RNA–Protein interactions for RNA: YGR074W

SMD1, Transcript of Core Sm protein Sm D1, yeastyeast

Gene SMD1, Length 441 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMD1YGR074W FAP1P53971 965 aa11.03□□□□□ -0.64
SMD1YGR074W PRY3P47033 881 aa10.42□□□□□ -0.74
SMD1YGR074W MTC1P47018 478 aaKnown RBP10.09□□□□□ -0.79
SMD1YGR074W YCK3P39962 524 aa9.72□□□□□ -0.85
SMD1YGR074W HAA1Q12753 694 aaKnown RBP9.69□□□□□ -0.86
SMD1YGR074W AAD16Q02895 342 aa9.63□□□□□ -0.87
SMD1YGR074W PRI1P10363 409 aa9.46□□□□□ -0.9
SMD1YGR074W TSR3Q12094 313 aaKnown RBP8.84□□□□□ -0.99
SMD1YGR074W ISW2Q08773 1120 aa8.77□□□□□ -1.01
SMD1YGR074W RPG1P38249 964 aaKnown RBP8.71□□□□□ -1.02
SMD1YGR074W BUD31P25337 157 aaPredicted RBP8.68□□□□□ -1.02
SMD1YGR074W YGL015CP33199 130 aa8.67□□□□□ -1.02
SMD1YGR074W MRPL32P25348 183 aa8.54□□□□□ -1.04
SMD1YGR074W SIS1P25294 352 aaKnown RBP8.12□□□□□ -1.11
SMD1YGR074W DRS1P32892 752 aaKnown RBP8.02□□□□□ -1.13
SMD1YGR074W UBP9P39967 754 aa7.81□□□□□ -1.16
SMD1YGR074W UBP10P53874 792 aaPredicted RBP7.8□□□□□ -1.16
SMD1YGR074W CDC27P38042 758 aa7.76□□□□□ -1.17
SMD1YGR074W MAP2P38174 421 aaKnown RBP7.73□□□□□ -1.17
SMD1YGR074W RSE1Q04693 1361 aaKnown RBP7.7□□□□□ -1.18
SMD1YGR074W REB1P21538 810 aa7.64□□□□□ -1.19
SMD1YGR074W TIF4632P39936 914 aaKnown RBP7.52□□□□□ -1.21
SMD1YGR074W RPL17AP05740 184 aaKnown RBP7.51□□□□□ -1.21
SMD1YGR074W RPL17BP46990 184 aaKnown RBP7.51□□□□□ -1.21
SMD1YGR074W DIP2Q12220 943 aaPredicted RBP7.51□□□□□ -1.21
SMD1YGR074W TGL3P40308 642 aa7.5□□□□□ -1.21
SMD1YGR074W YKR023WP36119 530 aaKnown RBP7.33□□□□□ -1.24
SMD1YGR074W SLX5P32828 619 aaKnown RBP7.31□□□□□ -1.24
SMD1YGR074W SCY1P53009 804 aa7.28□□□□□ -1.24
SMD1YGR074W DCD1P06773 312 aa7.21□□□□□ -1.26
SMD1YGR074W HOP09932 586 aa7.2□□□□□ -1.26
SMD1YGR074W TFC8Q12308 588 aa7.19□□□□□ -1.26
SMD1YGR074W YBL029C-AQ3E756 94 aa7.13□□□□□ -1.27
SMD1YGR074W SPT21P35209 758 aa7.09□□□□□ -1.27
SMD1YGR074W YJL171CP46992 396 aa7.03□□□□□ -1.28
SMD1YGR074W VNX1P42839 908 aa6.98□□□□□ -1.29
SMD1YGR074W MST1P07236 462 aa6.97□□□□□ -1.29
SMD1YGR074W AIR2Q12476 344 aaKnown RBP6.96□□□□□ -1.3
SMD1YGR074W SPP1Q03012 353 aa6.93□□□□□ -1.3
SMD1YGR074W BCH2P36122 765 aa6.89□□□□□ -1.31
SMD1YGR074W FKH1P40466 484 aa6.87□□□□□ -1.31
SMD1YGR074W YOR238WQ08634 303 aa6.87□□□□□ -1.31
SMD1YGR074W AVT3P36062 692 aa6.85□□□□□ -1.31
SMD1YGR074W BMT6Q12291 365 aa6.77□□□□□ -1.33
SMD1YGR074W WSC3Q12215 556 aa6.76□□□□□ -1.33
SMD1YGR074W TIF11P38912 153 aaKnown RBP6.73□□□□□ -1.33
SMD1YGR074W NSR1P27476 414 aaKnown RBP RIP-Chip data6.7□□□□□ -1.34not detected
SMD1YGR074W RGA2Q06407 1009 aa6.65□□□□□ -1.34
SMD1YGR074W LDB19Q12502 818 aa6.64□□□□□ -1.35
SMD1YGR074W BDF1P35817 686 aa6.62□□□□□ -1.35
SMD1YGR074W EPS1P40557 701 aa6.62□□□□□ -1.35
SMD1YGR074W YAP5P40574 245 aa6.59□□□□□ -1.35
SMD1YGR074W RIM101P33400 625 aa6.53□□□□□ -1.36
SMD1YGR074W ULI1P43604 169 aa6.53□□□□□ -1.36
SMD1YGR074W IOC2Q12072 812 aa6.53□□□□□ -1.36
SMD1YGR074W GTT3P39996 337 aa6.51□□□□□ -1.37
SMD1YGR074W BFR2Q06631 534 aaKnown RBP6.49□□□□□ -1.37
SMD1YGR074W BCK2P33306 851 aa6.4□□□□□ -1.38
SMD1YGR074W NCR1Q12200 1170 aa6.37□□□□□ -1.39
SMD1YGR074W RTG1P32607 177 aa6.36□□□□□ -1.39
SMD1YGR074W EAP1P36041 632 aaKnown RBP6.32□□□□□ -1.4
SMD1YGR074W MSB4Q12317 492 aa6.32□□□□□ -1.4
SMD1YGR074W RGA1P39083 1007 aa6.3□□□□□ -1.4
SMD1YGR074W BBC1P47068 1157 aa6.3□□□□□ -1.4
SMD1YGR074W SEC61P32915 480 aa6.25□□□□□ -1.41
SMD1YGR074W PTP3P40048 928 aa6.25□□□□□ -1.41
SMD1YGR074W OXP1P28273 1286 aa6.22□□□□□ -1.41
SMD1YGR074W YNL035CP53962 389 aaKnown RBP6.22□□□□□ -1.41
SMD1YGR074W TRP5P00931 707 aaKnown RBP6.21□□□□□ -1.42
SMD1YGR074W CHL1P22516 861 aaPredicted RBP6.2□□□□□ -1.42
SMD1YGR074W YIL055CP40523 627 aaKnown RBP6.19□□□□□ -1.42
SMD1YGR074W TFG1P41895 735 aaPredicted RBP6.19□□□□□ -1.42
SMD1YGR074W PIB1Q06651 286 aa6.18□□□□□ -1.42
SMD1YGR074W AI2P03876 854 aa6.15□□□□□ -1.42
SMD1YGR074W SAP30P38429 201 aa6.15□□□□□ -1.42
SMD1YGR074W XDJ1P39102 459 aa6.14□□□□□ -1.43
SMD1YGR074W SET4P42948 560 aa6.13□□□□□ -1.43
SMD1YGR074W YOL036WQ08206 761 aa6.13□□□□□ -1.43
SMD1YGR074W PRE3P38624 215 aa6.11□□□□□ -1.43
SMD1YGR074W DPS1P04802 557 aaKnown RBP6.1□□□□□ -1.43
SMD1YGR074W RSM7P47150 247 aa6.09□□□□□ -1.43
SMD1YGR074W VRP1P37370 817 aa6.05□□□□□ -1.44
SMD1YGR074W YDL129WQ07555 291 aa6.04□□□□□ -1.44
SMD1YGR074W JIP4Q03361 876 aa5.99□□□□□ -1.45
SMD1YGR074W DAN4P47179 1161 aa5.98□□□□□ -1.45
SMD1YGR074W SRC1Q03707 834 aa5.95□□□□□ -1.46
SMD1YGR074W SAM3Q08986 587 aa5.91□□□□□ -1.46
SMD1YGR074W ABP1P15891 592 aaKnown RBP5.9□□□□□ -1.46
SMD1YGR074W VMA1P17255 1071 aaKnown RBP5.89□□□□□ -1.47
SMD1YGR074W YMR1P47147 688 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47not detected
SMD1YGR074W MRM1P25270 412 aa5.84□□□□□ -1.47
SMD1YGR074W YAH1Q12184 172 aaKnown RBP5.84□□□□□ -1.47
SMD1YGR074W DBP1P24784 617 aaKnown RBP5.83□□□□□ -1.48
SMD1YGR074W PSD2P53037 1138 aaKnown RBP5.82□□□□□ -1.48
SMD1YGR074W PTC4P38089 393 aa5.81□□□□□ -1.48
SMD1YGR074W ELP4Q02884 456 aaKnown RBP5.81□□□□□ -1.48
SMD1YGR074W HTA1P04911 132 aaKnown RBP5.8□□□□□ -1.48
SMD1YGR074W HTA2P04912 132 aa5.8□□□□□ -1.48
SMD1YGR074W YEL023CP39992 682 aa5.77□□□□□ -1.49
SMD1YGR074W YDR344CQ05510 147 aa5.77□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms