RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W MTC1P47018 478 aaKnown RBP14.1□□□□□ -0.15
RPF1YHR088W DRS1P32892 752 aaKnown RBP13.15□□□□□ -0.3
RPF1YHR088W FAP1P53971 965 aa12.62□□□□□ -0.39
RPF1YHR088W PRI1P10363 409 aa11.87□□□□□ -0.51
RPF1YHR088W PRY3P47033 881 aa11.83□□□□□ -0.52
RPF1YHR088W AAD16Q02895 342 aa11.82□□□□□ -0.52
RPF1YHR088W ISW2Q08773 1120 aa11.74□□□□□ -0.53
RPF1YHR088W DIP2Q12220 943 aaPredicted RBP11.54□□□□□ -0.56
RPF1YHR088W RPG1P38249 964 aaKnown RBP11.52□□□□□ -0.57
RPF1YHR088W HAA1Q12753 694 aaKnown RBP11.23□□□□□ -0.61
RPF1YHR088W RSE1Q04693 1361 aaKnown RBP11.19□□□□□ -0.62
RPF1YHR088W TSR3Q12094 313 aaKnown RBP11.15□□□□□ -0.62
RPF1YHR088W AVT3P36062 692 aa11.13□□□□□ -0.63
RPF1YHR088W YCK3P39962 524 aa11.1□□□□□ -0.63
RPF1YHR088W BFR2Q06631 534 aaKnown RBP10.95□□□□□ -0.66
RPF1YHR088W MRPL32P25348 183 aa10.82□□□□□ -0.68
RPF1YHR088W RPL17AP05740 184 aaKnown RBP10.77□□□□□ -0.69
RPF1YHR088W REB1P21538 810 aa10.77□□□□□ -0.69
RPF1YHR088W RPL17BP46990 184 aaKnown RBP10.77□□□□□ -0.69
RPF1YHR088W YGL015CP33199 130 aa10.42□□□□□ -0.74
RPF1YHR088W SPT21P35209 758 aa10.32□□□□□ -0.76
RPF1YHR088W YKR023WP36119 530 aaKnown RBP10.18□□□□□ -0.78
RPF1YHR088W CDC27P38042 758 aa10.17□□□□□ -0.78
RPF1YHR088W UBP10P53874 792 aaPredicted RBP10.05□□□□□ -0.8
RPF1YHR088W RIM101P33400 625 aa10□□□□□ -0.81
RPF1YHR088W TFC8Q12308 588 aa10□□□□□ -0.81
RPF1YHR088W HOP09932 586 aa9.93□□□□□ -0.82
RPF1YHR088W MAP2P38174 421 aaKnown RBP9.88□□□□□ -0.83
RPF1YHR088W DCD1P06773 312 aa9.83□□□□□ -0.84
RPF1YHR088W TFA1P36100 482 aa9.73□□□□□ -0.85
RPF1YHR088W SCY1P53009 804 aa9.7□□□□□ -0.86
RPF1YHR088W BCH2P36122 765 aa9.66□□□□□ -0.86
RPF1YHR088W TIF4632P39936 914 aaKnown RBP9.65□□□□□ -0.86
RPF1YHR088W SLX5P32828 619 aaKnown RBP9.64□□□□□ -0.87
RPF1YHR088W OXP1P28273 1286 aa9.6□□□□□ -0.87
RPF1YHR088W TGL3P40308 642 aa9.59□□□□□ -0.87
RPF1YHR088W YIL055CP40523 627 aaKnown RBP9.55□□□□□ -0.88
RPF1YHR088W BUD31P25337 157 aaPredicted RBP9.5□□□□□ -0.89
RPF1YHR088W PTP3P40048 928 aa9.49□□□□□ -0.89
RPF1YHR088W EPS1P40557 701 aa9.43□□□□□ -0.9
RPF1YHR088W BDF1P35817 686 aa9.39□□□□□ -0.91
RPF1YHR088W RSM7P47150 247 aa9.39□□□□□ -0.91
RPF1YHR088W BBC1P47068 1157 aa9.36□□□□□ -0.91
RPF1YHR088W UBP9P39967 754 aa9.33□□□□□ -0.92
RPF1YHR088W YAH1Q12184 172 aaKnown RBP9.29□□□□□ -0.92
RPF1YHR088W AI2P03876 854 aa9.28□□□□□ -0.92
RPF1YHR088W NSR1P27476 414 aaKnown RBP RIP-Chip data9.22□□□□□ -0.93not detected
RPF1YHR088W MST1P07236 462 aa9.19□□□□□ -0.94
RPF1YHR088W YLR271WQ06152 274 aa9.18□□□□□ -0.94
RPF1YHR088W YOR238WQ08634 303 aa9.16□□□□□ -0.94
RPF1YHR088W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.14□□□□□ -0.95not detected
RPF1YHR088W SSP1P38871 571 aa9.13□□□□□ -0.95
RPF1YHR088W YAP5P40574 245 aa9.1□□□□□ -0.95
RPF1YHR088W PSD2P53037 1138 aaKnown RBP9.08□□□□□ -0.96
RPF1YHR088W SIS1P25294 352 aaKnown RBP9.04□□□□□ -0.96
RPF1YHR088W MGA2P40578 1113 aa8.94□□□□□ -0.98
RPF1YHR088W YBL029C-AQ3E756 94 aa8.93□□□□□ -0.98
RPF1YHR088W MRM1P25270 412 aa8.92□□□□□ -0.98
RPF1YHR088W VNX1P42839 908 aa8.9□□□□□ -0.98
RPF1YHR088W GTT3P39996 337 aa8.88□□□□□ -0.99
RPF1YHR088W SPP1Q03012 353 aa8.83□□□□□ -1
RPF1YHR088W CST9Q06032 482 aa8.82□□□□□ -1
RPF1YHR088W RTG3P38165 486 aa8.81□□□□□ -1
RPF1YHR088W WSC3Q12215 556 aa8.8□□□□□ -1
RPF1YHR088W YMR1P47147 688 aaKnown RBP RIP-Chip data8.79□□□□□ -1not detected
RPF1YHR088W TIF11P38912 153 aaKnown RBP8.78□□□□□ -1
RPF1YHR088W VPS29P38759 282 aa8.74□□□□□ -1.01
RPF1YHR088W MSB4Q12317 492 aa8.74□□□□□ -1.01
RPF1YHR088W PIB1Q06651 286 aa8.71□□□□□ -1.02
RPF1YHR088W DBP1P24784 617 aaKnown RBP8.7□□□□□ -1.02
RPF1YHR088W EAP1P36041 632 aaKnown RBP8.7□□□□□ -1.02
RPF1YHR088W ULI1P43604 169 aa8.65□□□□□ -1.02
RPF1YHR088W VMA1P17255 1071 aaKnown RBP8.63□□□□□ -1.03
RPF1YHR088W STS1P38637 319 aa8.63□□□□□ -1.03
RPF1YHR088W FKH1P40466 484 aa8.63□□□□□ -1.03
RPF1YHR088W SAM3Q08986 587 aa8.62□□□□□ -1.03
RPF1YHR088W IOC2Q12072 812 aa8.62□□□□□ -1.03
RPF1YHR088W YOL036WQ08206 761 aa8.61□□□□□ -1.03
RPF1YHR088W YFR006WP43590 535 aa8.6□□□□□ -1.03
RPF1YHR088W AIR2Q12476 344 aaKnown RBP8.6□□□□□ -1.03
RPF1YHR088W LDB19Q12502 818 aa8.59□□□□□ -1.03
RPF1YHR088W RCR1P38212 213 aa8.58□□□□□ -1.04
RPF1YHR088W YJL171CP46992 396 aa8.58□□□□□ -1.04
RPF1YHR088W ABP1P15891 592 aaKnown RBP8.57□□□□□ -1.04
RPF1YHR088W SET4P42948 560 aa8.56□□□□□ -1.04
RPF1YHR088W TRP5P00931 707 aaKnown RBP8.52□□□□□ -1.05
RPF1YHR088W YNL035CP53962 389 aaKnown RBP8.49□□□□□ -1.05
RPF1YHR088W RTG1P32607 177 aa8.48□□□□□ -1.05
RPF1YHR088W SEC61P32915 480 aa8.48□□□□□ -1.05
RPF1YHR088W BMT6Q12291 365 aa8.47□□□□□ -1.05
RPF1YHR088W GYP5Q12344 894 aa8.47□□□□□ -1.05
RPF1YHR088W MAK11P20484 414 aaKnown RBP8.46□□□□□ -1.06
RPF1YHR088W JIP4Q03361 876 aa8.45□□□□□ -1.06
RPF1YHR088W NCR1Q12200 1170 aa8.45□□□□□ -1.06
RPF1YHR088W HTA1P04911 132 aaKnown RBP8.42□□□□□ -1.06
RPF1YHR088W HTA2P04912 132 aa8.42□□□□□ -1.06
RPF1YHR088W RAM2P29703 316 aa8.41□□□□□ -1.06
RPF1YHR088W TFG1P41895 735 aaPredicted RBP8.41□□□□□ -1.06
RPF1YHR088W PTC4P38089 393 aa8.37□□□□□ -1.07
RPF1YHR088W GRE2Q12068 342 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms