RNA–Protein interactions for RNA: YML107C

PML39, Transcript of Protein required for nuclear retention of unspliced pre-mRNAs, yeastyeast

Gene PML39, Length 1,005 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PML39YML107C MTC1P47018 478 aaKnown RBP15.43■□□□□ 0.06
PML39YML107C FAP1P53971 965 aa14.35□□□□□ -0.11
PML39YML107C DRS1P32892 752 aaKnown RBP14.14□□□□□ -0.15
PML39YML107C PRY3P47033 881 aa13.48□□□□□ -0.25
PML39YML107C PRI1P10363 409 aa13.19□□□□□ -0.3
PML39YML107C AAD16Q02895 342 aa13.18□□□□□ -0.3
PML39YML107C ISW2Q08773 1120 aa12.91□□□□□ -0.34
PML39YML107C RPG1P38249 964 aaKnown RBP12.78□□□□□ -0.36
PML39YML107C HAA1Q12753 694 aaKnown RBP12.6□□□□□ -0.39
PML39YML107C YCK3P39962 524 aa12.58□□□□□ -0.4
PML39YML107C DIP2Q12220 943 aaPredicted RBP12.51□□□□□ -0.41
PML39YML107C TSR3Q12094 313 aaKnown RBP12.49□□□□□ -0.41
PML39YML107C RSE1Q04693 1361 aaKnown RBP12.18□□□□□ -0.46
PML39YML107C MRPL32P25348 183 aa12.03□□□□□ -0.48
PML39YML107C AVT3P36062 692 aa11.9□□□□□ -0.5
PML39YML107C BFR2Q06631 534 aaKnown RBP11.85□□□□□ -0.51
PML39YML107C REB1P21538 810 aa11.84□□□□□ -0.51
PML39YML107C RPL17AP05740 184 aaKnown RBP11.83□□□□□ -0.52
PML39YML107C RPL17BP46990 184 aaKnown RBP11.83□□□□□ -0.52
PML39YML107C YGL015CP33199 130 aa11.61□□□□□ -0.55
PML39YML107C CDC27P38042 758 aa11.3□□□□□ -0.6
PML39YML107C SPT21P35209 758 aa11.2□□□□□ -0.62
PML39YML107C YKR023WP36119 530 aaKnown RBP11.19□□□□□ -0.62
PML39YML107C UBP10P53874 792 aaPredicted RBP11.02□□□□□ -0.65
PML39YML107C HOP09932 586 aa11.01□□□□□ -0.65
PML39YML107C TFA1P36100 482 aa11.01□□□□□ -0.65
PML39YML107C MAP2P38174 421 aaKnown RBP11.01□□□□□ -0.65
PML39YML107C TFC8Q12308 588 aa10.97□□□□□ -0.65
PML39YML107C DCD1P06773 312 aa10.96□□□□□ -0.65
PML39YML107C RIM101P33400 625 aa10.77□□□□□ -0.69
PML39YML107C SCY1P53009 804 aa10.76□□□□□ -0.69
PML39YML107C BUD31P25337 157 aaPredicted RBP10.74□□□□□ -0.69
PML39YML107C SLX5P32828 619 aaKnown RBP10.64□□□□□ -0.71
PML39YML107C TIF4632P39936 914 aaKnown RBP10.64□□□□□ -0.71
PML39YML107C BCH2P36122 765 aa10.61□□□□□ -0.71
PML39YML107C TGL3P40308 642 aa10.56□□□□□ -0.72
PML39YML107C OXP1P28273 1286 aa10.4□□□□□ -0.74
PML39YML107C UBP9P39967 754 aa10.39□□□□□ -0.75
PML39YML107C YIL055CP40523 627 aaKnown RBP10.36□□□□□ -0.75
PML39YML107C PTP3P40048 928 aa10.34□□□□□ -0.75
PML39YML107C EPS1P40557 701 aa10.33□□□□□ -0.76
PML39YML107C BDF1P35817 686 aa10.29□□□□□ -0.76
PML39YML107C SIS1P25294 352 aaKnown RBP10.27□□□□□ -0.77
PML39YML107C BBC1P47068 1157 aa10.14□□□□□ -0.79
PML39YML107C RSM7P47150 247 aa10.14□□□□□ -0.79
PML39YML107C YAH1Q12184 172 aaKnown RBP10.13□□□□□ -0.79
PML39YML107C AI2P03876 854 aa10.07□□□□□ -0.8
PML39YML107C YOR238WQ08634 303 aa10.06□□□□□ -0.8
PML39YML107C MST1P07236 462 aa10.03□□□□□ -0.8
PML39YML107C YBL029C-AQ3E756 94 aa9.97□□□□□ -0.81
PML39YML107C NSR1P27476 414 aaKnown RBP RIP-Chip data9.93□□□□□ -0.82not detected
PML39YML107C YAP5P40574 245 aa9.93□□□□□ -0.82
PML39YML107C YLR271WQ06152 274 aa9.89□□□□□ -0.83
PML39YML107C VNX1P42839 908 aa9.85□□□□□ -0.83
PML39YML107C WSC3Q12215 556 aa9.82□□□□□ -0.84
PML39YML107C SPP1Q03012 353 aa9.79□□□□□ -0.84
PML39YML107C GTT3P39996 337 aa9.77□□□□□ -0.85
PML39YML107C PSD2P53037 1138 aaKnown RBP9.75□□□□□ -0.85
PML39YML107C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.72□□□□□ -0.85not detected
PML39YML107C MRM1P25270 412 aa9.7□□□□□ -0.86
PML39YML107C SSP1P38871 571 aa9.7□□□□□ -0.86
PML39YML107C PIB1Q06651 286 aa9.68□□□□□ -0.86
PML39YML107C TIF11P38912 153 aaKnown RBP9.65□□□□□ -0.86
PML39YML107C YJL171CP46992 396 aa9.57□□□□□ -0.88
PML39YML107C ULI1P43604 169 aa9.55□□□□□ -0.88
PML39YML107C AIR2Q12476 344 aaKnown RBP9.54□□□□□ -0.88
PML39YML107C CST9Q06032 482 aa9.52□□□□□ -0.89
PML39YML107C FKH1P40466 484 aa9.51□□□□□ -0.89
PML39YML107C LDB19Q12502 818 aa9.51□□□□□ -0.89
PML39YML107C MGA2P40578 1113 aa9.5□□□□□ -0.89
PML39YML107C YMR1P47147 688 aaKnown RBP RIP-Chip data9.49□□□□□ -0.89not detected
PML39YML107C RTG3P38165 486 aa9.48□□□□□ -0.89
PML39YML107C DBP1P24784 617 aaKnown RBP9.46□□□□□ -0.9
PML39YML107C IOC2Q12072 812 aa9.46□□□□□ -0.9
PML39YML107C VPS29P38759 282 aa9.45□□□□□ -0.9
PML39YML107C MSB4Q12317 492 aa9.45□□□□□ -0.9
PML39YML107C EAP1P36041 632 aaKnown RBP9.44□□□□□ -0.9
PML39YML107C YFR006WP43590 535 aa9.44□□□□□ -0.9
PML39YML107C SET4P42948 560 aa9.42□□□□□ -0.9
PML39YML107C YOL036WQ08206 761 aa9.4□□□□□ -0.9
PML39YML107C BMT6Q12291 365 aa9.38□□□□□ -0.91
PML39YML107C RQC2Q12532 1038 aaKnown RBP9.38□□□□□ -0.91
PML39YML107C STS1P38637 319 aa9.36□□□□□ -0.91
PML39YML107C TRP5P00931 707 aaKnown RBP9.35□□□□□ -0.91
PML39YML107C VMA1P17255 1071 aaKnown RBP9.34□□□□□ -0.91
PML39YML107C RTG1P32607 177 aa9.33□□□□□ -0.92
PML39YML107C RCR1P38212 213 aa9.31□□□□□ -0.92
PML39YML107C NCR1Q12200 1170 aa9.3□□□□□ -0.92
PML39YML107C SAM3Q08986 587 aa9.28□□□□□ -0.92
PML39YML107C YNL035CP53962 389 aaKnown RBP9.26□□□□□ -0.93
PML39YML107C SEC61P32915 480 aa9.23□□□□□ -0.93
PML39YML107C TFG1P41895 735 aaPredicted RBP9.21□□□□□ -0.94
PML39YML107C GYP5Q12344 894 aa9.2□□□□□ -0.94
PML39YML107C ABP1P15891 592 aaKnown RBP9.15□□□□□ -0.94
PML39YML107C DCW1P36091 449 aa9.14□□□□□ -0.95
PML39YML107C HTA1P04911 132 aaKnown RBP9.13□□□□□ -0.95
PML39YML107C HTA2P04912 132 aa9.13□□□□□ -0.95
PML39YML107C JIP4Q03361 876 aa9.13□□□□□ -0.95
PML39YML107C DAN4P47179 1161 aa9.1□□□□□ -0.95
PML39YML107C SAP30P38429 201 aa9.08□□□□□ -0.96
Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms