RNA–Protein interactions for RNA: YIR009W

MSL1, Transcript of U2B component of U2 snRNP, yeastyeast

Gene MSL1, Length 336 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSL1YIR009W MTC1P47018 478 aaKnown RBP10.33□□□□□ -0.76
MSL1YIR009W DRS1P32892 752 aaKnown RBP9.67□□□□□ -0.86
MSL1YIR009W FAP1P53971 965 aa9.29□□□□□ -0.92
MSL1YIR009W PRY3P47033 881 aa8.73□□□□□ -1.01
MSL1YIR009W PRI1P10363 409 aa8.7□□□□□ -1.02
MSL1YIR009W AAD16Q02895 342 aa8.63□□□□□ -1.03
MSL1YIR009W ISW2Q08773 1120 aa8.54□□□□□ -1.04
MSL1YIR009W DIP2Q12220 943 aaPredicted RBP8.47□□□□□ -1.05
MSL1YIR009W RPG1P38249 964 aaKnown RBP8.46□□□□□ -1.06
MSL1YIR009W YCK3P39962 524 aa8.25□□□□□ -1.09
MSL1YIR009W TSR3Q12094 313 aaKnown RBP8.21□□□□□ -1.1
MSL1YIR009W AVT3P36062 692 aa8.2□□□□□ -1.1
MSL1YIR009W RSE1Q04693 1361 aaKnown RBP8.18□□□□□ -1.1
MSL1YIR009W HAA1Q12753 694 aaKnown RBP8.16□□□□□ -1.1
MSL1YIR009W BFR2Q06631 534 aaKnown RBP8.05□□□□□ -1.12
MSL1YIR009W RPL17AP05740 184 aaKnown RBP7.91□□□□□ -1.14
MSL1YIR009W RPL17BP46990 184 aaKnown RBP7.91□□□□□ -1.14
MSL1YIR009W MRPL32P25348 183 aa7.88□□□□□ -1.15
MSL1YIR009W REB1P21538 810 aa7.86□□□□□ -1.15
MSL1YIR009W SPT21P35209 758 aa7.61□□□□□ -1.19
MSL1YIR009W YGL015CP33199 130 aa7.55□□□□□ -1.2
MSL1YIR009W CDC27P38042 758 aa7.52□□□□□ -1.21
MSL1YIR009W YKR023WP36119 530 aaKnown RBP7.51□□□□□ -1.21
MSL1YIR009W RIM101P33400 625 aa7.35□□□□□ -1.23
MSL1YIR009W TFC8Q12308 588 aa7.35□□□□□ -1.23
MSL1YIR009W HOP09932 586 aa7.33□□□□□ -1.24
MSL1YIR009W DCD1P06773 312 aa7.3□□□□□ -1.24
MSL1YIR009W UBP10P53874 792 aaPredicted RBP7.3□□□□□ -1.24
MSL1YIR009W MAP2P38174 421 aaKnown RBP7.27□□□□□ -1.25
MSL1YIR009W TFA1P36100 482 aa7.13□□□□□ -1.27
MSL1YIR009W SCY1P53009 804 aa7.12□□□□□ -1.27
MSL1YIR009W BCH2P36122 765 aa7.11□□□□□ -1.27
MSL1YIR009W OXP1P28273 1286 aa7.1□□□□□ -1.27
MSL1YIR009W SLX5P32828 619 aaKnown RBP7.03□□□□□ -1.28
MSL1YIR009W TIF4632P39936 914 aaKnown RBP6.98□□□□□ -1.29
MSL1YIR009W TGL3P40308 642 aa6.97□□□□□ -1.29
MSL1YIR009W YIL055CP40523 627 aaKnown RBP6.96□□□□□ -1.3
MSL1YIR009W PTP3P40048 928 aa6.95□□□□□ -1.3
MSL1YIR009W EPS1P40557 701 aa6.93□□□□□ -1.3
MSL1YIR009W BUD31P25337 157 aaPredicted RBP6.92□□□□□ -1.3
MSL1YIR009W BDF1P35817 686 aa6.9□□□□□ -1.3
MSL1YIR009W RSM7P47150 247 aa6.88□□□□□ -1.31
MSL1YIR009W YAH1Q12184 172 aaKnown RBP6.86□□□□□ -1.31
MSL1YIR009W AI2P03876 854 aa6.81□□□□□ -1.32
MSL1YIR009W BBC1P47068 1157 aa6.8□□□□□ -1.32
MSL1YIR009W YLR271WQ06152 274 aa6.77□□□□□ -1.33
MSL1YIR009W UBP9P39967 754 aa6.72□□□□□ -1.33
MSL1YIR009W MST1P07236 462 aa6.69□□□□□ -1.34
MSL1YIR009W NSR1P27476 414 aaKnown RBP RIP-Chip data6.69□□□□□ -1.34not detected
MSL1YIR009W SSP1P38871 571 aa6.69□□□□□ -1.34
MSL1YIR009W PSD2P53037 1138 aaKnown RBP6.68□□□□□ -1.34
MSL1YIR009W YOR238WQ08634 303 aa6.65□□□□□ -1.34
MSL1YIR009W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.64□□□□□ -1.35not detected
MSL1YIR009W YAP5P40574 245 aa6.62□□□□□ -1.35
MSL1YIR009W SIS1P25294 352 aaKnown RBP6.61□□□□□ -1.35
MSL1YIR009W MRM1P25270 412 aa6.56□□□□□ -1.36
MSL1YIR009W YBL029C-AQ3E756 94 aa6.56□□□□□ -1.36
MSL1YIR009W MGA2P40578 1113 aa6.53□□□□□ -1.36
MSL1YIR009W CST9Q06032 482 aa6.53□□□□□ -1.36
MSL1YIR009W VNX1P42839 908 aa6.5□□□□□ -1.37
MSL1YIR009W GTT3P39996 337 aa6.45□□□□□ -1.38
MSL1YIR009W PIB1Q06651 286 aa6.45□□□□□ -1.38
MSL1YIR009W WSC3Q12215 556 aa6.45□□□□□ -1.38
MSL1YIR009W VPS29P38759 282 aa6.44□□□□□ -1.38
MSL1YIR009W RTG3P38165 486 aa6.43□□□□□ -1.38
MSL1YIR009W SPP1Q03012 353 aa6.43□□□□□ -1.38
MSL1YIR009W YMR1P47147 688 aaKnown RBP RIP-Chip data6.41□□□□□ -1.38not detected
MSL1YIR009W DBP1P24784 617 aaKnown RBP6.38□□□□□ -1.39
MSL1YIR009W RCR1P38212 213 aa6.38□□□□□ -1.39
MSL1YIR009W TIF11P38912 153 aaKnown RBP6.38□□□□□ -1.39
MSL1YIR009W STS1P38637 319 aa6.36□□□□□ -1.39
MSL1YIR009W YFR006WP43590 535 aa6.35□□□□□ -1.39
MSL1YIR009W MSB4Q12317 492 aa6.32□□□□□ -1.4
MSL1YIR009W VMA1P17255 1071 aaKnown RBP6.31□□□□□ -1.4
MSL1YIR009W ULI1P43604 169 aa6.31□□□□□ -1.4
MSL1YIR009W IOC2Q12072 812 aa6.31□□□□□ -1.4
MSL1YIR009W FKH1P40466 484 aa6.3□□□□□ -1.4
MSL1YIR009W YOL036WQ08206 761 aa6.3□□□□□ -1.4
MSL1YIR009W SAM3Q08986 587 aa6.29□□□□□ -1.4
MSL1YIR009W AIR2Q12476 344 aaKnown RBP6.29□□□□□ -1.4
MSL1YIR009W SET4P42948 560 aa6.28□□□□□ -1.4
MSL1YIR009W LDB19Q12502 818 aa6.28□□□□□ -1.4
MSL1YIR009W EAP1P36041 632 aaKnown RBP6.27□□□□□ -1.41
MSL1YIR009W TRP5P00931 707 aaKnown RBP6.23□□□□□ -1.41
MSL1YIR009W RAM2P29703 316 aa6.21□□□□□ -1.42
MSL1YIR009W YJL171CP46992 396 aa6.19□□□□□ -1.42
MSL1YIR009W MAK11P20484 414 aaKnown RBP6.18□□□□□ -1.42
MSL1YIR009W RTG1P32607 177 aa6.18□□□□□ -1.42
MSL1YIR009W GYP5Q12344 894 aa6.18□□□□□ -1.42
MSL1YIR009W ABP1P15891 592 aaKnown RBP6.17□□□□□ -1.42
MSL1YIR009W YNL035CP53962 389 aaKnown RBP6.17□□□□□ -1.42
MSL1YIR009W SEC61P32915 480 aa6.14□□□□□ -1.43
MSL1YIR009W BMT6Q12291 365 aa6.14□□□□□ -1.43
MSL1YIR009W NCR1Q12200 1170 aa6.13□□□□□ -1.43
MSL1YIR009W HTA1P04911 132 aaKnown RBP6.12□□□□□ -1.43
MSL1YIR009W HTA2P04912 132 aa6.12□□□□□ -1.43
MSL1YIR009W DCW1P36091 449 aa6.12□□□□□ -1.43
MSL1YIR009W EDS1P38073 919 aa6.12□□□□□ -1.43
MSL1YIR009W DAN4P47179 1161 aa6.12□□□□□ -1.43
MSL1YIR009W MIF2P35201 549 aa6.11□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 16 ms