RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W FAP1P53971 965 aa5.38□□□□□ -1.55
SMC1YFL008W MTC1P47018 478 aaKnown RBP5.08□□□□□ -1.6
SMC1YFL008W PRY3P47033 881 aa5.04□□□□□ -1.6
SMC1YFL008W AAD16Q02895 342 aa4.66□□□□□ -1.66
SMC1YFL008W HAA1Q12753 694 aaKnown RBP4.58□□□□□ -1.68
SMC1YFL008W PRI1P10363 409 aa4.55□□□□□ -1.68
SMC1YFL008W YCK3P39962 524 aa4.52□□□□□ -1.69
SMC1YFL008W DRS1P32892 752 aaKnown RBP4.47□□□□□ -1.69
SMC1YFL008W TSR3Q12094 313 aaKnown RBP4.41□□□□□ -1.7
SMC1YFL008W RPG1P38249 964 aaKnown RBP4.37□□□□□ -1.71
SMC1YFL008W ISW2Q08773 1120 aa4.37□□□□□ -1.71
SMC1YFL008W MRPL32P25348 183 aa4.22□□□□□ -1.73
SMC1YFL008W YGL015CP33199 130 aa4.13□□□□□ -1.75
SMC1YFL008W AVT3P36062 692 aa4.02□□□□□ -1.77
SMC1YFL008W REB1P21538 810 aa3.98□□□□□ -1.77
SMC1YFL008W RSE1Q04693 1361 aaKnown RBP3.96□□□□□ -1.78
SMC1YFL008W BUD31P25337 157 aaPredicted RBP3.96□□□□□ -1.78
SMC1YFL008W DIP2Q12220 943 aaPredicted RBP3.94□□□□□ -1.78
SMC1YFL008W RPL17AP05740 184 aaKnown RBP3.92□□□□□ -1.78
SMC1YFL008W RPL17BP46990 184 aaKnown RBP3.92□□□□□ -1.78
SMC1YFL008W SIS1P25294 352 aaKnown RBP3.87□□□□□ -1.79
SMC1YFL008W CDC27P38042 758 aa3.85□□□□□ -1.79
SMC1YFL008W MAP2P38174 421 aaKnown RBP3.82□□□□□ -1.8
SMC1YFL008W BFR2Q06631 534 aaKnown RBP3.74□□□□□ -1.81
SMC1YFL008W UBP10P53874 792 aaPredicted RBP3.73□□□□□ -1.81
SMC1YFL008W DCD1P06773 312 aa3.73□□□□□ -1.81
SMC1YFL008W UBP9P39967 754 aa3.73□□□□□ -1.81
SMC1YFL008W HOP09932 586 aa3.72□□□□□ -1.81
SMC1YFL008W SCY1P53009 804 aa3.68□□□□□ -1.82
SMC1YFL008W SPT21P35209 758 aa3.68□□□□□ -1.82
SMC1YFL008W TIF4632P39936 914 aaKnown RBP3.68□□□□□ -1.82
SMC1YFL008W YKR023WP36119 530 aaKnown RBP3.66□□□□□ -1.82
SMC1YFL008W TFA1P36100 482 aa3.64□□□□□ -1.83
SMC1YFL008W SLX5P32828 619 aaKnown RBP3.64□□□□□ -1.83
SMC1YFL008W TFC8Q12308 588 aa3.6□□□□□ -1.83
SMC1YFL008W TGL3P40308 642 aa3.58□□□□□ -1.84
SMC1YFL008W RIM101P33400 625 aa3.53□□□□□ -1.84
SMC1YFL008W YBL029C-AQ3E756 94 aa3.5□□□□□ -1.85
SMC1YFL008W BCH2P36122 765 aa3.49□□□□□ -1.85
SMC1YFL008W OXP1P28273 1286 aa3.45□□□□□ -1.86
SMC1YFL008W WSC3Q12215 556 aa3.45□□□□□ -1.86
SMC1YFL008W YJL171CP46992 396 aa3.44□□□□□ -1.86
SMC1YFL008W SPP1Q03012 353 aa3.41□□□□□ -1.86
SMC1YFL008W YOR238WQ08634 303 aa3.4□□□□□ -1.87
SMC1YFL008W EPS1P40557 701 aa3.37□□□□□ -1.87
SMC1YFL008W VNX1P42839 908 aa3.37□□□□□ -1.87
SMC1YFL008W BDF1P35817 686 aa3.36□□□□□ -1.87
SMC1YFL008W GTT3P39996 337 aa3.34□□□□□ -1.87
SMC1YFL008W PTP3P40048 928 aa3.34□□□□□ -1.88
SMC1YFL008W YIL055CP40523 627 aaKnown RBP3.31□□□□□ -1.88
SMC1YFL008W YLR271WQ06152 274 aa3.29□□□□□ -1.88
SMC1YFL008W AIR2Q12476 344 aaKnown RBP3.29□□□□□ -1.88
SMC1YFL008W MST1P07236 462 aa3.29□□□□□ -1.88
SMC1YFL008W PIB1Q06651 286 aa3.29□□□□□ -1.88
SMC1YFL008W YAP5P40574 245 aa3.28□□□□□ -1.88
SMC1YFL008W TIF11P38912 153 aaKnown RBP3.28□□□□□ -1.88
SMC1YFL008W BMT6Q12291 365 aa3.27□□□□□ -1.89
SMC1YFL008W LDB19Q12502 818 aa3.26□□□□□ -1.89
SMC1YFL008W BBC1P47068 1157 aa3.26□□□□□ -1.89
SMC1YFL008W FKH1P40466 484 aa3.25□□□□□ -1.89
SMC1YFL008W ULI1P43604 169 aa3.25□□□□□ -1.89
SMC1YFL008W PSD2P53037 1138 aaKnown RBP3.25□□□□□ -1.89
SMC1YFL008W YAH1Q12184 172 aaKnown RBP3.24□□□□□ -1.89
SMC1YFL008W AI2P03876 854 aa3.19□□□□□ -1.9
SMC1YFL008W CST9Q06032 482 aa3.18□□□□□ -1.9
SMC1YFL008W RSM7P47150 247 aa3.17□□□□□ -1.9
SMC1YFL008W SET4P42948 560 aa3.16□□□□□ -1.9
SMC1YFL008W SSP1P38871 571 aa3.16□□□□□ -1.9
SMC1YFL008W RTG1P32607 177 aa3.15□□□□□ -1.9
SMC1YFL008W NSR1P27476 414 aaKnown RBP RIP-Chip data3.15□□□□□ -1.91not detected
SMC1YFL008W NCR1Q12200 1170 aa3.15□□□□□ -1.91
SMC1YFL008W IOC2Q12072 812 aa3.14□□□□□ -1.91
SMC1YFL008W TFG1P41895 735 aaPredicted RBP3.14□□□□□ -1.91
SMC1YFL008W RCR1P38212 213 aa3.13□□□□□ -1.91
SMC1YFL008W VPS29P38759 282 aa3.11□□□□□ -1.91
SMC1YFL008W TRP5P00931 707 aaKnown RBP3.11□□□□□ -1.91
SMC1YFL008W EAP1P36041 632 aaKnown RBP3.1□□□□□ -1.91
SMC1YFL008W SAP30P38429 201 aa3.1□□□□□ -1.91
SMC1YFL008W MRM1P25270 412 aa3.09□□□□□ -1.92
SMC1YFL008W MGA2P40578 1113 aa3.08□□□□□ -1.92
SMC1YFL008W YOL036WQ08206 761 aa3.08□□□□□ -1.92
SMC1YFL008W YFR006WP43590 535 aa3.08□□□□□ -1.92
SMC1YFL008W YNL035CP53962 389 aaKnown RBP3.07□□□□□ -1.92
SMC1YFL008W MSB4Q12317 492 aa3.07□□□□□ -1.92
SMC1YFL008W BCK2P33306 851 aa3.06□□□□□ -1.92
SMC1YFL008W RAM2P29703 316 aa3.06□□□□□ -1.92
SMC1YFL008W NST1P53935 1240 aa3.05□□□□□ -1.92
SMC1YFL008W STS1P38637 319 aa3.05□□□□□ -1.92
SMC1YFL008W SEC61P32915 480 aa3.03□□□□□ -1.92
SMC1YFL008W DBP1P24784 617 aaKnown RBP3.03□□□□□ -1.92
SMC1YFL008W CHL1P22516 861 aaPredicted RBP3□□□□□ -1.93
SMC1YFL008W DCW1P36091 449 aa2.99□□□□□ -1.93
SMC1YFL008W YDL129WQ07555 291 aa2.99□□□□□ -1.93
SMC1YFL008W VRP1P37370 817 aa2.99□□□□□ -1.93
SMC1YFL008W EDS1P38073 919 aa2.98□□□□□ -1.93
SMC1YFL008W VMA1P17255 1071 aaKnown RBP2.98□□□□□ -1.93
SMC1YFL008W YMR1P47147 688 aaKnown RBP RIP-Chip data2.98□□□□□ -1.93not detected
SMC1YFL008W ELP4Q02884 456 aaKnown RBP2.98□□□□□ -1.93
SMC1YFL008W PRE3P38624 215 aa2.97□□□□□ -1.93
SMC1YFL008W SOL3P38858 249 aa2.97□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms