RNA–Protein interactions for RNA: YGL248W

PDE1, Transcript of Low-affinity cyclic AMP phosphodiesterase, yeastyeast

Gene PDE1, Length 1,110 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDE1YGL248W MTC1P47018 478 aaKnown RBP14.8□□□□□ -0.04
PDE1YGL248W DRS1P32892 752 aaKnown RBP13.62□□□□□ -0.23
PDE1YGL248W FAP1P53971 965 aa13.61□□□□□ -0.23
PDE1YGL248W PRY3P47033 881 aa12.78□□□□□ -0.36
PDE1YGL248W PRI1P10363 409 aa12.6□□□□□ -0.39
PDE1YGL248W AAD16Q02895 342 aa12.56□□□□□ -0.4
PDE1YGL248W ISW2Q08773 1120 aa12.34□□□□□ -0.43
PDE1YGL248W RPG1P38249 964 aaKnown RBP12.2□□□□□ -0.46
PDE1YGL248W DIP2Q12220 943 aaPredicted RBP12.01□□□□□ -0.49
PDE1YGL248W YCK3P39962 524 aa12□□□□□ -0.49
PDE1YGL248W HAA1Q12753 694 aaKnown RBP11.97□□□□□ -0.49
PDE1YGL248W TSR3Q12094 313 aaKnown RBP11.9□□□□□ -0.5
PDE1YGL248W RSE1Q04693 1361 aaKnown RBP11.68□□□□□ -0.54
PDE1YGL248W AVT3P36062 692 aa11.5□□□□□ -0.57
PDE1YGL248W MRPL32P25348 183 aa11.45□□□□□ -0.58
PDE1YGL248W RPL17AP05740 184 aaKnown RBP11.32□□□□□ -0.6
PDE1YGL248W REB1P21538 810 aa11.32□□□□□ -0.6
PDE1YGL248W RPL17BP46990 184 aaKnown RBP11.32□□□□□ -0.6
PDE1YGL248W BFR2Q06631 534 aaKnown RBP11.22□□□□□ -0.61
PDE1YGL248W YGL015CP33199 130 aa11.03□□□□□ -0.64
PDE1YGL248W CDC27P38042 758 aa10.81□□□□□ -0.68
PDE1YGL248W SPT21P35209 758 aa10.8□□□□□ -0.68
PDE1YGL248W YKR023WP36119 530 aaKnown RBP10.73□□□□□ -0.69
PDE1YGL248W UBP10P53874 792 aaPredicted RBP10.56□□□□□ -0.72
PDE1YGL248W HOP09932 586 aa10.52□□□□□ -0.73
PDE1YGL248W MAP2P38174 421 aaKnown RBP10.52□□□□□ -0.73
PDE1YGL248W TFC8Q12308 588 aa10.52□□□□□ -0.73
PDE1YGL248W DCD1P06773 312 aa10.48□□□□□ -0.73
PDE1YGL248W RIM101P33400 625 aa10.37□□□□□ -0.75
PDE1YGL248W SCY1P53009 804 aa10.28□□□□□ -0.76
PDE1YGL248W BUD31P25337 157 aaPredicted RBP10.2□□□□□ -0.78
PDE1YGL248W SLX5P32828 619 aaKnown RBP10.16□□□□□ -0.78
PDE1YGL248W BCH2P36122 765 aa10.16□□□□□ -0.78
PDE1YGL248W TIF4632P39936 914 aaKnown RBP10.14□□□□□ -0.79
PDE1YGL248W TGL3P40308 642 aa10.07□□□□□ -0.8
PDE1YGL248W OXP1P28273 1286 aa10.01□□□□□ -0.81
PDE1YGL248W PTP3P40048 928 aa9.92□□□□□ -0.82
PDE1YGL248W YIL055CP40523 627 aaKnown RBP9.91□□□□□ -0.82
PDE1YGL248W EPS1P40557 701 aa9.91□□□□□ -0.82
PDE1YGL248W BDF1P35817 686 aa9.86□□□□□ -0.83
PDE1YGL248W UBP9P39967 754 aa9.86□□□□□ -0.83
PDE1YGL248W TFA1P36100 482 aa9.74□□□□□ -0.85
PDE1YGL248W RSM7P47150 247 aa9.73□□□□□ -0.85
PDE1YGL248W RQC2Q12532 1038 aaKnown RBP9.73□□□□□ -0.85
PDE1YGL248W SIS1P25294 352 aaKnown RBP9.72□□□□□ -0.85
PDE1YGL248W BBC1P47068 1157 aa9.72□□□□□ -0.85
PDE1YGL248W YAH1Q12184 172 aaKnown RBP9.72□□□□□ -0.85
PDE1YGL248W AI2P03876 854 aa9.67□□□□□ -0.86
PDE1YGL248W MST1P07236 462 aa9.61□□□□□ -0.87
PDE1YGL248W YOR238WQ08634 303 aa9.61□□□□□ -0.87
PDE1YGL248W NSR1P27476 414 aaKnown RBP RIP-Chip data9.57□□□□□ -0.88not detected
PDE1YGL248W YAP5P40574 245 aa9.52□□□□□ -0.89
PDE1YGL248W YLR271WQ06152 274 aa9.52□□□□□ -0.89
PDE1YGL248W YBL029C-AQ3E756 94 aa9.52□□□□□ -0.89
PDE1YGL248W TAF7Q05021 590 aa9.44□□□□□ -0.9
PDE1YGL248W PSD2P53037 1138 aaKnown RBP9.42□□□□□ -0.9
PDE1YGL248W VNX1P42839 908 aa9.4□□□□□ -0.9
PDE1YGL248W SSP1P38871 571 aa9.36□□□□□ -0.91
PDE1YGL248W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.36□□□□□ -0.91not detected
PDE1YGL248W WSC3Q12215 556 aa9.35□□□□□ -0.91
PDE1YGL248W SPP1Q03012 353 aa9.34□□□□□ -0.91
PDE1YGL248W GTT3P39996 337 aa9.33□□□□□ -0.92
PDE1YGL248W MRM1P25270 412 aa9.31□□□□□ -0.92
PDE1YGL248W PIB1Q06651 286 aa9.25□□□□□ -0.93
PDE1YGL248W TIF11P38912 153 aaKnown RBP9.22□□□□□ -0.93
PDE1YGL248W CST9Q06032 482 aa9.18□□□□□ -0.94
PDE1YGL248W MGA2P40578 1113 aa9.16□□□□□ -0.94
PDE1YGL248W FKH1P40466 484 aa9.13□□□□□ -0.95
PDE1YGL248W YMR1P47147 688 aaKnown RBP RIP-Chip data9.12□□□□□ -0.95not detected
PDE1YGL248W ULI1P43604 169 aa9.11□□□□□ -0.95
PDE1YGL248W AIR2Q12476 344 aaKnown RBP9.11□□□□□ -0.95
PDE1YGL248W RTG3P38165 486 aa9.1□□□□□ -0.95
PDE1YGL248W VPS29P38759 282 aa9.09□□□□□ -0.95
PDE1YGL248W LDB19Q12502 818 aa9.09□□□□□ -0.95
PDE1YGL248W YJL171CP46992 396 aa9.08□□□□□ -0.96
PDE1YGL248W DBP1P24784 617 aaKnown RBP9.07□□□□□ -0.96
PDE1YGL248W MSB4Q12317 492 aa9.07□□□□□ -0.96
PDE1YGL248W IOC2Q12072 812 aa9.06□□□□□ -0.96
PDE1YGL248W YFR006WP43590 535 aa9.04□□□□□ -0.96
PDE1YGL248W EAP1P36041 632 aaKnown RBP9.03□□□□□ -0.96
PDE1YGL248W YOL036WQ08206 761 aa9.03□□□□□ -0.96
PDE1YGL248W SET4P42948 560 aa9.02□□□□□ -0.97
PDE1YGL248W STS1P38637 319 aa9.01□□□□□ -0.97
PDE1YGL248W VMA1P17255 1071 aaKnown RBP8.99□□□□□ -0.97
PDE1YGL248W RCR1P38212 213 aa8.98□□□□□ -0.97
PDE1YGL248W TRP5P00931 707 aaKnown RBP8.94□□□□□ -0.98
PDE1YGL248W BMT6Q12291 365 aa8.94□□□□□ -0.98
PDE1YGL248W SAM3Q08986 587 aa8.93□□□□□ -0.98
PDE1YGL248W RTG1P32607 177 aa8.92□□□□□ -0.98
PDE1YGL248W YNL035CP53962 389 aaKnown RBP8.87□□□□□ -0.99
PDE1YGL248W NCR1Q12200 1170 aa8.85□□□□□ -0.99
PDE1YGL248W SEC61P32915 480 aa8.83□□□□□ -1
PDE1YGL248W ABP1P15891 592 aaKnown RBP8.81□□□□□ -1
PDE1YGL248W GYP5Q12344 894 aa8.81□□□□□ -1
PDE1YGL248W TFG1P41895 735 aaPredicted RBP8.77□□□□□ -1.01
PDE1YGL248W HTA1P04911 132 aaKnown RBP8.75□□□□□ -1.01
PDE1YGL248W HTA2P04912 132 aa8.75□□□□□ -1.01
PDE1YGL248W JIP4Q03361 876 aa8.75□□□□□ -1.01
PDE1YGL248W DCW1P36091 449 aa8.74□□□□□ -1.01
PDE1YGL248W DAN4P47179 1161 aa8.73□□□□□ -1.01
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms