RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C MTC1P47018 478 aaKnown RBP15.83■□□□□ 0.12
RTR1YER139C FAP1P53971 965 aa14.84□□□□□ -0.03
RTR1YER139C DRS1P32892 752 aaKnown RBP14.27□□□□□ -0.13
RTR1YER139C PRY3P47033 881 aa13.97□□□□□ -0.17
RTR1YER139C PRI1P10363 409 aa13.63□□□□□ -0.23
RTR1YER139C AAD16Q02895 342 aa13.6□□□□□ -0.23
RTR1YER139C ISW2Q08773 1120 aa13.22□□□□□ -0.29
RTR1YER139C YCK3P39962 524 aa13.19□□□□□ -0.3
RTR1YER139C RPG1P38249 964 aaKnown RBP13.11□□□□□ -0.31
RTR1YER139C HAA1Q12753 694 aaKnown RBP13.04□□□□□ -0.32
RTR1YER139C TSR3Q12094 313 aaKnown RBP12.87□□□□□ -0.35
RTR1YER139C DIP2Q12220 943 aaPredicted RBP12.69□□□□□ -0.38
RTR1YER139C RSE1Q04693 1361 aaKnown RBP12.41□□□□□ -0.42
RTR1YER139C MRPL32P25348 183 aa12.34□□□□□ -0.43
RTR1YER139C AVT3P36062 692 aa12.08□□□□□ -0.48
RTR1YER139C RPL17AP05740 184 aaKnown RBP12.06□□□□□ -0.48
RTR1YER139C RPL17BP46990 184 aaKnown RBP12.06□□□□□ -0.48
RTR1YER139C REB1P21538 810 aa12.05□□□□□ -0.48
RTR1YER139C YGL015CP33199 130 aa11.96□□□□□ -0.49
RTR1YER139C CDC27P38042 758 aa11.67□□□□□ -0.54
RTR1YER139C BFR2Q06631 534 aaKnown RBP11.61□□□□□ -0.55
RTR1YER139C SPT21P35209 758 aa11.52□□□□□ -0.57
RTR1YER139C YKR023WP36119 530 aaKnown RBP11.5□□□□□ -0.57
RTR1YER139C UBP10P53874 792 aaPredicted RBP11.38□□□□□ -0.59
RTR1YER139C MAP2P38174 421 aaKnown RBP11.36□□□□□ -0.59
RTR1YER139C HOP09932 586 aa11.27□□□□□ -0.61
RTR1YER139C TFC8Q12308 588 aa11.26□□□□□ -0.61
RTR1YER139C DCD1P06773 312 aa11.25□□□□□ -0.61
RTR1YER139C BUD31P25337 157 aaPredicted RBP11.21□□□□□ -0.61
RTR1YER139C SCY1P53009 804 aa11.04□□□□□ -0.64
RTR1YER139C RIM101P33400 625 aa10.97□□□□□ -0.65
RTR1YER139C SLX5P32828 619 aaKnown RBP10.91□□□□□ -0.66
RTR1YER139C TIF4632P39936 914 aaKnown RBP10.91□□□□□ -0.66
RTR1YER139C BCH2P36122 765 aa10.87□□□□□ -0.67
RTR1YER139C TGL3P40308 642 aa10.85□□□□□ -0.67
RTR1YER139C UBP9P39967 754 aa10.67□□□□□ -0.7
RTR1YER139C SIS1P25294 352 aaKnown RBP10.62□□□□□ -0.71
RTR1YER139C OXP1P28273 1286 aa10.6□□□□□ -0.71
RTR1YER139C EPS1P40557 701 aa10.57□□□□□ -0.72
RTR1YER139C BDF1P35817 686 aa10.53□□□□□ -0.72
RTR1YER139C PTP3P40048 928 aa10.47□□□□□ -0.73
RTR1YER139C YIL055CP40523 627 aaKnown RBP10.42□□□□□ -0.74
RTR1YER139C MST1P07236 462 aa10.34□□□□□ -0.75
RTR1YER139C YBL029C-AQ3E756 94 aa10.3□□□□□ -0.76
RTR1YER139C YOR238WQ08634 303 aa10.29□□□□□ -0.76
RTR1YER139C BBC1P47068 1157 aa10.27□□□□□ -0.77
RTR1YER139C RSM7P47150 247 aa10.27□□□□□ -0.77
RTR1YER139C AI2P03876 854 aa10.24□□□□□ -0.77
RTR1YER139C NSR1P27476 414 aaKnown RBP RIP-Chip data10.24□□□□□ -0.77not detected
RTR1YER139C YAH1Q12184 172 aaKnown RBP10.23□□□□□ -0.77
RTR1YER139C YAP5P40574 245 aa10.16□□□□□ -0.78
RTR1YER139C VNX1P42839 908 aa10.14□□□□□ -0.79
RTR1YER139C WSC3Q12215 556 aa10.06□□□□□ -0.8
RTR1YER139C SPP1Q03012 353 aa10.04□□□□□ -0.8
RTR1YER139C YLR271WQ06152 274 aa10.02□□□□□ -0.81
RTR1YER139C TFA1P36100 482 aa9.96□□□□□ -0.82
RTR1YER139C GTT3P39996 337 aa9.95□□□□□ -0.82
RTR1YER139C PSD2P53037 1138 aaKnown RBP9.94□□□□□ -0.82
RTR1YER139C TIF11P38912 153 aaKnown RBP9.91□□□□□ -0.82
RTR1YER139C FKH1P40466 484 aa9.88□□□□□ -0.83
RTR1YER139C PIB1Q06651 286 aa9.88□□□□□ -0.83
RTR1YER139C AIR2Q12476 344 aaKnown RBP9.88□□□□□ -0.83
RTR1YER139C MRM1P25270 412 aa9.85□□□□□ -0.83
RTR1YER139C YJL171CP46992 396 aa9.79□□□□□ -0.84
RTR1YER139C LDB19Q12502 818 aa9.79□□□□□ -0.84
RTR1YER139C ULI1P43604 169 aa9.78□□□□□ -0.84
RTR1YER139C SSP1P38871 571 aa9.75□□□□□ -0.85
RTR1YER139C IOC2Q12072 812 aa9.75□□□□□ -0.85
RTR1YER139C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.74□□□□□ -0.85not detected
RTR1YER139C MSB4Q12317 492 aa9.69□□□□□ -0.86
RTR1YER139C CST9Q06032 482 aa9.66□□□□□ -0.86
RTR1YER139C YMR1P47147 688 aaKnown RBP RIP-Chip data9.64□□□□□ -0.87not detected
RTR1YER139C YOL036WQ08206 761 aa9.64□□□□□ -0.87
RTR1YER139C BMT6Q12291 365 aa9.64□□□□□ -0.87
RTR1YER139C VPS29P38759 282 aa9.63□□□□□ -0.87
RTR1YER139C EAP1P36041 632 aaKnown RBP9.62□□□□□ -0.87
RTR1YER139C SET4P42948 560 aa9.62□□□□□ -0.87
RTR1YER139C DBP1P24784 617 aaKnown RBP9.61□□□□□ -0.87
RTR1YER139C YFR006WP43590 535 aa9.59□□□□□ -0.87
RTR1YER139C RTG3P38165 486 aa9.58□□□□□ -0.88
RTR1YER139C MGA2P40578 1113 aa9.58□□□□□ -0.88
RTR1YER139C TRP5P00931 707 aaKnown RBP9.57□□□□□ -0.88
RTR1YER139C RTG1P32607 177 aa9.57□□□□□ -0.88
RTR1YER139C STS1P38637 319 aa9.56□□□□□ -0.88
RTR1YER139C VMA1P17255 1071 aaKnown RBP9.55□□□□□ -0.88
RTR1YER139C RCR1P38212 213 aa9.49□□□□□ -0.89
RTR1YER139C SAM3Q08986 587 aa9.49□□□□□ -0.89
RTR1YER139C YNL035CP53962 389 aaKnown RBP9.48□□□□□ -0.89
RTR1YER139C NCR1Q12200 1170 aa9.48□□□□□ -0.89
RTR1YER139C SEC61P32915 480 aa9.45□□□□□ -0.9
RTR1YER139C GYP5Q12344 894 aa9.34□□□□□ -0.91
RTR1YER139C ABP1P15891 592 aaKnown RBP9.33□□□□□ -0.92
RTR1YER139C TFG1P41895 735 aaPredicted RBP9.33□□□□□ -0.92
RTR1YER139C DAN4P47179 1161 aa9.33□□□□□ -0.92
RTR1YER139C JIP4Q03361 876 aa9.31□□□□□ -0.92
RTR1YER139C SAP30P38429 201 aa9.3□□□□□ -0.92
RTR1YER139C HTA1P04911 132 aaKnown RBP9.28□□□□□ -0.92
RTR1YER139C HTA2P04912 132 aa9.28□□□□□ -0.92
RTR1YER139C DCW1P36091 449 aa9.28□□□□□ -0.92
RTR1YER139C YDL129WQ07555 291 aa9.25□□□□□ -0.93
Retrieved 100 of 5,963 RNA–protein pairs in 7.2 ms