RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeastyeast

Gene VPS55, Length 423 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS55YJR044C MTC1P47018 478 aaKnown RBP9.88□□□□□ -0.83
VPS55YJR044C FAP1P53971 965 aa9.43□□□□□ -0.9
VPS55YJR044C PRY3P47033 881 aa8.89□□□□□ -0.99
VPS55YJR044C DRS1P32892 752 aaKnown RBP8.82□□□□□ -1
VPS55YJR044C PRI1P10363 409 aa8.57□□□□□ -1.04
VPS55YJR044C AAD16Q02895 342 aa8.57□□□□□ -1.04
VPS55YJR044C YCK3P39962 524 aa8.4□□□□□ -1.06
VPS55YJR044C ISW2Q08773 1120 aa8.26□□□□□ -1.09
VPS55YJR044C RPG1P38249 964 aaKnown RBP8.23□□□□□ -1.09
VPS55YJR044C HAA1Q12753 694 aaKnown RBP8.23□□□□□ -1.09
VPS55YJR044C TSR3Q12094 313 aaKnown RBP8.13□□□□□ -1.11
VPS55YJR044C DIP2Q12220 943 aaPredicted RBP7.87□□□□□ -1.15
VPS55YJR044C MRPL32P25348 183 aa7.75□□□□□ -1.17
VPS55YJR044C RSE1Q04693 1361 aaKnown RBP7.71□□□□□ -1.17
VPS55YJR044C RPL17AP05740 184 aaKnown RBP7.54□□□□□ -1.2
VPS55YJR044C RPL17BP46990 184 aaKnown RBP7.54□□□□□ -1.2
VPS55YJR044C YGL015CP33199 130 aa7.53□□□□□ -1.2
VPS55YJR044C REB1P21538 810 aa7.52□□□□□ -1.21
VPS55YJR044C AVT3P36062 692 aa7.45□□□□□ -1.22
VPS55YJR044C CDC27P38042 758 aa7.34□□□□□ -1.23
VPS55YJR044C YKR023WP36119 530 aaKnown RBP7.2□□□□□ -1.26
VPS55YJR044C SPT21P35209 758 aa7.16□□□□□ -1.26
VPS55YJR044C MAP2P38174 421 aaKnown RBP7.15□□□□□ -1.26
VPS55YJR044C BUD31P25337 157 aaPredicted RBP7.11□□□□□ -1.27
VPS55YJR044C UBP10P53874 792 aaPredicted RBP7.11□□□□□ -1.27
VPS55YJR044C BFR2Q06631 534 aaKnown RBP7.11□□□□□ -1.27
VPS55YJR044C DCD1P06773 312 aa7.09□□□□□ -1.27
VPS55YJR044C HOP09932 586 aa7.08□□□□□ -1.28
VPS55YJR044C TFC8Q12308 588 aa7.03□□□□□ -1.28
VPS55YJR044C SCY1P53009 804 aa6.94□□□□□ -1.3
VPS55YJR044C SLX5P32828 619 aaKnown RBP6.83□□□□□ -1.32
VPS55YJR044C TIF4632P39936 914 aaKnown RBP6.81□□□□□ -1.32
VPS55YJR044C BCH2P36122 765 aa6.8□□□□□ -1.32
VPS55YJR044C RIM101P33400 625 aa6.79□□□□□ -1.32
VPS55YJR044C TGL3P40308 642 aa6.78□□□□□ -1.32
VPS55YJR044C SIS1P25294 352 aaKnown RBP6.74□□□□□ -1.33
VPS55YJR044C UBP9P39967 754 aa6.7□□□□□ -1.34
VPS55YJR044C EPS1P40557 701 aa6.6□□□□□ -1.35
VPS55YJR044C OXP1P28273 1286 aa6.59□□□□□ -1.35
VPS55YJR044C BDF1P35817 686 aa6.57□□□□□ -1.36
VPS55YJR044C PTP3P40048 928 aa6.5□□□□□ -1.37
VPS55YJR044C YBL029C-AQ3E756 94 aa6.49□□□□□ -1.37
VPS55YJR044C YIL055CP40523 627 aaKnown RBP6.46□□□□□ -1.38
VPS55YJR044C MST1P07236 462 aa6.44□□□□□ -1.38
VPS55YJR044C YOR238WQ08634 303 aa6.43□□□□□ -1.38
VPS55YJR044C YAH1Q12184 172 aaKnown RBP6.37□□□□□ -1.39
VPS55YJR044C AI2P03876 854 aa6.36□□□□□ -1.39
VPS55YJR044C VNX1P42839 908 aa6.36□□□□□ -1.39
VPS55YJR044C BBC1P47068 1157 aa6.36□□□□□ -1.39
VPS55YJR044C RSM7P47150 247 aa6.36□□□□□ -1.39
VPS55YJR044C WSC3Q12215 556 aa6.34□□□□□ -1.39
VPS55YJR044C NSR1P27476 414 aaKnown RBP RIP-Chip data6.32□□□□□ -1.4not detected
VPS55YJR044C YAP5P40574 245 aa6.32□□□□□ -1.4
VPS55YJR044C SPP1Q03012 353 aa6.31□□□□□ -1.4
VPS55YJR044C PIB1Q06651 286 aa6.22□□□□□ -1.41
VPS55YJR044C GTT3P39996 337 aa6.21□□□□□ -1.42
VPS55YJR044C YLR271WQ06152 274 aa6.21□□□□□ -1.42
VPS55YJR044C AIR2Q12476 344 aaKnown RBP6.21□□□□□ -1.42
VPS55YJR044C TIF11P38912 153 aaKnown RBP6.2□□□□□ -1.42
VPS55YJR044C FKH1P40466 484 aa6.19□□□□□ -1.42
VPS55YJR044C YJL171CP46992 396 aa6.15□□□□□ -1.42
VPS55YJR044C PSD2P53037 1138 aaKnown RBP6.14□□□□□ -1.43
VPS55YJR044C MRM1P25270 412 aa6.13□□□□□ -1.43
VPS55YJR044C LDB19Q12502 818 aa6.13□□□□□ -1.43
VPS55YJR044C ULI1P43604 169 aa6.11□□□□□ -1.43
VPS55YJR044C IOC2Q12072 812 aa6.09□□□□□ -1.43
VPS55YJR044C BMT6Q12291 365 aa6.04□□□□□ -1.44
VPS55YJR044C SET4P42948 560 aa6.02□□□□□ -1.45
VPS55YJR044C YOL036WQ08206 761 aa6.01□□□□□ -1.45
VPS55YJR044C YFR006WP43590 535 aa6□□□□□ -1.45
VPS55YJR044C RTG1P32607 177 aa5.99□□□□□ -1.45
VPS55YJR044C TFA1P36100 482 aa5.99□□□□□ -1.45
VPS55YJR044C SSP1P38871 571 aa5.99□□□□□ -1.45
VPS55YJR044C CST9Q06032 482 aa5.99□□□□□ -1.45
VPS55YJR044C MSB4Q12317 492 aa5.99□□□□□ -1.45
VPS55YJR044C TRP5P00931 707 aaKnown RBP5.98□□□□□ -1.45
VPS55YJR044C DBP1P24784 617 aaKnown RBP5.98□□□□□ -1.45
VPS55YJR044C EAP1P36041 632 aaKnown RBP5.97□□□□□ -1.45
VPS55YJR044C VPS29P38759 282 aa5.97□□□□□ -1.45
VPS55YJR044C YMR1P47147 688 aaKnown RBP RIP-Chip data5.96□□□□□ -1.46not detected
VPS55YJR044C ARP8Q12386 881 aaKnown RBP RIP-Chip data5.96□□□□□ -1.46not detected
VPS55YJR044C STS1P38637 319 aa5.94□□□□□ -1.46
VPS55YJR044C VMA1P17255 1071 aaKnown RBP5.93□□□□□ -1.46
VPS55YJR044C NCR1Q12200 1170 aa5.93□□□□□ -1.46
VPS55YJR044C RTG3P38165 486 aa5.91□□□□□ -1.46
VPS55YJR044C RCR1P38212 213 aa5.9□□□□□ -1.46
VPS55YJR044C YNL035CP53962 389 aaKnown RBP5.9□□□□□ -1.46
VPS55YJR044C SEC61P32915 480 aa5.87□□□□□ -1.47
VPS55YJR044C MGA2P40578 1113 aa5.87□□□□□ -1.47
VPS55YJR044C SAM3Q08986 587 aa5.87□□□□□ -1.47
VPS55YJR044C SAP30P38429 201 aa5.82□□□□□ -1.48
VPS55YJR044C DAN4P47179 1161 aa5.81□□□□□ -1.48
VPS55YJR044C TFG1P41895 735 aaPredicted RBP5.8□□□□□ -1.48
VPS55YJR044C DCW1P36091 449 aa5.79□□□□□ -1.48
VPS55YJR044C GYP5Q12344 894 aa5.79□□□□□ -1.48
VPS55YJR044C JIP4Q03361 876 aa5.76□□□□□ -1.49
VPS55YJR044C HTA1P04911 132 aaKnown RBP5.75□□□□□ -1.49
VPS55YJR044C HTA2P04912 132 aa5.75□□□□□ -1.49
VPS55YJR044C YDL129WQ07555 291 aa5.74□□□□□ -1.49
VPS55YJR044C ABP1P15891 592 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms