RNA–Protein interactions for RNA: YIL084C

SDS3, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene SDS3, Length 984 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SDS3YIL084C MTC1P47018 478 aaKnown RBP16.65■□□□□ 0.26
SDS3YIL084C FAP1P53971 965 aa15.87■□□□□ 0.13
SDS3YIL084C PRY3P47033 881 aa15□□□□□ -0.01
SDS3YIL084C DRS1P32892 752 aaKnown RBP14.78□□□□□ -0.04
SDS3YIL084C PRI1P10363 409 aa14.51□□□□□ -0.09
SDS3YIL084C AAD16Q02895 342 aa14.49□□□□□ -0.09
SDS3YIL084C YCK3P39962 524 aa14.26□□□□□ -0.13
SDS3YIL084C HAA1Q12753 694 aaKnown RBP13.94□□□□□ -0.18
SDS3YIL084C ISW2Q08773 1120 aa13.91□□□□□ -0.18
SDS3YIL084C RPG1P38249 964 aaKnown RBP13.89□□□□□ -0.19
SDS3YIL084C TSR3Q12094 313 aaKnown RBP13.72□□□□□ -0.21
SDS3YIL084C DIP2Q12220 943 aaPredicted RBP13.26□□□□□ -0.29
SDS3YIL084C MRPL32P25348 183 aa13.08□□□□□ -0.32
SDS3YIL084C RSE1Q04693 1361 aaKnown RBP12.99□□□□□ -0.33
SDS3YIL084C YGL015CP33199 130 aa12.75□□□□□ -0.37
SDS3YIL084C RPL17AP05740 184 aaKnown RBP12.68□□□□□ -0.38
SDS3YIL084C RPL17BP46990 184 aaKnown RBP12.68□□□□□ -0.38
SDS3YIL084C REB1P21538 810 aa12.64□□□□□ -0.39
SDS3YIL084C AVT3P36062 692 aa12.58□□□□□ -0.4
SDS3YIL084C CDC27P38042 758 aa12.41□□□□□ -0.42
SDS3YIL084C YKR023WP36119 530 aaKnown RBP12.18□□□□□ -0.46
SDS3YIL084C SPT21P35209 758 aa12.1□□□□□ -0.47
SDS3YIL084C BUD31P25337 157 aaPredicted RBP12.07□□□□□ -0.48
SDS3YIL084C MAP2P38174 421 aaKnown RBP12.07□□□□□ -0.48
SDS3YIL084C UBP10P53874 792 aaPredicted RBP12□□□□□ -0.49
SDS3YIL084C DCD1P06773 312 aa11.94□□□□□ -0.5
SDS3YIL084C HOP09932 586 aa11.93□□□□□ -0.5
SDS3YIL084C BFR2Q06631 534 aaKnown RBP11.89□□□□□ -0.51
SDS3YIL084C TFC8Q12308 588 aa11.88□□□□□ -0.51
SDS3YIL084C SCY1P53009 804 aa11.68□□□□□ -0.54
SDS3YIL084C SLX5P32828 619 aaKnown RBP11.51□□□□□ -0.57
SDS3YIL084C TGL3P40308 642 aa11.51□□□□□ -0.57
SDS3YIL084C TIF4632P39936 914 aaKnown RBP11.5□□□□□ -0.57
SDS3YIL084C BCH2P36122 765 aa11.49□□□□□ -0.57
SDS3YIL084C RIM101P33400 625 aa11.47□□□□□ -0.57
SDS3YIL084C SIS1P25294 352 aaKnown RBP11.39□□□□□ -0.59
SDS3YIL084C UBP9P39967 754 aa11.33□□□□□ -0.6
SDS3YIL084C OXP1P28273 1286 aa11.13□□□□□ -0.63
SDS3YIL084C EPS1P40557 701 aa11.12□□□□□ -0.63
SDS3YIL084C BDF1P35817 686 aa11.1□□□□□ -0.63
SDS3YIL084C MST1P07236 462 aa10.95□□□□□ -0.66
SDS3YIL084C YBL029C-AQ3E756 94 aa10.95□□□□□ -0.66
SDS3YIL084C PTP3P40048 928 aa10.91□□□□□ -0.66
SDS3YIL084C YOR238WQ08634 303 aa10.85□□□□□ -0.67
SDS3YIL084C YIL055CP40523 627 aaKnown RBP10.84□□□□□ -0.67
SDS3YIL084C VNX1P42839 908 aa10.77□□□□□ -0.69
SDS3YIL084C NSR1P27476 414 aaKnown RBP RIP-Chip data10.73□□□□□ -0.69not detected
SDS3YIL084C RSM7P47150 247 aa10.73□□□□□ -0.69
SDS3YIL084C AI2P03876 854 aa10.71□□□□□ -0.69
SDS3YIL084C TFA1P36100 482 aa10.69□□□□□ -0.7
SDS3YIL084C BBC1P47068 1157 aa10.69□□□□□ -0.7
SDS3YIL084C YAP5P40574 245 aa10.67□□□□□ -0.7
SDS3YIL084C WSC3Q12215 556 aa10.67□□□□□ -0.7
SDS3YIL084C YAH1Q12184 172 aaKnown RBP10.66□□□□□ -0.7
SDS3YIL084C SPP1Q03012 353 aa10.65□□□□□ -0.7
SDS3YIL084C AIR2Q12476 344 aaKnown RBP10.53□□□□□ -0.72
SDS3YIL084C TIF11P38912 153 aaKnown RBP10.48□□□□□ -0.73
SDS3YIL084C YLR271WQ06152 274 aa10.47□□□□□ -0.73
SDS3YIL084C FKH1P40466 484 aa10.46□□□□□ -0.73
SDS3YIL084C PIB1Q06651 286 aa10.44□□□□□ -0.74
SDS3YIL084C GTT3P39996 337 aa10.43□□□□□ -0.74
SDS3YIL084C YJL171CP46992 396 aa10.38□□□□□ -0.75
SDS3YIL084C PSD2P53037 1138 aaKnown RBP10.38□□□□□ -0.75
SDS3YIL084C LDB19Q12502 818 aa10.35□□□□□ -0.75
SDS3YIL084C ULI1P43604 169 aa10.33□□□□□ -0.76
SDS3YIL084C IOC2Q12072 812 aa10.33□□□□□ -0.76
SDS3YIL084C MRM1P25270 412 aa10.29□□□□□ -0.76
SDS3YIL084C BMT6Q12291 365 aa10.21□□□□□ -0.77
SDS3YIL084C SET4P42948 560 aa10.13□□□□□ -0.79
SDS3YIL084C YOL036WQ08206 761 aa10.12□□□□□ -0.79
SDS3YIL084C MSB4Q12317 492 aa10.12□□□□□ -0.79
SDS3YIL084C TRP5P00931 707 aaKnown RBP10.1□□□□□ -0.79
SDS3YIL084C RTG1P32607 177 aa10.1□□□□□ -0.79
SDS3YIL084C VPS29P38759 282 aa10.1□□□□□ -0.79
SDS3YIL084C YFR006WP43590 535 aa10.09□□□□□ -0.79
SDS3YIL084C DBP1P24784 617 aaKnown RBP10.07□□□□□ -0.8
SDS3YIL084C EAP1P36041 632 aaKnown RBP10.07□□□□□ -0.8
SDS3YIL084C CST9Q06032 482 aa10.07□□□□□ -0.8
SDS3YIL084C SSP1P38871 571 aa10.05□□□□□ -0.8
SDS3YIL084C YMR1P47147 688 aaKnown RBP RIP-Chip data10.05□□□□□ -0.8not detected
SDS3YIL084C STS1P38637 319 aa10.03□□□□□ -0.8
SDS3YIL084C NCR1Q12200 1170 aa10.03□□□□□ -0.8
SDS3YIL084C ARP8Q12386 881 aaKnown RBP RIP-Chip data10.01□□□□□ -0.81not detected
SDS3YIL084C VMA1P17255 1071 aaKnown RBP10□□□□□ -0.81
SDS3YIL084C YNL035CP53962 389 aaKnown RBP9.97□□□□□ -0.81
SDS3YIL084C RTG3P38165 486 aa9.96□□□□□ -0.82
SDS3YIL084C RCR1P38212 213 aa9.94□□□□□ -0.82
SDS3YIL084C SAM3Q08986 587 aa9.94□□□□□ -0.82
SDS3YIL084C SEC61P32915 480 aa9.93□□□□□ -0.82
SDS3YIL084C MGA2P40578 1113 aa9.89□□□□□ -0.83
SDS3YIL084C DAN4P47179 1161 aa9.86□□□□□ -0.83
SDS3YIL084C SAP30P38429 201 aa9.82□□□□□ -0.84
SDS3YIL084C TFG1P41895 735 aaPredicted RBP9.77□□□□□ -0.85
SDS3YIL084C GYP5Q12344 894 aa9.77□□□□□ -0.85
SDS3YIL084C DCW1P36091 449 aa9.74□□□□□ -0.85
SDS3YIL084C JIP4Q03361 876 aa9.74□□□□□ -0.85
SDS3YIL084C YDL129WQ07555 291 aa9.71□□□□□ -0.86
SDS3YIL084C HTA1P04911 132 aaKnown RBP9.68□□□□□ -0.86
SDS3YIL084C HTA2P04912 132 aa9.68□□□□□ -0.86
SDS3YIL084C BCK2P33306 851 aa9.68□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms