
PEP12YOR036W RTG1P32607 177 aa8.24□□□□□ -1.09
PEP12YOR036W STS1P38637 319 aa8.23□□□□□ -1.09
PEP12YOR036W VMA1P17255 1071 aaKnown RBP8.21□□□□□ -1.1
PEP12YOR036W RTG3P38165 486 aa8.21□□□□□ -1.1
PEP12YOR036W MGA2P40578 1113 aa8.2□□□□□ -1.1
PEP12YOR036W NCR1Q12200 1170 aa8.18□□□□□ -1.1
PEP12YOR036W SAM3Q08986 587 aa8.17□□□□□ -1.1
PEP12YOR036W RCR1P38212 213 aa8.16□□□□□ -1.1
PEP12YOR036W YNL035CP53962 389 aaKnown RBP8.16□□□□□ -1.1
PEP12YOR036W SEC61P32915 480 aa8.13□□□□□ -1.11
PEP12YOR036W DAN4P47179 1161 aa8.06□□□□□ -1.12
PEP12YOR036W GYP5Q12344 894 aa8.02□□□□□ -1.13
PEP12YOR036W SAP30P38429 201 aa8□□□□□ -1.13
PEP12YOR036W TFG1P41895 735 aaPredicted RBP8□□□□□ -1.13
PEP12YOR036W JIP4Q03361 876 aa8□□□□□ -1.13
PEP12YOR036W ABP1P15891 592 aaKnown RBP7.99□□□□□ -1.13
PEP12YOR036W DCW1P36091 449 aa7.97□□□□□ -1.13
PEP12YOR036W HTA1P04911 132 aaKnown RBP7.96□□□□□ -1.14
PEP12YOR036W HTA2P04912 132 aa7.96□□□□□ -1.14
PEP12YOR036W YDL129WQ07555 291 aa7.95□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms