RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeastyeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC42YLR229C DRS1P32892 752 aaKnown RBP10.85□□□□□ -0.67
CDC42YLR229C MTC1P47018 478 aaKnown RBP10.63□□□□□ -0.71
CDC42YLR229C BFR2Q06631 534 aaKnown RBP9.45□□□□□ -0.9
CDC42YLR229C DIP2Q12220 943 aaPredicted RBP9.17□□□□□ -0.94
CDC42YLR229C AVT3P36062 692 aa9□□□□□ -0.97
CDC42YLR229C TFA1P36100 482 aa8.87□□□□□ -0.99
CDC42YLR229C FAP1P53971 965 aa8.75□□□□□ -1.01
CDC42YLR229C ISW2Q08773 1120 aa8.73□□□□□ -1.01
CDC42YLR229C RSE1Q04693 1361 aaKnown RBP8.66□□□□□ -1.02
CDC42YLR229C RPG1P38249 964 aaKnown RBP8.53□□□□□ -1.04
CDC42YLR229C PRI1P10363 409 aa8.45□□□□□ -1.06
CDC42YLR229C AAD16Q02895 342 aa8.34□□□□□ -1.07
CDC42YLR229C RPL17AP05740 184 aaKnown RBP8.31□□□□□ -1.08
CDC42YLR229C RPL17BP46990 184 aaKnown RBP8.31□□□□□ -1.08
CDC42YLR229C REB1P21538 810 aa8.28□□□□□ -1.08
CDC42YLR229C PRY3P47033 881 aa8.12□□□□□ -1.11
CDC42YLR229C TSR3Q12094 313 aaKnown RBP8.06□□□□□ -1.12
CDC42YLR229C SPT21P35209 758 aa7.9□□□□□ -1.14
CDC42YLR229C RQC2Q12532 1038 aaKnown RBP7.89□□□□□ -1.15
CDC42YLR229C RIM101P33400 625 aa7.84□□□□□ -1.15
CDC42YLR229C MRPL32P25348 183 aa7.83□□□□□ -1.16
CDC42YLR229C PTP3P40048 928 aa7.75□□□□□ -1.17
CDC42YLR229C YIL055CP40523 627 aaKnown RBP7.66□□□□□ -1.18
CDC42YLR229C HAA1Q12753 694 aaKnown RBP7.66□□□□□ -1.18
CDC42YLR229C YKR023WP36119 530 aaKnown RBP7.62□□□□□ -1.19
CDC42YLR229C SSP1P38871 571 aa7.61□□□□□ -1.19
CDC42YLR229C YAH1Q12184 172 aaKnown RBP7.61□□□□□ -1.19
CDC42YLR229C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.57□□□□□ -1.2not detected
CDC42YLR229C SGS1P35187 1447 aa7.56□□□□□ -1.2
CDC42YLR229C OXP1P28273 1286 aa7.56□□□□□ -1.2
CDC42YLR229C HOP09932 586 aa7.53□□□□□ -1.2
CDC42YLR229C TFC8Q12308 588 aa7.51□□□□□ -1.21
CDC42YLR229C DCD1P06773 312 aa7.46□□□□□ -1.22
CDC42YLR229C CDC27P38042 758 aa7.44□□□□□ -1.22
CDC42YLR229C RSM7P47150 247 aa7.44□□□□□ -1.22
CDC42YLR229C YCK3P39962 524 aa7.42□□□□□ -1.22
CDC42YLR229C YLR271WQ06152 274 aa7.41□□□□□ -1.22
CDC42YLR229C INO80P53115 1489 aa7.4□□□□□ -1.22
CDC42YLR229C DMA1P38823 416 aa7.38□□□□□ -1.23
CDC42YLR229C MGA2P40578 1113 aa7.35□□□□□ -1.23
CDC42YLR229C BBC1P47068 1157 aa7.34□□□□□ -1.23
CDC42YLR229C AI2P03876 854 aa7.3□□□□□ -1.24
CDC42YLR229C TCB3Q03640 1545 aaKnown RBP7.3□□□□□ -1.24
CDC42YLR229C BCH2P36122 765 aa7.29□□□□□ -1.24
CDC42YLR229C YGL015CP33199 130 aa7.25□□□□□ -1.25
CDC42YLR229C SCY1P53009 804 aa7.22□□□□□ -1.25
CDC42YLR229C UBP10P53874 792 aaPredicted RBP7.22□□□□□ -1.25
CDC42YLR229C SPA2P23201 1466 aaKnown RBP7.22□□□□□ -1.25
CDC42YLR229C EPS1P40557 701 aa7.21□□□□□ -1.26
CDC42YLR229C SSN2P38931 1420 aa7.2□□□□□ -1.26
CDC42YLR229C PSD2P53037 1138 aaKnown RBP7.2□□□□□ -1.26
CDC42YLR229C CST9Q06032 482 aa7.2□□□□□ -1.26
CDC42YLR229C TY1B-DR4Q07793 1604 aa7.17□□□□□ -1.26
CDC42YLR229C MAP2P38174 421 aaKnown RBP7.16□□□□□ -1.26
CDC42YLR229C MON2P48563 1636 aaPredicted RBP7.15□□□□□ -1.27
CDC42YLR229C BDF1P35817 686 aa7.14□□□□□ -1.27
CDC42YLR229C SLX5P32828 619 aaKnown RBP7.11□□□□□ -1.27
CDC42YLR229C MRM1P25270 412 aa7.1□□□□□ -1.27
CDC42YLR229C HSL1P34244 1518 aa7.06□□□□□ -1.28
CDC42YLR229C SPT6P23615 1451 aaKnown RBP7.04□□□□□ -1.28
CDC42YLR229C RTG3P38165 486 aa7.03□□□□□ -1.28
CDC42YLR229C SWR1Q05471 1514 aa7.02□□□□□ -1.29
CDC42YLR229C TIF4632P39936 914 aaKnown RBP7.01□□□□□ -1.29
CDC42YLR229C RAM2P29703 316 aa6.93□□□□□ -1.3
CDC42YLR229C HIR3P47171 1648 aa6.93□□□□□ -1.3
CDC42YLR229C RCR1P38212 213 aa6.91□□□□□ -1.3
CDC42YLR229C XRN1P22147 1528 aaKnown RBP6.9□□□□□ -1.31
CDC42YLR229C MAK11P20484 414 aaKnown RBP6.89□□□□□ -1.31
CDC42YLR229C SET1P38827 1080 aaKnown RBP6.89□□□□□ -1.31
CDC42YLR229C YMR1P47147 688 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
CDC42YLR229C SAS10Q12136 610 aaPredicted RBP6.88□□□□□ -1.31
CDC42YLR229C IFH1P39520 1085 aa6.87□□□□□ -1.31
CDC42YLR229C TGL3P40308 642 aa6.85□□□□□ -1.31
CDC42YLR229C VPS29P38759 282 aa6.83□□□□□ -1.32
CDC42YLR229C YOR238WQ08634 303 aa6.83□□□□□ -1.32
CDC42YLR229C DNA2P38859 1522 aa6.82□□□□□ -1.32
CDC42YLR229C YAP5P40574 245 aa6.82□□□□□ -1.32
CDC42YLR229C DBP1P24784 617 aaKnown RBP6.81□□□□□ -1.32
CDC42YLR229C MIF2P35201 549 aa6.81□□□□□ -1.32
CDC42YLR229C REV3P14284 1504 aa6.8□□□□□ -1.32
CDC42YLR229C KOG1P38873 1557 aa6.79□□□□□ -1.32
CDC42YLR229C NSR1P27476 414 aaKnown RBP RIP-Chip data6.78□□□□□ -1.32not detected
CDC42YLR229C COQ8P27697 501 aa6.78□□□□□ -1.32
CDC42YLR229C YFR006WP43590 535 aa6.78□□□□□ -1.32
CDC42YLR229C CKB1P43639 278 aa6.78□□□□□ -1.32
CDC42YLR229C VPS70P47161 811 aa6.78□□□□□ -1.32
CDC42YLR229C LEU3P08638 886 aa6.75□□□□□ -1.33
CDC42YLR229C SPB4P25808 606 aaPredicted RBP6.75□□□□□ -1.33
CDC42YLR229C STS1P38637 319 aa6.75□□□□□ -1.33
CDC42YLR229C SIN3P22579 1536 aa6.75□□□□□ -1.33
CDC42YLR229C LEO1P38439 464 aa6.74□□□□□ -1.33
CDC42YLR229C PIB1Q06651 286 aa6.74□□□□□ -1.33
CDC42YLR229C YPR148CQ06523 435 aa6.73□□□□□ -1.33
CDC42YLR229C NOP53Q12080 455 aaKnown RBP6.73□□□□□ -1.33
CDC42YLR229C THO2P53552 1597 aaKnown RBP6.73□□□□□ -1.33
CDC42YLR229C GTT3P39996 337 aa6.72□□□□□ -1.33
CDC42YLR229C TAF2P23255 1407 aa6.72□□□□□ -1.33
CDC42YLR229C SSK2P53599 1579 aa6.7□□□□□ -1.34
CDC42YLR229C BUD4P47136 1447 aa6.7□□□□□ -1.34
CDC42YLR229C ECM5Q03214 1411 aa6.68□□□□□ -1.34
Retrieved 100 of 5,963 RNA–protein pairs in 31.9 ms