RNA–Protein interactions for RNA: YKR092C

SRP40, Transcript of Nucleolar serine-rich protein, yeastyeast

Gene SRP40, Length 1,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SRP40YKR092C MTC1P47018 478 aaKnown RBP12.97□□□□□ -0.33
SRP40YKR092C DRS1P32892 752 aaKnown RBP12.01□□□□□ -0.49
SRP40YKR092C FAP1P53971 965 aa11.83□□□□□ -0.52
SRP40YKR092C PRY3P47033 881 aa11.11□□□□□ -0.63
SRP40YKR092C PRI1P10363 409 aa10.99□□□□□ -0.65
SRP40YKR092C AAD16Q02895 342 aa10.93□□□□□ -0.66
SRP40YKR092C ISW2Q08773 1120 aa10.77□□□□□ -0.69
SRP40YKR092C RPG1P38249 964 aaKnown RBP10.68□□□□□ -0.7
SRP40YKR092C DIP2Q12220 943 aaPredicted RBP10.56□□□□□ -0.72
SRP40YKR092C YCK3P39962 524 aa10.49□□□□□ -0.73
SRP40YKR092C TSR3Q12094 313 aaKnown RBP10.41□□□□□ -0.74
SRP40YKR092C HAA1Q12753 694 aaKnown RBP10.38□□□□□ -0.75
SRP40YKR092C RSE1Q04693 1361 aaKnown RBP10.24□□□□□ -0.77
SRP40YKR092C AVT3P36062 692 aa10.14□□□□□ -0.79
SRP40YKR092C MRPL32P25348 183 aa9.98□□□□□ -0.81
SRP40YKR092C RPL17AP05740 184 aaKnown RBP9.94□□□□□ -0.82
SRP40YKR092C RPL17BP46990 184 aaKnown RBP9.94□□□□□ -0.82
SRP40YKR092C BFR2Q06631 534 aaKnown RBP9.94□□□□□ -0.82
SRP40YKR092C REB1P21538 810 aa9.9□□□□□ -0.82
SRP40YKR092C YGL015CP33199 130 aa9.58□□□□□ -0.88
SRP40YKR092C SPT21P35209 758 aa9.48□□□□□ -0.89
SRP40YKR092C CDC27P38042 758 aa9.48□□□□□ -0.89
SRP40YKR092C YKR023WP36119 530 aaKnown RBP9.41□□□□□ -0.9
SRP40YKR092C TFA1P36100 482 aa9.32□□□□□ -0.92
SRP40YKR092C HOP09932 586 aa9.24□□□□□ -0.93
SRP40YKR092C DCD1P06773 312 aa9.22□□□□□ -0.93
SRP40YKR092C TFC8Q12308 588 aa9.22□□□□□ -0.93
SRP40YKR092C MAP2P38174 421 aaKnown RBP9.2□□□□□ -0.94
SRP40YKR092C UBP10P53874 792 aaPredicted RBP9.19□□□□□ -0.94
SRP40YKR092C RIM101P33400 625 aa9.13□□□□□ -0.95
SRP40YKR092C SCY1P53009 804 aa8.99□□□□□ -0.97
SRP40YKR092C BCH2P36122 765 aa8.92□□□□□ -0.98
SRP40YKR092C SLX5P32828 619 aaKnown RBP8.87□□□□□ -0.99
SRP40YKR092C BUD31P25337 157 aaPredicted RBP8.83□□□□□ -1
SRP40YKR092C OXP1P28273 1286 aa8.83□□□□□ -1
SRP40YKR092C TIF4632P39936 914 aaKnown RBP8.82□□□□□ -1
SRP40YKR092C TGL3P40308 642 aa8.77□□□□□ -1.01
SRP40YKR092C PTP3P40048 928 aa8.7□□□□□ -1.02
SRP40YKR092C YIL055CP40523 627 aaKnown RBP8.7□□□□□ -1.02
SRP40YKR092C EPS1P40557 701 aa8.69□□□□□ -1.02
SRP40YKR092C BDF1P35817 686 aa8.66□□□□□ -1.02
SRP40YKR092C YAH1Q12184 172 aaKnown RBP8.58□□□□□ -1.04
SRP40YKR092C RSM7P47150 247 aa8.56□□□□□ -1.04
SRP40YKR092C UBP9P39967 754 aa8.54□□□□□ -1.04
SRP40YKR092C AI2P03876 854 aa8.5□□□□□ -1.05
SRP40YKR092C BBC1P47068 1157 aa8.5□□□□□ -1.05
SRP40YKR092C SIS1P25294 352 aaKnown RBP8.41□□□□□ -1.06
SRP40YKR092C YLR271WQ06152 274 aa8.4□□□□□ -1.06
SRP40YKR092C MST1P07236 462 aa8.39□□□□□ -1.07
SRP40YKR092C YOR238WQ08634 303 aa8.38□□□□□ -1.07
SRP40YKR092C NSR1P27476 414 aaKnown RBP RIP-Chip data8.34□□□□□ -1.07not detected
SRP40YKR092C YBL029C-AQ3E756 94 aa8.31□□□□□ -1.08
SRP40YKR092C YAP5P40574 245 aa8.3□□□□□ -1.08
SRP40YKR092C PSD2P53037 1138 aaKnown RBP8.28□□□□□ -1.08
SRP40YKR092C SSP1P38871 571 aa8.27□□□□□ -1.09
SRP40YKR092C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.21□□□□□ -1.1not detected
SRP40YKR092C MRM1P25270 412 aa8.2□□□□□ -1.1
SRP40YKR092C VNX1P42839 908 aa8.2□□□□□ -1.1
SRP40YKR092C WSC3Q12215 556 aa8.18□□□□□ -1.1
SRP40YKR092C GTT3P39996 337 aa8.13□□□□□ -1.11
SRP40YKR092C PIB1Q06651 286 aa8.13□□□□□ -1.11
SRP40YKR092C SPP1Q03012 353 aa8.12□□□□□ -1.11
SRP40YKR092C CST9Q06032 482 aa8.12□□□□□ -1.11
SRP40YKR092C MGA2P40578 1113 aa8.07□□□□□ -1.12
SRP40YKR092C TIF11P38912 153 aaKnown RBP8.04□□□□□ -1.12
SRP40YKR092C VPS29P38759 282 aa8.01□□□□□ -1.13
SRP40YKR092C RTG3P38165 486 aa8□□□□□ -1.13
SRP40YKR092C YMR1P47147 688 aaKnown RBP RIP-Chip data7.99□□□□□ -1.13not detected
SRP40YKR092C DBP1P24784 617 aaKnown RBP7.97□□□□□ -1.13
SRP40YKR092C YFR006WP43590 535 aa7.97□□□□□ -1.13
SRP40YKR092C ULI1P43604 169 aa7.96□□□□□ -1.14
SRP40YKR092C FKH1P40466 484 aa7.94□□□□□ -1.14
SRP40YKR092C AIR2Q12476 344 aaKnown RBP7.94□□□□□ -1.14
SRP40YKR092C LDB19Q12502 818 aa7.94□□□□□ -1.14
SRP40YKR092C RCR1P38212 213 aa7.93□□□□□ -1.14
SRP40YKR092C STS1P38637 319 aa7.93□□□□□ -1.14
SRP40YKR092C IOC2Q12072 812 aa7.92□□□□□ -1.14
SRP40YKR092C MSB4Q12317 492 aa7.91□□□□□ -1.14
SRP40YKR092C RQC2Q12532 1038 aaKnown RBP7.91□□□□□ -1.14
SRP40YKR092C SET4P42948 560 aa7.9□□□□□ -1.14
SRP40YKR092C YOL036WQ08206 761 aa7.9□□□□□ -1.14
SRP40YKR092C VMA1P17255 1071 aaKnown RBP7.88□□□□□ -1.15
SRP40YKR092C YJL171CP46992 396 aa7.87□□□□□ -1.15
SRP40YKR092C EAP1P36041 632 aaKnown RBP7.86□□□□□ -1.15
SRP40YKR092C TRP5P00931 707 aaKnown RBP7.83□□□□□ -1.16
SRP40YKR092C SAM3Q08986 587 aa7.82□□□□□ -1.16
SRP40YKR092C RTG1P32607 177 aa7.78□□□□□ -1.16
SRP40YKR092C BMT6Q12291 365 aa7.77□□□□□ -1.17
SRP40YKR092C YNL035CP53962 389 aaKnown RBP7.73□□□□□ -1.17
SRP40YKR092C NCR1Q12200 1170 aa7.72□□□□□ -1.17
SRP40YKR092C GYP5Q12344 894 aa7.72□□□□□ -1.17
SRP40YKR092C SEC61P32915 480 aa7.69□□□□□ -1.18
SRP40YKR092C DMA1P38823 416 aa7.69□□□□□ -1.18
SRP40YKR092C DCW1P36091 449 aa7.68□□□□□ -1.18
SRP40YKR092C ABP1P15891 592 aaKnown RBP7.67□□□□□ -1.18
SRP40YKR092C HTA1P04911 132 aaKnown RBP7.66□□□□□ -1.18
SRP40YKR092C HTA2P04912 132 aa7.66□□□□□ -1.18
SRP40YKR092C RAM2P29703 316 aa7.66□□□□□ -1.18
SRP40YKR092C DAN4P47179 1161 aa7.64□□□□□ -1.19
SRP40YKR092C JIP4Q03361 876 aa7.64□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms