RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W MON2P48563 1636 aaPredicted RBP7.42□□□□□ -1.22
USA1YML029W INO80P53115 1489 aa7.39□□□□□ -1.23
USA1YML029W TCB3Q03640 1545 aaKnown RBP7.35□□□□□ -1.23
USA1YML029W SGS1P35187 1447 aa7.32□□□□□ -1.24
USA1YML029W TY1B-DR4Q07793 1604 aa7.23□□□□□ -1.25
USA1YML029W SWR1Q05471 1514 aa7.14□□□□□ -1.27
USA1YML029W KOG1P38873 1557 aa7.03□□□□□ -1.28
USA1YML029W HSL1P34244 1518 aa7□□□□□ -1.29
USA1YML029W DRS1P32892 752 aaKnown RBP6.99□□□□□ -1.29
USA1YML029W DNA2P38859 1522 aa6.99□□□□□ -1.29
USA1YML029W SPT6P23615 1451 aaKnown RBP6.98□□□□□ -1.29
USA1YML029W SPA2P23201 1466 aaKnown RBP6.92□□□□□ -1.3
USA1YML029W SSN2P38931 1420 aa6.87□□□□□ -1.31
USA1YML029W HIR3P47171 1648 aa6.86□□□□□ -1.31
USA1YML029W THO2P53552 1597 aaKnown RBP6.81□□□□□ -1.32
USA1YML029W BUD4P47136 1447 aa6.74□□□□□ -1.33
USA1YML029W XRN1P22147 1528 aaKnown RBP6.73□□□□□ -1.33
USA1YML029W SIN3P22579 1536 aa6.7□□□□□ -1.34
USA1YML029W ECM5Q03214 1411 aa6.69□□□□□ -1.34
USA1YML029W REV3P14284 1504 aa6.67□□□□□ -1.34
USA1YML029W MDS3P53094 1487 aa6.62□□□□□ -1.35
USA1YML029W PEP1P32319 1579 aa6.61□□□□□ -1.35
USA1YML029W ATG2P53855 1592 aa6.6□□□□□ -1.35
USA1YML029W SSK2P53599 1579 aa6.59□□□□□ -1.35
USA1YML029W RSE1Q04693 1361 aaKnown RBP6.56□□□□□ -1.36
USA1YML029W ESP1Q03018 1630 aa6.53□□□□□ -1.36
USA1YML029W MYO2P19524 1574 aaKnown RBP6.53□□□□□ -1.36
USA1YML029W YPK9Q12697 1472 aa6.49□□□□□ -1.37
USA1YML029W SKI3P17883 1432 aaKnown RBP6.46□□□□□ -1.38
USA1YML029W TAF2P23255 1407 aa6.46□□□□□ -1.38
USA1YML029W BPT1P14772 1559 aa6.44□□□□□ -1.38
USA1YML029W RPO31P04051 1460 aa6.42□□□□□ -1.38
USA1YML029W SCC2Q04002 1493 aa6.41□□□□□ -1.38
USA1YML029W TFA1P36100 482 aa6.39□□□□□ -1.39
USA1YML029W UFD4P33202 1483 aa6.36□□□□□ -1.39
USA1YML029W MTC1P47018 478 aaKnown RBP6.36□□□□□ -1.39
USA1YML029W POL1P13382 1468 aa6.36□□□□□ -1.39
USA1YML029W YCF1P39109 1515 aaKnown RBP6.35□□□□□ -1.39
USA1YML029W TOP2P06786 1428 aaKnown RBP6.34□□□□□ -1.39
USA1YML029W SMC4Q12267 1418 aa6.3□□□□□ -1.4
USA1YML029W BFR2Q06631 534 aaKnown RBP6.3□□□□□ -1.4
USA1YML029W RKR1Q04781 1562 aa6.29□□□□□ -1.4
USA1YML029W YOR1P53049 1477 aa6.29□□□□□ -1.4
USA1YML029W TY2B-LR1P0C2J3 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-FP0CX63 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-GR2P0CX64 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-CP25384 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-DR2Q03494 1770 aa6.28□□□□□ -1.4
USA1YML029W TY1B-DR1Q03855 1755 aa6.28□□□□□ -1.4
USA1YML029W TY2B-DR3Q07791 1770 aaKnown RBP6.28□□□□□ -1.4
USA1YML029W TY2B-OR1Q12113 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-DR1Q12472 1770 aa6.28□□□□□ -1.4
USA1YML029W TY2B-OR2Q12501 1770 aa6.28□□□□□ -1.4
USA1YML029W CDC25P04821 1589 aa6.27□□□□□ -1.41
USA1YML029W CHD1P32657 1468 aa6.27□□□□□ -1.41
USA1YML029W STU1P38198 1513 aa6.27□□□□□ -1.41
USA1YML029W YTA7P40340 1379 aa6.26□□□□□ -1.41
USA1YML029W TY1B-BRQ12193 1756 aa6.24□□□□□ -1.41
USA1YML029W TY1B-GR3Q12316 1755 aa6.24□□□□□ -1.41
USA1YML029W TY1B-ORQ92393 1755 aa6.24□□□□□ -1.41
USA1YML029W PAN1P32521 1480 aa6.24□□□□□ -1.41
USA1YML029W MYO4P32492 1471 aa6.23□□□□□ -1.41
USA1YML029W MET5P47169 1442 aa6.23□□□□□ -1.41
USA1YML029W TY2B-BQ12491 1770 aa6.22□□□□□ -1.41
USA1YML029W TY1B-DR3Q99231 1755 aa6.22□□□□□ -1.41
USA1YML029W MMS22Q06164 1454 aa6.22□□□□□ -1.41
USA1YML029W TY1B-HO13535 1793 aa6.21□□□□□ -1.41
USA1YML029W TY1B-DR5P0C2I2 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-DR6P0C2I3 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-LR2P0C2I5 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-LR3P0C2I6 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W TY1B-PR1P0C2I9 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W TY1B-PR2P0C2J0 1756 aa6.21□□□□□ -1.41
USA1YML029W TY1B-PR3P0C2J1 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W TY1B-JR1P47098 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-ML2Q03434 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W TY1B-ER1Q03612 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-ML1Q04711 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W TY1B-GR2Q12269 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-OLQ12273 1755 aa6.21□□□□□ -1.41
USA1YML029W TY1B-PLQ12414 1755 aaKnown RBP6.21□□□□□ -1.41
USA1YML029W ESC1Q03661 1658 aaKnown RBP6.18□□□□□ -1.42
USA1YML029W SPP41P38904 1435 aa6.17□□□□□ -1.42
USA1YML029W RPA190P10964 1664 aaKnown RBP6.16□□□□□ -1.42
USA1YML029W TRM732Q03496 1420 aa6.14□□□□□ -1.43
USA1YML029W DNF1P32660 1571 aa6.13□□□□□ -1.43
USA1YML029W TSC11P40061 1430 aa6.13□□□□□ -1.43
USA1YML029W STH1P32597 1359 aa6.12□□□□□ -1.43
USA1YML029W VTH1P40438 1549 aa6.12□□□□□ -1.43
USA1YML029W VTH2P40890 1549 aa6.12□□□□□ -1.43
USA1YML029W TAF7Q05021 590 aa6.11□□□□□ -1.43
USA1YML029W LTE1P07866 1435 aa6.1□□□□□ -1.43
USA1YML029W TY1B-JR2P47100 1755 aaKnown RBP6.09□□□□□ -1.43
USA1YML029W TY1B-ER2Q03619 1755 aa6.09□□□□□ -1.43
USA1YML029W TY1B-MR1Q04214 1755 aa6.09□□□□□ -1.43
USA1YML029W TY1B-MR2Q04670 1755 aaKnown RBP6.09□□□□□ -1.43
USA1YML029W TY1B-LR1Q12088 1755 aaKnown RBP6.09□□□□□ -1.43
USA1YML029W TY1B-NL1Q12112 1755 aa6.09□□□□□ -1.43
USA1YML029W TY1B-GR1Q12141 1755 aa6.09□□□□□ -1.43
USA1YML029W TY1B-BLQ12490 1755 aa6.09□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 59.2 ms