RNA–Protein interactions for RNA: YGR003W

CUL3, Transcript of Ubiquitin-protein ligase, yeastyeast

Gene CUL3, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUL3YGR003W FAP1P53971 965 aa9.89□□□□□ -0.83
CUL3YGR003W MTC1P47018 478 aaKnown RBP9.87□□□□□ -0.83
CUL3YGR003W PRY3P47033 881 aa9.31□□□□□ -0.92
CUL3YGR003W AAD16Q02895 342 aa8.87□□□□□ -0.99
CUL3YGR003W PRI1P10363 409 aa8.8□□□□□ -1
CUL3YGR003W YCK3P39962 524 aa8.7□□□□□ -1.02
CUL3YGR003W HAA1Q12753 694 aaKnown RBP8.69□□□□□ -1.02
CUL3YGR003W ISW2Q08773 1120 aa8.41□□□□□ -1.06
CUL3YGR003W DRS1P32892 752 aaKnown RBP8.39□□□□□ -1.07
CUL3YGR003W RPG1P38249 964 aaKnown RBP8.32□□□□□ -1.08
CUL3YGR003W TSR3Q12094 313 aaKnown RBP8.27□□□□□ -1.08
CUL3YGR003W MRPL32P25348 183 aa7.98□□□□□ -1.13
CUL3YGR003W YGL015CP33199 130 aa7.9□□□□□ -1.15
CUL3YGR003W DIP2Q12220 943 aaPredicted RBP7.67□□□□□ -1.18
CUL3YGR003W RSE1Q04693 1361 aaKnown RBP7.65□□□□□ -1.18
CUL3YGR003W BUD31P25337 157 aaPredicted RBP7.59□□□□□ -1.19
CUL3YGR003W REB1P21538 810 aa7.52□□□□□ -1.2
CUL3YGR003W RPL17AP05740 184 aaKnown RBP7.45□□□□□ -1.22
CUL3YGR003W RPL17BP46990 184 aaKnown RBP7.45□□□□□ -1.22
CUL3YGR003W CDC27P38042 758 aa7.39□□□□□ -1.23
CUL3YGR003W UBP10P53874 792 aaPredicted RBP7.32□□□□□ -1.24
CUL3YGR003W MAP2P38174 421 aaKnown RBP7.27□□□□□ -1.25
CUL3YGR003W SIS1P25294 352 aaKnown RBP7.17□□□□□ -1.26
CUL3YGR003W YKR023WP36119 530 aaKnown RBP7.17□□□□□ -1.26
CUL3YGR003W AVT3P36062 692 aa7.13□□□□□ -1.27
CUL3YGR003W UBP9P39967 754 aa7.09□□□□□ -1.27
CUL3YGR003W TIF4632P39936 914 aaKnown RBP7.05□□□□□ -1.28
CUL3YGR003W HOP09932 586 aa7.04□□□□□ -1.28
CUL3YGR003W SPT21P35209 758 aa7.04□□□□□ -1.28
CUL3YGR003W DCD1P06773 312 aa7.03□□□□□ -1.28
CUL3YGR003W TFC8Q12308 588 aa7.03□□□□□ -1.28
CUL3YGR003W TGL3P40308 642 aa7.01□□□□□ -1.29
CUL3YGR003W SCY1P53009 804 aa6.99□□□□□ -1.29
CUL3YGR003W SLX5P32828 619 aaKnown RBP6.96□□□□□ -1.3
CUL3YGR003W BCH2P36122 765 aa6.77□□□□□ -1.33
CUL3YGR003W YBL029C-AQ3E756 94 aa6.64□□□□□ -1.35
CUL3YGR003W RIM101P33400 625 aa6.62□□□□□ -1.35
CUL3YGR003W MST1P07236 462 aa6.61□□□□□ -1.35
CUL3YGR003W BFR2Q06631 534 aaKnown RBP6.57□□□□□ -1.36
CUL3YGR003W YOR238WQ08634 303 aa6.56□□□□□ -1.36
CUL3YGR003W BDF1P35817 686 aa6.54□□□□□ -1.36
CUL3YGR003W EPS1P40557 701 aa6.54□□□□□ -1.36
CUL3YGR003W VNX1P42839 908 aa6.53□□□□□ -1.36
CUL3YGR003W SPP1Q03012 353 aa6.49□□□□□ -1.37
CUL3YGR003W YJL171CP46992 396 aa6.46□□□□□ -1.38
CUL3YGR003W NSR1P27476 414 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
CUL3YGR003W WSC3Q12215 556 aa6.42□□□□□ -1.38
CUL3YGR003W AIR2Q12476 344 aaKnown RBP6.41□□□□□ -1.38
CUL3YGR003W YAP5P40574 245 aa6.4□□□□□ -1.39
CUL3YGR003W FKH1P40466 484 aa6.37□□□□□ -1.39
CUL3YGR003W OXP1P28273 1286 aa6.36□□□□□ -1.39
CUL3YGR003W TIF11P38912 153 aaKnown RBP6.35□□□□□ -1.39
CUL3YGR003W PTP3P40048 928 aa6.35□□□□□ -1.39
CUL3YGR003W YIL055CP40523 627 aaKnown RBP6.33□□□□□ -1.4
CUL3YGR003W BBC1P47068 1157 aa6.31□□□□□ -1.4
CUL3YGR003W GTT3P39996 337 aa6.3□□□□□ -1.4
CUL3YGR003W BMT6Q12291 365 aa6.27□□□□□ -1.4
CUL3YGR003W LDB19Q12502 818 aa6.27□□□□□ -1.41
CUL3YGR003W ULI1P43604 169 aa6.23□□□□□ -1.41
CUL3YGR003W AI2P03876 854 aa6.22□□□□□ -1.41
CUL3YGR003W RSM7P47150 247 aa6.21□□□□□ -1.42
CUL3YGR003W IOC2Q12072 812 aa6.21□□□□□ -1.42
CUL3YGR003W PIB1Q06651 286 aa6.11□□□□□ -1.43
CUL3YGR003W EAP1P36041 632 aaKnown RBP6.1□□□□□ -1.43
CUL3YGR003W MSB4Q12317 492 aa6.1□□□□□ -1.43
CUL3YGR003W YAH1Q12184 172 aaKnown RBP6.09□□□□□ -1.43
CUL3YGR003W RTG1P32607 177 aa6.08□□□□□ -1.44
CUL3YGR003W NCR1Q12200 1170 aa6.07□□□□□ -1.44
CUL3YGR003W TRP5P00931 707 aaKnown RBP6.02□□□□□ -1.45
CUL3YGR003W SET4P42948 560 aa6.01□□□□□ -1.45
CUL3YGR003W SEC61P32915 480 aa6□□□□□ -1.45
CUL3YGR003W YNL035CP53962 389 aaKnown RBP6□□□□□ -1.45
CUL3YGR003W YOL036WQ08206 761 aa6□□□□□ -1.45
CUL3YGR003W TFG1P41895 735 aaPredicted RBP5.96□□□□□ -1.46
CUL3YGR003W MRM1P25270 412 aa5.95□□□□□ -1.46
CUL3YGR003W BCK2P33306 851 aa5.95□□□□□ -1.46
CUL3YGR003W PSD2P53037 1138 aaKnown RBP5.94□□□□□ -1.46
CUL3YGR003W YLR271WQ06152 274 aa5.93□□□□□ -1.46
CUL3YGR003W SAP30P38429 201 aa5.9□□□□□ -1.46
CUL3YGR003W CHL1P22516 861 aaPredicted RBP5.89□□□□□ -1.47
CUL3YGR003W YMR1P47147 688 aaKnown RBP RIP-Chip data5.89□□□□□ -1.47not detected
CUL3YGR003W DBP1P24784 617 aaKnown RBP5.87□□□□□ -1.47
CUL3YGR003W VMA1P17255 1071 aaKnown RBP5.86□□□□□ -1.47
CUL3YGR003W SAM3Q08986 587 aa5.84□□□□□ -1.47
CUL3YGR003W YFR006WP43590 535 aa5.84□□□□□ -1.47
CUL3YGR003W JIP4Q03361 876 aa5.84□□□□□ -1.47
CUL3YGR003W YDL129WQ07555 291 aa5.84□□□□□ -1.47
CUL3YGR003W PRE3P38624 215 aa5.83□□□□□ -1.48
CUL3YGR003W DAN4P47179 1161 aa5.83□□□□□ -1.48
CUL3YGR003W VPS29P38759 282 aa5.82□□□□□ -1.48
CUL3YGR003W STS1P38637 319 aa5.78□□□□□ -1.48
CUL3YGR003W ABP1P15891 592 aaKnown RBP5.78□□□□□ -1.48
CUL3YGR003W RTG3P38165 486 aa5.78□□□□□ -1.48
CUL3YGR003W XDJ1P39102 459 aa5.76□□□□□ -1.49
CUL3YGR003W HTA1P04911 132 aaKnown RBP5.74□□□□□ -1.49
CUL3YGR003W HTA2P04912 132 aa5.74□□□□□ -1.49
CUL3YGR003W VRP1P37370 817 aa5.74□□□□□ -1.49
CUL3YGR003W GYP5Q12344 894 aa5.74□□□□□ -1.49
CUL3YGR003W PTC4P38089 393 aa5.74□□□□□ -1.49
CUL3YGR003W ARP8Q12386 881 aaKnown RBP RIP-Chip data5.73□□□□□ -1.49not detected
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms