RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W MTC1P47018 478 aaKnown RBP15.87■□□□□ 0.13
PRE1YER012W DRS1P32892 752 aaKnown RBP15.02■□□□□ -0
PRE1YER012W FAP1P53971 965 aa14.22□□□□□ -0.13
PRE1YER012W PRY3P47033 881 aa13.37□□□□□ -0.27
PRE1YER012W PRI1P10363 409 aa13.3□□□□□ -0.28
PRE1YER012W AAD16Q02895 342 aa13.2□□□□□ -0.3
PRE1YER012W DIP2Q12220 943 aaPredicted RBP13.1□□□□□ -0.31
PRE1YER012W ISW2Q08773 1120 aa13.09□□□□□ -0.31
PRE1YER012W RPG1P38249 964 aaKnown RBP13.03□□□□□ -0.32
PRE1YER012W TSR3Q12094 313 aaKnown RBP12.68□□□□□ -0.38
PRE1YER012W YCK3P39962 524 aa12.63□□□□□ -0.39
PRE1YER012W AVT3P36062 692 aa12.62□□□□□ -0.39
PRE1YER012W RSE1Q04693 1361 aaKnown RBP12.58□□□□□ -0.4
PRE1YER012W BFR2Q06631 534 aaKnown RBP12.53□□□□□ -0.4
PRE1YER012W HAA1Q12753 694 aaKnown RBP12.42□□□□□ -0.42
PRE1YER012W RPL17AP05740 184 aaKnown RBP12.24□□□□□ -0.45
PRE1YER012W RPL17BP46990 184 aaKnown RBP12.24□□□□□ -0.45
PRE1YER012W REB1P21538 810 aa12.15□□□□□ -0.46
PRE1YER012W MRPL32P25348 183 aa12.08□□□□□ -0.48
PRE1YER012W SPT21P35209 758 aa11.67□□□□□ -0.54
PRE1YER012W CDC27P38042 758 aa11.57□□□□□ -0.56
PRE1YER012W YKR023WP36119 530 aaKnown RBP11.55□□□□□ -0.56
PRE1YER012W YGL015CP33199 130 aa11.49□□□□□ -0.57
PRE1YER012W HOP09932 586 aa11.38□□□□□ -0.59
PRE1YER012W DCD1P06773 312 aa11.37□□□□□ -0.59
PRE1YER012W TFC8Q12308 588 aa11.29□□□□□ -0.6
PRE1YER012W RIM101P33400 625 aa11.27□□□□□ -0.61
PRE1YER012W MAP2P38174 421 aaKnown RBP11.19□□□□□ -0.62
PRE1YER012W UBP10P53874 792 aaPredicted RBP11.08□□□□□ -0.64
PRE1YER012W TFA1P36100 482 aa11.04□□□□□ -0.64
PRE1YER012W SCY1P53009 804 aa10.99□□□□□ -0.65
PRE1YER012W OXP1P28273 1286 aa10.96□□□□□ -0.65
PRE1YER012W BCH2P36122 765 aa10.95□□□□□ -0.66
PRE1YER012W PTP3P40048 928 aa10.8□□□□□ -0.68
PRE1YER012W SLX5P32828 619 aaKnown RBP10.78□□□□□ -0.68
PRE1YER012W YIL055CP40523 627 aaKnown RBP10.76□□□□□ -0.69
PRE1YER012W YAH1Q12184 172 aaKnown RBP10.73□□□□□ -0.69
PRE1YER012W EPS1P40557 701 aa10.68□□□□□ -0.7
PRE1YER012W TIF4632P39936 914 aaKnown RBP10.64□□□□□ -0.71
PRE1YER012W BDF1P35817 686 aa10.63□□□□□ -0.71
PRE1YER012W RSM7P47150 247 aa10.59□□□□□ -0.71
PRE1YER012W TGL3P40308 642 aa10.57□□□□□ -0.72
PRE1YER012W AI2P03876 854 aa10.51□□□□□ -0.73
PRE1YER012W BUD31P25337 157 aaPredicted RBP10.48□□□□□ -0.73
PRE1YER012W YLR271WQ06152 274 aa10.48□□□□□ -0.73
PRE1YER012W BBC1P47068 1157 aa10.46□□□□□ -0.73
PRE1YER012W SSP1P38871 571 aa10.34□□□□□ -0.75
PRE1YER012W PSD2P53037 1138 aaKnown RBP10.27□□□□□ -0.77
PRE1YER012W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.23□□□□□ -0.77not detected
PRE1YER012W UBP9P39967 754 aa10.2□□□□□ -0.78
PRE1YER012W MRM1P25270 412 aa10.17□□□□□ -0.78
PRE1YER012W YOR238WQ08634 303 aa10.16□□□□□ -0.78
PRE1YER012W CST9Q06032 482 aa10.15□□□□□ -0.78
PRE1YER012W MST1P07236 462 aa10.12□□□□□ -0.79
PRE1YER012W YAP5P40574 245 aa10.11□□□□□ -0.79
PRE1YER012W YBL029C-AQ3E756 94 aa10.09□□□□□ -0.79
PRE1YER012W NSR1P27476 414 aaKnown RBP RIP-Chip data10.08□□□□□ -0.8not detected
PRE1YER012W PIB1Q06651 286 aa10.06□□□□□ -0.8
PRE1YER012W SIS1P25294 352 aaKnown RBP10.05□□□□□ -0.8
PRE1YER012W MGA2P40578 1113 aa10.05□□□□□ -0.8
PRE1YER012W WSC3Q12215 556 aa9.99□□□□□ -0.81
PRE1YER012W RCR1P38212 213 aa9.92□□□□□ -0.82
PRE1YER012W VNX1P42839 908 aa9.92□□□□□ -0.82
PRE1YER012W GTT3P39996 337 aa9.91□□□□□ -0.82
PRE1YER012W RTG3P38165 486 aa9.89□□□□□ -0.83
PRE1YER012W VPS29P38759 282 aa9.89□□□□□ -0.83
PRE1YER012W YFR006WP43590 535 aa9.89□□□□□ -0.83
PRE1YER012W SPP1Q03012 353 aa9.85□□□□□ -0.83
PRE1YER012W DBP1P24784 617 aaKnown RBP9.84□□□□□ -0.83
PRE1YER012W YMR1P47147 688 aaKnown RBP RIP-Chip data9.83□□□□□ -0.84not detected
PRE1YER012W STS1P38637 319 aa9.81□□□□□ -0.84
PRE1YER012W TIF11P38912 153 aaKnown RBP9.74□□□□□ -0.85
PRE1YER012W VMA1P17255 1071 aaKnown RBP9.69□□□□□ -0.86
PRE1YER012W SET4P42948 560 aa9.69□□□□□ -0.86
PRE1YER012W ULI1P43604 169 aa9.67□□□□□ -0.86
PRE1YER012W YOL036WQ08206 761 aa9.66□□□□□ -0.86
PRE1YER012W LDB19Q12502 818 aa9.63□□□□□ -0.87
PRE1YER012W RAM2P29703 316 aa9.6□□□□□ -0.87
PRE1YER012W IOC2Q12072 812 aa9.6□□□□□ -0.87
PRE1YER012W MSB4Q12317 492 aa9.58□□□□□ -0.88
PRE1YER012W FKH1P40466 484 aa9.57□□□□□ -0.88
PRE1YER012W AIR2Q12476 344 aaKnown RBP9.57□□□□□ -0.88
PRE1YER012W TRP5P00931 707 aaKnown RBP9.56□□□□□ -0.88
PRE1YER012W SAM3Q08986 587 aa9.56□□□□□ -0.88
PRE1YER012W EAP1P36041 632 aaKnown RBP9.52□□□□□ -0.89
PRE1YER012W MIF2P35201 549 aa9.5□□□□□ -0.89
PRE1YER012W GYP5Q12344 894 aa9.49□□□□□ -0.89
PRE1YER012W MAK11P20484 414 aaKnown RBP9.47□□□□□ -0.89
PRE1YER012W RTG1P32607 177 aa9.47□□□□□ -0.89
PRE1YER012W DCW1P36091 449 aa9.46□□□□□ -0.9
PRE1YER012W YJL171CP46992 396 aa9.46□□□□□ -0.9
PRE1YER012W EDS1P38073 919 aa9.44□□□□□ -0.9
PRE1YER012W COQ8P27697 501 aa9.39□□□□□ -0.91
PRE1YER012W YNL035CP53962 389 aaKnown RBP9.39□□□□□ -0.91
PRE1YER012W HTA1P04911 132 aaKnown RBP9.38□□□□□ -0.91
PRE1YER012W HTA2P04912 132 aa9.38□□□□□ -0.91
PRE1YER012W NCR1Q12200 1170 aa9.38□□□□□ -0.91
PRE1YER012W PTC3P34221 468 aaKnown RBP9.37□□□□□ -0.91
PRE1YER012W GRE2Q12068 342 aaKnown RBP9.37□□□□□ -0.91
PRE1YER012W BMT6Q12291 365 aa9.35□□□□□ -0.91
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms