RNA–Protein interactions for RNA: YHR004C

NEM1, Transcript of Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme, yeastyeast

Gene NEM1, Length 1,341 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NEM1YHR004C MTC1P47018 478 aaKnown RBP20.8■□□□□ 0.92
NEM1YHR004C DRS1P32892 752 aaKnown RBP19.19■□□□□ 0.66
NEM1YHR004C FAP1P53971 965 aa19.08■□□□□ 0.65
NEM1YHR004C PRY3P47033 881 aa17.9■□□□□ 0.46
NEM1YHR004C PRI1P10363 409 aa17.69■□□□□ 0.42
NEM1YHR004C AAD16Q02895 342 aa17.65■□□□□ 0.42
NEM1YHR004C ISW2Q08773 1120 aa17.4■□□□□ 0.38
NEM1YHR004C RPG1P38249 964 aaKnown RBP17.14■□□□□ 0.33
NEM1YHR004C DIP2Q12220 943 aaPredicted RBP16.93■□□□□ 0.3
NEM1YHR004C HAA1Q12753 694 aaKnown RBP16.85■□□□□ 0.29
NEM1YHR004C YCK3P39962 524 aa16.7■□□□□ 0.26
NEM1YHR004C TSR3Q12094 313 aaKnown RBP16.68■□□□□ 0.26
NEM1YHR004C RSE1Q04693 1361 aaKnown RBP16.46■□□□□ 0.23
NEM1YHR004C AVT3P36062 692 aa16.18■□□□□ 0.18
NEM1YHR004C MRPL32P25348 183 aa16.14■□□□□ 0.17
NEM1YHR004C REB1P21538 810 aa15.94■□□□□ 0.14
NEM1YHR004C RPL17AP05740 184 aaKnown RBP15.91■□□□□ 0.14
NEM1YHR004C RPL17BP46990 184 aaKnown RBP15.91■□□□□ 0.14
NEM1YHR004C BFR2Q06631 534 aaKnown RBP15.83■□□□□ 0.12
NEM1YHR004C YGL015CP33199 130 aa15.57■□□□□ 0.08
NEM1YHR004C SPT21P35209 758 aa15.14■□□□□ 0.01
NEM1YHR004C CDC27P38042 758 aa15.13■□□□□ 0.01
NEM1YHR004C YKR023WP36119 530 aaKnown RBP15.04■□□□□ -0
NEM1YHR004C UBP10P53874 792 aaPredicted RBP14.87□□□□□ -0.03
NEM1YHR004C TFC8Q12308 588 aa14.78□□□□□ -0.04
NEM1YHR004C HOP09932 586 aa14.74□□□□□ -0.05
NEM1YHR004C MAP2P38174 421 aaKnown RBP14.72□□□□□ -0.05
NEM1YHR004C DCD1P06773 312 aa14.65□□□□□ -0.06
NEM1YHR004C RIM101P33400 625 aa14.6□□□□□ -0.07
NEM1YHR004C SCY1P53009 804 aa14.41□□□□□ -0.1
NEM1YHR004C TIF4632P39936 914 aaKnown RBP14.35□□□□□ -0.11
NEM1YHR004C BUD31P25337 157 aaPredicted RBP14.31□□□□□ -0.12
NEM1YHR004C SLX5P32828 619 aaKnown RBP14.3□□□□□ -0.12
NEM1YHR004C BCH2P36122 765 aa14.27□□□□□ -0.12
NEM1YHR004C TGL3P40308 642 aa14.22□□□□□ -0.13
NEM1YHR004C OXP1P28273 1286 aa14.05□□□□□ -0.16
NEM1YHR004C YIL055CP40523 627 aaKnown RBP14.01□□□□□ -0.17
NEM1YHR004C PTP3P40048 928 aa13.97□□□□□ -0.17
NEM1YHR004C UBP9P39967 754 aa13.94□□□□□ -0.18
NEM1YHR004C EPS1P40557 701 aa13.9□□□□□ -0.18
NEM1YHR004C TFA1P36100 482 aa13.9□□□□□ -0.19
NEM1YHR004C BDF1P35817 686 aa13.86□□□□□ -0.19
NEM1YHR004C BBC1P47068 1157 aa13.74□□□□□ -0.21
NEM1YHR004C RSM7P47150 247 aa13.74□□□□□ -0.21
NEM1YHR004C SIS1P25294 352 aaKnown RBP13.66□□□□□ -0.22
NEM1YHR004C YAH1Q12184 172 aaKnown RBP13.65□□□□□ -0.22
NEM1YHR004C AI2P03876 854 aa13.62□□□□□ -0.23
NEM1YHR004C YOR238WQ08634 303 aa13.56□□□□□ -0.24
NEM1YHR004C MST1P07236 462 aa13.54□□□□□ -0.24
NEM1YHR004C NSR1P27476 414 aaKnown RBP RIP-Chip data13.5□□□□□ -0.25not detected
NEM1YHR004C YAP5P40574 245 aa13.42□□□□□ -0.26
NEM1YHR004C YLR271WQ06152 274 aa13.39□□□□□ -0.27
NEM1YHR004C YBL029C-AQ3E756 94 aa13.34□□□□□ -0.27
NEM1YHR004C ARP8Q12386 881 aaKnown RBP RIP-Chip data13.27□□□□□ -0.29not detected
NEM1YHR004C PSD2P53037 1138 aaKnown RBP13.24□□□□□ -0.29
NEM1YHR004C SSP1P38871 571 aa13.22□□□□□ -0.29
NEM1YHR004C VNX1P42839 908 aa13.22□□□□□ -0.29
NEM1YHR004C GTT3P39996 337 aa13.16□□□□□ -0.3
NEM1YHR004C SPP1Q03012 353 aa13.14□□□□□ -0.31
NEM1YHR004C WSC3Q12215 556 aa13.13□□□□□ -0.31
NEM1YHR004C MRM1P25270 412 aa13.1□□□□□ -0.31
NEM1YHR004C TIF11P38912 153 aaKnown RBP13□□□□□ -0.33
NEM1YHR004C MGA2P40578 1113 aa12.96□□□□□ -0.33
NEM1YHR004C PIB1Q06651 286 aa12.94□□□□□ -0.34
NEM1YHR004C CST9Q06032 482 aa12.88□□□□□ -0.35
NEM1YHR004C RTG3P38165 486 aa12.87□□□□□ -0.35
NEM1YHR004C YMR1P47147 688 aaKnown RBP RIP-Chip data12.87□□□□□ -0.35not detected
NEM1YHR004C ULI1P43604 169 aa12.85□□□□□ -0.35
NEM1YHR004C YJL171CP46992 396 aa12.85□□□□□ -0.35
NEM1YHR004C MSB4Q12317 492 aa12.84□□□□□ -0.35
NEM1YHR004C FKH1P40466 484 aa12.8□□□□□ -0.36
NEM1YHR004C AIR2Q12476 344 aaKnown RBP12.8□□□□□ -0.36
NEM1YHR004C EAP1P36041 632 aaKnown RBP12.79□□□□□ -0.36
NEM1YHR004C DBP1P24784 617 aaKnown RBP12.78□□□□□ -0.36
NEM1YHR004C VPS29P38759 282 aa12.78□□□□□ -0.36
NEM1YHR004C LDB19Q12502 818 aa12.78□□□□□ -0.36
NEM1YHR004C IOC2Q12072 812 aa12.75□□□□□ -0.37
NEM1YHR004C YFR006WP43590 535 aa12.68□□□□□ -0.38
NEM1YHR004C YOL036WQ08206 761 aa12.68□□□□□ -0.38
NEM1YHR004C SET4P42948 560 aa12.67□□□□□ -0.38
NEM1YHR004C VMA1P17255 1071 aaKnown RBP12.64□□□□□ -0.39
NEM1YHR004C STS1P38637 319 aa12.64□□□□□ -0.39
NEM1YHR004C BMT6Q12291 365 aa12.62□□□□□ -0.39
NEM1YHR004C SAM3Q08986 587 aa12.6□□□□□ -0.39
NEM1YHR004C TRP5P00931 707 aaKnown RBP12.59□□□□□ -0.39
NEM1YHR004C RCR1P38212 213 aa12.57□□□□□ -0.4
NEM1YHR004C RTG1P32607 177 aa12.56□□□□□ -0.4
NEM1YHR004C YNL035CP53962 389 aaKnown RBP12.52□□□□□ -0.41
NEM1YHR004C NCR1Q12200 1170 aa12.52□□□□□ -0.41
NEM1YHR004C ABP1P15891 592 aaKnown RBP12.49□□□□□ -0.41
NEM1YHR004C SEC61P32915 480 aa12.49□□□□□ -0.41
NEM1YHR004C TFG1P41895 735 aaPredicted RBP12.45□□□□□ -0.42
NEM1YHR004C GYP5Q12344 894 aa12.44□□□□□ -0.42
NEM1YHR004C JIP4Q03361 876 aa12.39□□□□□ -0.43
NEM1YHR004C HTA1P04911 132 aaKnown RBP12.37□□□□□ -0.43
NEM1YHR004C HTA2P04912 132 aa12.37□□□□□ -0.43
NEM1YHR004C DCW1P36091 449 aa12.31□□□□□ -0.44
NEM1YHR004C DAN4P47179 1161 aa12.29□□□□□ -0.44
NEM1YHR004C PTC4P38089 393 aa12.28□□□□□ -0.44
NEM1YHR004C MAK11P20484 414 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 5,963 RNA–protein pairs in 99.6 ms