RNA–Protein interactions for RNA: YGL155W

CDC43, Transcript of Beta subunit of geranylgeranyltransferase type I, yeastyeast

Gene CDC43, Length 1,131 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC43YGL155W FAP1P53971 965 aa12.65□□□□□ -0.38
CDC43YGL155W MTC1P47018 478 aaKnown RBP12.19□□□□□ -0.46
CDC43YGL155W PRY3P47033 881 aa11.98□□□□□ -0.49
CDC43YGL155W YCK3P39962 524 aa11.42□□□□□ -0.58
CDC43YGL155W DRS1P32892 752 aaKnown RBP11.41□□□□□ -0.58
CDC43YGL155W AAD16Q02895 342 aa11.28□□□□□ -0.6
CDC43YGL155W PRI1P10363 409 aa11.16□□□□□ -0.62
CDC43YGL155W HAA1Q12753 694 aaKnown RBP11.16□□□□□ -0.62
CDC43YGL155W TSR3Q12094 313 aaKnown RBP10.46□□□□□ -0.73
CDC43YGL155W ISW2Q08773 1120 aa10.39□□□□□ -0.75
CDC43YGL155W RPG1P38249 964 aaKnown RBP10.36□□□□□ -0.75
CDC43YGL155W YGL015CP33199 130 aa10.04□□□□□ -0.8
CDC43YGL155W MRPL32P25348 183 aa10□□□□□ -0.81
CDC43YGL155W BUD31P25337 157 aaPredicted RBP9.92□□□□□ -0.82
CDC43YGL155W DIP2Q12220 943 aaPredicted RBP9.86□□□□□ -0.83
CDC43YGL155W BFR2Q06631 534 aaKnown RBP9.66□□□□□ -0.86
CDC43YGL155W AVT3P36062 692 aa9.65□□□□□ -0.86
CDC43YGL155W RSE1Q04693 1361 aaKnown RBP9.41□□□□□ -0.9
CDC43YGL155W CDC27P38042 758 aa9.32□□□□□ -0.92
CDC43YGL155W SIS1P25294 352 aaKnown RBP9.24□□□□□ -0.93
CDC43YGL155W UBP10P53874 792 aaPredicted RBP9.19□□□□□ -0.94
CDC43YGL155W MAP2P38174 421 aaKnown RBP9.17□□□□□ -0.94
CDC43YGL155W REB1P21538 810 aa9.15□□□□□ -0.94
CDC43YGL155W RPL17AP05740 184 aaKnown RBP9.11□□□□□ -0.95
CDC43YGL155W RPL17BP46990 184 aaKnown RBP9.11□□□□□ -0.95
CDC43YGL155W SGS1P35187 1447 aa9.11□□□□□ -0.95
CDC43YGL155W UBP9P39967 754 aa8.97□□□□□ -0.97
CDC43YGL155W INO80P53115 1489 aa8.93□□□□□ -0.98
CDC43YGL155W YKR023WP36119 530 aaKnown RBP8.91□□□□□ -0.98
CDC43YGL155W SPA2P23201 1466 aaKnown RBP8.88□□□□□ -0.99
CDC43YGL155W TGL3P40308 642 aa8.83□□□□□ -1
CDC43YGL155W SPT21P35209 758 aa8.8□□□□□ -1
CDC43YGL155W TFA1P36100 482 aa8.79□□□□□ -1
CDC43YGL155W TIF4632P39936 914 aaKnown RBP8.78□□□□□ -1
CDC43YGL155W SSN2P38931 1420 aa8.76□□□□□ -1.01
CDC43YGL155W TCB3Q03640 1545 aaKnown RBP8.72□□□□□ -1.01
CDC43YGL155W DCD1P06773 312 aa8.71□□□□□ -1.02
CDC43YGL155W TFC8Q12308 588 aa8.71□□□□□ -1.02
CDC43YGL155W HOP09932 586 aa8.7□□□□□ -1.02
CDC43YGL155W SCY1P53009 804 aa8.69□□□□□ -1.02
CDC43YGL155W SLX5P32828 619 aaKnown RBP8.64□□□□□ -1.03
CDC43YGL155W TY1B-DR4Q07793 1604 aa8.55□□□□□ -1.04
CDC43YGL155W RIM101P33400 625 aa8.54□□□□□ -1.04
CDC43YGL155W HSL1P34244 1518 aa8.42□□□□□ -1.06
CDC43YGL155W SPT6P23615 1451 aaKnown RBP8.4□□□□□ -1.06
CDC43YGL155W YBL029C-AQ3E756 94 aa8.38□□□□□ -1.07
CDC43YGL155W BCH2P36122 765 aa8.37□□□□□ -1.07
CDC43YGL155W MON2P48563 1636 aaPredicted RBP8.34□□□□□ -1.07
CDC43YGL155W MST1P07236 462 aa8.33□□□□□ -1.08
CDC43YGL155W OXP1P28273 1286 aa8.31□□□□□ -1.08
CDC43YGL155W HIR3P47171 1648 aa8.29□□□□□ -1.08
CDC43YGL155W XRN1P22147 1528 aaKnown RBP8.27□□□□□ -1.09
CDC43YGL155W SWR1Q05471 1514 aa8.25□□□□□ -1.09
CDC43YGL155W VNX1P42839 908 aa8.24□□□□□ -1.09
CDC43YGL155W THO2P53552 1597 aaKnown RBP8.19□□□□□ -1.1
CDC43YGL155W AIR2Q12476 344 aaKnown RBP8.19□□□□□ -1.1
CDC43YGL155W REV3P14284 1504 aa8.17□□□□□ -1.1
CDC43YGL155W SIN3P22579 1536 aa8.14□□□□□ -1.11
CDC43YGL155W YOR238WQ08634 303 aa8.14□□□□□ -1.11
CDC43YGL155W SPP1Q03012 353 aa8.12□□□□□ -1.11
CDC43YGL155W SKI3P17883 1432 aaKnown RBP8.11□□□□□ -1.11
CDC43YGL155W FKH1P40466 484 aa8.09□□□□□ -1.11
CDC43YGL155W YJL171CP46992 396 aa8.09□□□□□ -1.11
CDC43YGL155W SSK2P53599 1579 aa8.09□□□□□ -1.11
CDC43YGL155W PTP3P40048 928 aa8.08□□□□□ -1.12
CDC43YGL155W YIL055CP40523 627 aaKnown RBP8.07□□□□□ -1.12
CDC43YGL155W YAH1Q12184 172 aaKnown RBP8.07□□□□□ -1.12
CDC43YGL155W MYO2P19524 1574 aaKnown RBP8.06□□□□□ -1.12
CDC43YGL155W BDF1P35817 686 aa8.05□□□□□ -1.12
CDC43YGL155W TAF2P23255 1407 aa8.04□□□□□ -1.12
CDC43YGL155W ESP1Q03018 1630 aa8.04□□□□□ -1.12
CDC43YGL155W CHD1P32657 1468 aa8.04□□□□□ -1.12
CDC43YGL155W EPS1P40557 701 aa8.02□□□□□ -1.13
CDC43YGL155W RSM7P47150 247 aa8□□□□□ -1.13
CDC43YGL155W KOG1P38873 1557 aa8□□□□□ -1.13
CDC43YGL155W NSR1P27476 414 aaKnown RBP RIP-Chip data7.99□□□□□ -1.13not detected
CDC43YGL155W WSC3Q12215 556 aa7.99□□□□□ -1.13
CDC43YGL155W YLR271WQ06152 274 aa7.98□□□□□ -1.13
CDC43YGL155W MMS22Q06164 1454 aa7.97□□□□□ -1.13
CDC43YGL155W BUD4P47136 1447 aa7.95□□□□□ -1.14
CDC43YGL155W TIF11P38912 153 aaKnown RBP7.95□□□□□ -1.14
CDC43YGL155W YTA7P40340 1379 aa7.94□□□□□ -1.14
CDC43YGL155W DNA2P38859 1522 aa7.93□□□□□ -1.14
CDC43YGL155W SSP1P38871 571 aa7.93□□□□□ -1.14
CDC43YGL155W POL1P13382 1468 aa7.92□□□□□ -1.14
CDC43YGL155W ATG2P53855 1592 aa7.9□□□□□ -1.14
CDC43YGL155W STU1P38198 1513 aa7.9□□□□□ -1.14
CDC43YGL155W YPK9Q12697 1472 aa7.9□□□□□ -1.14
CDC43YGL155W AI2P03876 854 aa7.9□□□□□ -1.14
CDC43YGL155W ECM5Q03214 1411 aa7.88□□□□□ -1.15
CDC43YGL155W BMT6Q12291 365 aa7.88□□□□□ -1.15
CDC43YGL155W YAP5P40574 245 aa7.86□□□□□ -1.15
CDC43YGL155W LDB19Q12502 818 aa7.84□□□□□ -1.15
CDC43YGL155W BBC1P47068 1157 aa7.82□□□□□ -1.16
CDC43YGL155W PSD2P53037 1138 aaKnown RBP7.82□□□□□ -1.16
CDC43YGL155W RKR1Q04781 1562 aa7.82□□□□□ -1.16
CDC43YGL155W TAF7Q05021 590 aa7.81□□□□□ -1.16
CDC43YGL155W SAS10Q12136 610 aaPredicted RBP7.81□□□□□ -1.16
CDC43YGL155W IOC2Q12072 812 aa7.8□□□□□ -1.16
CDC43YGL155W YOR1P53049 1477 aa7.8□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 171.6 ms