RNA–Protein interactions for RNA: YKR088C

TVP38, Transcript of Integral membrane protein, yeastyeast

Gene TVP38, Length 1,014 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TVP38YKR088C MTC1P47018 478 aaKnown RBP18.05■□□□□ 0.48
TVP38YKR088C FAP1P53971 965 aa17.01■□□□□ 0.31
TVP38YKR088C DRS1P32892 752 aaKnown RBP16.25■□□□□ 0.19
TVP38YKR088C PRY3P47033 881 aa15.98■□□□□ 0.15
TVP38YKR088C AAD16Q02895 342 aa15.57■□□□□ 0.08
TVP38YKR088C PRI1P10363 409 aa15.56■□□□□ 0.08
TVP38YKR088C ISW2Q08773 1120 aa15.15■□□□□ 0.02
TVP38YKR088C HAA1Q12753 694 aaKnown RBP14.98□□□□□ -0.01
TVP38YKR088C RPG1P38249 964 aaKnown RBP14.97□□□□□ -0.01
TVP38YKR088C YCK3P39962 524 aa14.94□□□□□ -0.02
TVP38YKR088C TSR3Q12094 313 aaKnown RBP14.68□□□□□ -0.06
TVP38YKR088C DIP2Q12220 943 aaPredicted RBP14.47□□□□□ -0.09
TVP38YKR088C RSE1Q04693 1361 aaKnown RBP14.18□□□□□ -0.14
TVP38YKR088C MRPL32P25348 183 aa14.16□□□□□ -0.14
TVP38YKR088C REB1P21538 810 aa13.79□□□□□ -0.2
TVP38YKR088C RPL17AP05740 184 aaKnown RBP13.76□□□□□ -0.21
TVP38YKR088C YGL015CP33199 130 aa13.76□□□□□ -0.21
TVP38YKR088C RPL17BP46990 184 aaKnown RBP13.76□□□□□ -0.21
TVP38YKR088C AVT3P36062 692 aa13.72□□□□□ -0.21
TVP38YKR088C CDC27P38042 758 aa13.25□□□□□ -0.29
TVP38YKR088C BFR2Q06631 534 aaKnown RBP13.21□□□□□ -0.29
TVP38YKR088C YKR023WP36119 530 aaKnown RBP13.07□□□□□ -0.32
TVP38YKR088C SPT21P35209 758 aa13.06□□□□□ -0.32
TVP38YKR088C UBP10P53874 792 aaPredicted RBP13.02□□□□□ -0.33
TVP38YKR088C MAP2P38174 421 aaKnown RBP12.94□□□□□ -0.34
TVP38YKR088C BUD31P25337 157 aaPredicted RBP12.84□□□□□ -0.35
TVP38YKR088C HOP09932 586 aa12.82□□□□□ -0.36
TVP38YKR088C TFC8Q12308 588 aa12.82□□□□□ -0.36
TVP38YKR088C DCD1P06773 312 aa12.77□□□□□ -0.37
TVP38YKR088C SCY1P53009 804 aa12.59□□□□□ -0.39
TVP38YKR088C TIF4632P39936 914 aaKnown RBP12.54□□□□□ -0.4
TVP38YKR088C SLX5P32828 619 aaKnown RBP12.49□□□□□ -0.41
TVP38YKR088C RIM101P33400 625 aa12.49□□□□□ -0.41
TVP38YKR088C TGL3P40308 642 aa12.46□□□□□ -0.41
TVP38YKR088C BCH2P36122 765 aa12.38□□□□□ -0.43
TVP38YKR088C UBP9P39967 754 aa12.32□□□□□ -0.44
TVP38YKR088C SIS1P25294 352 aaKnown RBP12.22□□□□□ -0.45
TVP38YKR088C EPS1P40557 701 aa12.04□□□□□ -0.48
TVP38YKR088C OXP1P28273 1286 aa12.03□□□□□ -0.48
TVP38YKR088C BDF1P35817 686 aa12□□□□□ -0.49
TVP38YKR088C YIL055CP40523 627 aaKnown RBP11.96□□□□□ -0.49
TVP38YKR088C PTP3P40048 928 aa11.95□□□□□ -0.5
TVP38YKR088C MST1P07236 462 aa11.82□□□□□ -0.52
TVP38YKR088C YOR238WQ08634 303 aa11.81□□□□□ -0.52
TVP38YKR088C BBC1P47068 1157 aa11.78□□□□□ -0.52
TVP38YKR088C RSM7P47150 247 aa11.74□□□□□ -0.53
TVP38YKR088C YBL029C-AQ3E756 94 aa11.74□□□□□ -0.53
TVP38YKR088C NSR1P27476 414 aaKnown RBP RIP-Chip data11.7□□□□□ -0.54 RIP-Chip
TVP38YKR088C AI2P03876 854 aa11.67□□□□□ -0.54
TVP38YKR088C YAP5P40574 245 aa11.64□□□□□ -0.55
TVP38YKR088C YAH1Q12184 172 aaKnown RBP11.64□□□□□ -0.55
TVP38YKR088C VNX1P42839 908 aa11.6□□□□□ -0.55
TVP38YKR088C SPP1Q03012 353 aa11.53□□□□□ -0.56
TVP38YKR088C WSC3Q12215 556 aa11.49□□□□□ -0.57
TVP38YKR088C TFA1P36100 482 aa11.46□□□□□ -0.57
TVP38YKR088C GTT3P39996 337 aa11.43□□□□□ -0.58
TVP38YKR088C YLR271WQ06152 274 aa11.39□□□□□ -0.59
TVP38YKR088C TIF11P38912 153 aaKnown RBP11.37□□□□□ -0.59
TVP38YKR088C YJL171CP46992 396 aa11.3□□□□□ -0.6
TVP38YKR088C PSD2P53037 1138 aaKnown RBP11.29□□□□□ -0.6
TVP38YKR088C AIR2Q12476 344 aaKnown RBP11.29□□□□□ -0.6
TVP38YKR088C FKH1P40466 484 aa11.26□□□□□ -0.61
TVP38YKR088C PIB1Q06651 286 aa11.24□□□□□ -0.61
TVP38YKR088C MRM1P25270 412 aa11.22□□□□□ -0.61
TVP38YKR088C ULI1P43604 169 aa11.19□□□□□ -0.62
TVP38YKR088C LDB19Q12502 818 aa11.19□□□□□ -0.62
TVP38YKR088C ARP8Q12386 881 aaKnown RBP RIP-Chip data11.16□□□□□ -0.62not detected
TVP38YKR088C IOC2Q12072 812 aa11.13□□□□□ -0.63
TVP38YKR088C SSP1P38871 571 aa11.12□□□□□ -0.63
TVP38YKR088C MSB4Q12317 492 aa11.11□□□□□ -0.63
TVP38YKR088C EAP1P36041 632 aaKnown RBP11.08□□□□□ -0.64
TVP38YKR088C BMT6Q12291 365 aa11.08□□□□□ -0.64
TVP38YKR088C YMR1P47147 688 aaKnown RBP RIP-Chip data11.02□□□□□ -0.65not detected
TVP38YKR088C SET4P42948 560 aa10.99□□□□□ -0.65
TVP38YKR088C YOL036WQ08206 761 aa10.99□□□□□ -0.65
TVP38YKR088C DBP1P24784 617 aaKnown RBP10.98□□□□□ -0.65
TVP38YKR088C RTG3P38165 486 aa10.96□□□□□ -0.65
TVP38YKR088C RTG1P32607 177 aa10.95□□□□□ -0.66
TVP38YKR088C VPS29P38759 282 aa10.95□□□□□ -0.66
TVP38YKR088C TRP5P00931 707 aaKnown RBP10.94□□□□□ -0.66
TVP38YKR088C CST9Q06032 482 aa10.94□□□□□ -0.66
TVP38YKR088C MGA2P40578 1113 aa10.93□□□□□ -0.66
TVP38YKR088C YFR006WP43590 535 aa10.91□□□□□ -0.66
TVP38YKR088C NCR1Q12200 1170 aa10.91□□□□□ -0.66
TVP38YKR088C VMA1P17255 1071 aaKnown RBP10.89□□□□□ -0.67
TVP38YKR088C YNL035CP53962 389 aaKnown RBP10.87□□□□□ -0.67
TVP38YKR088C SEC61P32915 480 aa10.85□□□□□ -0.67
TVP38YKR088C STS1P38637 319 aa10.85□□□□□ -0.67
TVP38YKR088C SAM3Q08986 587 aa10.83□□□□□ -0.68
TVP38YKR088C TFG1P41895 735 aaPredicted RBP10.78□□□□□ -0.68
TVP38YKR088C RCR1P38212 213 aa10.73□□□□□ -0.69
TVP38YKR088C ABP1P15891 592 aaKnown RBP10.72□□□□□ -0.69
TVP38YKR088C JIP4Q03361 876 aa10.7□□□□□ -0.7
TVP38YKR088C GYP5Q12344 894 aa10.69□□□□□ -0.7
TVP38YKR088C DAN4P47179 1161 aa10.65□□□□□ -0.7
TVP38YKR088C HTA1P04911 132 aaKnown RBP10.64□□□□□ -0.71
TVP38YKR088C HTA2P04912 132 aa10.64□□□□□ -0.71
TVP38YKR088C SAP30P38429 201 aa10.64□□□□□ -0.71
TVP38YKR088C DCW1P36091 449 aa10.6□□□□□ -0.71
TVP38YKR088C YDL129WQ07555 291 aa10.6□□□□□ -0.71
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms