RNA–Protein interactions for RNA: YJL089W

SIP4, Transcript of C6 zinc cluster transcriptional activator, yeast

Gene SIP4, Length 2,490 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIP4	YJL089W	FAP1	P53971	965 aa		5.6	□□□□□ -1.51
SIP4	YJL089W	PRY3	P47033	881 aa		5.29	□□□□□ -1.56
SIP4	YJL089W	HAA1	Q12753	694 aa	Known RBP	4.88	□□□□□ -1.63
SIP4	YJL089W	YCK3	P39962	524 aa		4.61	□□□□□ -1.67
SIP4	YJL089W	AAD16	Q02895	342 aa		4.58	□□□□□ -1.68
SIP4	YJL089W	BUD31	P25337	157 aa	Predicted RBP	4.47	□□□□□ -1.69
SIP4	YJL089W	PRI1	P10363	409 aa		4.33	□□□□□ -1.72
SIP4	YJL089W	SIS1	P25294	352 aa	Known RBP	4.26	□□□□□ -1.73
SIP4	YJL089W	YGL015C	P33199	130 aa		4.24	□□□□□ -1.73
SIP4	YJL089W	MTC1	P47018	478 aa	Known RBP	4.18	□□□□□ -1.74
SIP4	YJL089W	TSR3	Q12094	313 aa	Known RBP	4.06	□□□□□ -1.76
SIP4	YJL089W	MRPL32	P25348	183 aa		4.02	□□□□□ -1.77
SIP4	YJL089W	UBP9	P39967	754 aa		3.94	□□□□□ -1.78
SIP4	YJL089W	ISW2	Q08773	1120 aa		3.92	□□□□□ -1.78
SIP4	YJL089W	RPG1	P38249	964 aa	Known RBP	3.83	□□□□□ -1.8
SIP4	YJL089W	RGA2	Q06407	1009 aa		3.59	□□□□□ -1.84
SIP4	YJL089W	UBP10	P53874	792 aa	Predicted RBP	3.57	□□□□□ -1.84
SIP4	YJL089W	TIF4632	P39936	914 aa	Known RBP	3.54	□□□□□ -1.84
SIP4	YJL089W	YJL171C	P46992	396 aa		3.5	□□□□□ -1.85
SIP4	YJL089W	MAP2	P38174	421 aa	Known RBP	3.48	□□□□□ -1.85
SIP4	YJL089W	TGL3	P40308	642 aa		3.44	□□□□□ -1.86
SIP4	YJL089W	DRS1	P32892	752 aa	Known RBP	3.39	□□□□□ -1.87
SIP4	YJL089W	CDC27	P38042	758 aa		3.35	□□□□□ -1.87
SIP4	YJL089W	SLX5	P32828	619 aa	Known RBP	3.29	□□□□□ -1.88
SIP4	YJL089W	YBL029C-A	Q3E756	94 aa		3.29	□□□□□ -1.88
SIP4	YJL089W	REB1	P21538	810 aa		3.26	□□□□□ -1.89
SIP4	YJL089W	SPP1	Q03012	353 aa		3.24	□□□□□ -1.89
SIP4	YJL089W	BMT6	Q12291	365 aa		3.24	□□□□□ -1.89
SIP4	YJL089W	AIR2	Q12476	344 aa	Known RBP	3.23	□□□□□ -1.89
SIP4	YJL089W	SCY1	P53009	804 aa		3.19	□□□□□ -1.9
SIP4	YJL089W	RGA1	P39083	1007 aa		3.18	□□□□□ -1.9
SIP4	YJL089W	FKH1	P40466	484 aa		3.18	□□□□□ -1.9
SIP4	YJL089W	VNX1	P42839	908 aa		3.17	□□□□□ -1.9
SIP4	YJL089W	WSC3	Q12215	556 aa		3.09	□□□□□ -1.92
SIP4	YJL089W	YOR238W	Q08634	303 aa		3.08	□□□□□ -1.92
SIP4	YJL089W	RSE1	Q04693	1361 aa	Known RBP	3.08	□□□□□ -1.92
SIP4	YJL089W	DIP2	Q12220	943 aa	Predicted RBP	3.08	□□□□□ -1.92
SIP4	YJL089W	RPL17A	P05740	184 aa	Known RBP	3.05	□□□□□ -1.92
SIP4	YJL089W	TIF11	P38912	153 aa	Known RBP	3.05	□□□□□ -1.92
SIP4	YJL089W	RPL17B	P46990	184 aa	Known RBP	3.05	□□□□□ -1.92
SIP4	YJL089W	BCK2	P33306	851 aa		3.03	□□□□□ -1.92
SIP4	YJL089W	MST1	P07236	462 aa		3.02	□□□□□ -1.93
SIP4	YJL089W	LDB19	Q12502	818 aa		3	□□□□□ -1.93
SIP4	YJL089W	HO	P09932	586 aa		2.99	□□□□□ -1.93
SIP4	YJL089W	DCD1	P06773	312 aa		2.97	□□□□□ -1.93
SIP4	YJL089W	YKR023W	P36119	530 aa	Known RBP	2.96	□□□□□ -1.94
SIP4	YJL089W	GTT3	P39996	337 aa		2.95	□□□□□ -1.94
SIP4	YJL089W	TFC8	Q12308	588 aa		2.95	□□□□□ -1.94
SIP4	YJL089W	ULI1	P43604	169 aa		2.94	□□□□□ -1.94
SIP4	YJL089W	AVT3	P36062	692 aa		2.92	□□□□□ -1.94
SIP4	YJL089W	DPS1	P04802	557 aa	Known RBP	2.88	□□□□□ -1.95
SIP4	YJL089W	SPT21	P35209	758 aa		2.86	□□□□□ -1.95
SIP4	YJL089W	NCR1	Q12200	1170 aa		2.85	□□□□□ -1.95
SIP4	YJL089W	TFG1	P41895	735 aa	Predicted RBP	2.85	□□□□□ -1.95
SIP4	YJL089W	YAP5	P40574	245 aa		2.84	□□□□□ -1.95
SIP4	YJL089W	RTG1	P32607	177 aa		2.83	□□□□□ -1.96
SIP4	YJL089W	IOC2	Q12072	812 aa		2.83	□□□□□ -1.96
SIP4	YJL089W	XDJ1	P39102	459 aa		2.82	□□□□□ -1.96
SIP4	YJL089W	CHL1	P22516	861 aa	Predicted RBP	2.81	□□□□□ -1.96
SIP4	YJL089W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	2.8	□□□□□ -1.96	not detected
SIP4	YJL089W	EAP1	P36041	632 aa	Known RBP	2.79	□□□□□ -1.96
SIP4	YJL089W	BCH2	P36122	765 aa		2.79	□□□□□ -1.96
SIP4	YJL089W	SEC61	P32915	480 aa		2.74	□□□□□ -1.97
SIP4	YJL089W	VRP1	P37370	817 aa		2.74	□□□□□ -1.97
SIP4	YJL089W	SAP30	P38429	201 aa		2.73	□□□□□ -1.97
SIP4	YJL089W	PRE3	P38624	215 aa		2.71	□□□□□ -1.97
SIP4	YJL089W	YNL035C	P53962	389 aa	Known RBP	2.71	□□□□□ -1.97
SIP4	YJL089W	YPL062W	Q02781	134 aa		2.7	□□□□□ -1.98
SIP4	YJL089W	MSB4	Q12317	492 aa		2.7	□□□□□ -1.98
SIP4	YJL089W	BFR2	Q06631	534 aa	Known RBP	2.69	□□□□□ -1.98
SIP4	YJL089W	RIM101	P33400	625 aa		2.68	□□□□□ -1.98
SIP4	YJL089W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	2.66	□□□□□ -1.98	not detected
SIP4	YJL089W	EPS1	P40557	701 aa		2.66	□□□□□ -1.98
SIP4	YJL089W	SRC1	Q03707	834 aa		2.66	□□□□□ -1.98
SIP4	YJL089W	BDF1	P35817	686 aa		2.65	□□□□□ -1.98
SIP4	YJL089W	TRP5	P00931	707 aa	Known RBP	2.64	□□□□□ -1.99
SIP4	YJL089W	YDL129W	Q07555	291 aa		2.62	□□□□□ -1.99
SIP4	YJL089W	OXP1	P28273	1286 aa		2.61	□□□□□ -1.99
SIP4	YJL089W	SET4	P42948	560 aa		2.58	□□□□□ -2
SIP4	YJL089W	ELP4	Q02884	456 aa	Known RBP	2.56	□□□□□ -2
SIP4	YJL089W	YOL036W	Q08206	761 aa		2.54	□□□□□ -2
SIP4	YJL089W	TRK1	P12685	1235 aa		2.52	□□□□□ -2.01
SIP4	YJL089W	PIB1	Q06651	286 aa		2.52	□□□□□ -2.01
SIP4	YJL089W	PTP3	P40048	928 aa		2.52	□□□□□ -2.01
SIP4	YJL089W	PEX29	Q03370	554 aa		2.52	□□□□□ -2.01
SIP4	YJL089W	JIP4	Q03361	876 aa		2.51	□□□□□ -2.01
SIP4	YJL089W	AI2	P03876	854 aa		2.49	□□□□□ -2.01
SIP4	YJL089W	GAR1	P28007	205 aa	Known RBP	2.49	□□□□□ -2.01
SIP4	YJL089W	YIL055C	P40523	627 aa	Known RBP	2.48	□□□□□ -2.01
SIP4	YJL089W	RSM7	P47150	247 aa		2.48	□□□□□ -2.01
SIP4	YJL089W	BBC1	P47068	1157 aa		2.48	□□□□□ -2.01
SIP4	YJL089W	YAH1	Q12184	172 aa	Known RBP	2.46	□□□□□ -2.02
SIP4	YJL089W	MTC5	Q03897	1148 aa		2.44	□□□□□ -2.02
SIP4	YJL089W	YLR271W	Q06152	274 aa		2.43	□□□□□ -2.02
SIP4	YJL089W	PSD2	P53037	1138 aa	Known RBP	2.42	□□□□□ -2.02
SIP4	YJL089W	DAN4	P47179	1161 aa		2.41	□□□□□ -2.02
SIP4	YJL089W	MRM1	P25270	412 aa		2.4	□□□□□ -2.03
SIP4	YJL089W	MON2	P48563	1636 aa	Predicted RBP	2.38	□□□□□ -2.03
SIP4	YJL089W	INO80	P53115	1489 aa		2.37	□□□□□ -2.03
SIP4	YJL089W	ABP1	P15891	592 aa	Known RBP	2.37	□□□□□ -2.03

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms