RNA–Protein interactions for RNA: YDR392W

SPT3, Transcript of Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, yeastyeast

Gene SPT3, Length 1,014 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT3YDR392W MTC1P47018 478 aaKnown RBP15.82■□□□□ 0.12
SPT3YDR392W DRS1P32892 752 aaKnown RBP14.58□□□□□ -0.08
SPT3YDR392W FAP1P53971 965 aa14.45□□□□□ -0.1
SPT3YDR392W MON2P48563 1636 aaPredicted RBP13.97□□□□□ -0.17
SPT3YDR392W INO80P53115 1489 aa13.89□□□□□ -0.19
SPT3YDR392W PRY3P47033 881 aa13.56□□□□□ -0.24
SPT3YDR392W RSE1Q04693 1361 aaKnown RBP13.52□□□□□ -0.25
SPT3YDR392W PRI1P10363 409 aa13.44□□□□□ -0.26
SPT3YDR392W AAD16Q02895 342 aa13.41□□□□□ -0.26
SPT3YDR392W DNA2P38859 1522 aa13.21□□□□□ -0.29
SPT3YDR392W ISW2Q08773 1120 aa13.2□□□□□ -0.3
SPT3YDR392W RPG1P38249 964 aaKnown RBP13.02□□□□□ -0.33
SPT3YDR392W KOG1P38873 1557 aa12.9□□□□□ -0.34
SPT3YDR392W DIP2Q12220 943 aaPredicted RBP12.87□□□□□ -0.35
SPT3YDR392W HAA1Q12753 694 aaKnown RBP12.78□□□□□ -0.36
SPT3YDR392W SPA2P23201 1466 aaKnown RBP12.73□□□□□ -0.37
SPT3YDR392W YCK3P39962 524 aa12.71□□□□□ -0.37
SPT3YDR392W TSR3Q12094 313 aaKnown RBP12.66□□□□□ -0.38
SPT3YDR392W SWR1Q05471 1514 aa12.66□□□□□ -0.38
SPT3YDR392W MIF2P35201 549 aa12.33□□□□□ -0.44
SPT3YDR392W AVT3P36062 692 aa12.33□□□□□ -0.44
SPT3YDR392W MRPL32P25348 183 aa12.25□□□□□ -0.45
SPT3YDR392W RPL17AP05740 184 aaKnown RBP12.09□□□□□ -0.47
SPT3YDR392W REB1P21538 810 aa12.09□□□□□ -0.47
SPT3YDR392W RPL17BP46990 184 aaKnown RBP12.09□□□□□ -0.47
SPT3YDR392W BFR2Q06631 534 aaKnown RBP12.04□□□□□ -0.48
SPT3YDR392W TY1B-DR4Q07793 1604 aa11.94□□□□□ -0.5
SPT3YDR392W YGL015CP33199 130 aa11.83□□□□□ -0.52
SPT3YDR392W YFR006WP43590 535 aa11.78□□□□□ -0.52
SPT3YDR392W TCB3Q03640 1545 aaKnown RBP11.77□□□□□ -0.52
SPT3YDR392W REV3P14284 1504 aa11.54□□□□□ -0.56
SPT3YDR392W SPT21P35209 758 aa11.53□□□□□ -0.56
SPT3YDR392W CDC27P38042 758 aa11.51□□□□□ -0.57
SPT3YDR392W ECM5Q03214 1411 aa11.51□□□□□ -0.57
SPT3YDR392W YKR023WP36119 530 aaKnown RBP11.45□□□□□ -0.58
SPT3YDR392W MDS3P53094 1487 aa11.36□□□□□ -0.59
SPT3YDR392W THO2P53552 1597 aaKnown RBP11.33□□□□□ -0.6
SPT3YDR392W BUD4P47136 1447 aa11.3□□□□□ -0.6
SPT3YDR392W UBP10P53874 792 aaPredicted RBP11.29□□□□□ -0.6
SPT3YDR392W TFC8Q12308 588 aa11.24□□□□□ -0.61
SPT3YDR392W HOP09932 586 aa11.21□□□□□ -0.61
SPT3YDR392W SPT6P23615 1451 aaKnown RBP11.19□□□□□ -0.62
SPT3YDR392W MAP2P38174 421 aaKnown RBP11.19□□□□□ -0.62
SPT3YDR392W BPT1P14772 1559 aa11.18□□□□□ -0.62
SPT3YDR392W HSL1P34244 1518 aa11.18□□□□□ -0.62
SPT3YDR392W RIM101P33400 625 aa11.14□□□□□ -0.63
SPT3YDR392W ABP1P15891 592 aaKnown RBP11.13□□□□□ -0.63
SPT3YDR392W PEP1P32319 1579 aa11.12□□□□□ -0.63
SPT3YDR392W DCD1P06773 312 aa11.12□□□□□ -0.63
SPT3YDR392W MYO2P19524 1574 aaKnown RBP11.01□□□□□ -0.65
SPT3YDR392W BNI1P41832 1953 aa10.98□□□□□ -0.65
SPT3YDR392W HIR3P47171 1648 aa10.97□□□□□ -0.65
SPT3YDR392W YCF1P39109 1515 aaKnown RBP10.96□□□□□ -0.65
SPT3YDR392W SCY1P53009 804 aa10.94□□□□□ -0.66
SPT3YDR392W LTE1P07866 1435 aa10.92□□□□□ -0.66
SPT3YDR392W IRC20Q06554 1556 aa10.9□□□□□ -0.67
SPT3YDR392W DNF1P32660 1571 aa10.88□□□□□ -0.67
SPT3YDR392W BUD31P25337 157 aaPredicted RBP10.87□□□□□ -0.67
SPT3YDR392W TIF4632P39936 914 aaKnown RBP10.87□□□□□ -0.67
SPT3YDR392W SLX5P32828 619 aaKnown RBP10.86□□□□□ -0.67
SPT3YDR392W BCH2P36122 765 aa10.86□□□□□ -0.67
SPT3YDR392W RPA190P10964 1664 aaKnown RBP10.83□□□□□ -0.68
SPT3YDR392W TAF2P23255 1407 aa10.83□□□□□ -0.68
SPT3YDR392W TGL3P40308 642 aa10.82□□□□□ -0.68
SPT3YDR392W CDC25P04821 1589 aa10.81□□□□□ -0.68
SPT3YDR392W MET5P47169 1442 aa10.76□□□□□ -0.69
SPT3YDR392W ESC1Q03661 1658 aaKnown RBP10.7□□□□□ -0.7
SPT3YDR392W ATG2P53855 1592 aa10.7□□□□□ -0.7
SPT3YDR392W OXP1P28273 1286 aa10.7□□□□□ -0.7
SPT3YDR392W MMS1Q06211 1407 aa10.69□□□□□ -0.7
SPT3YDR392W ITT1Q04638 464 aa10.69□□□□□ -0.7
SPT3YDR392W GEA2P39993 1459 aaKnown RBP10.68□□□□□ -0.7
SPT3YDR392W SSK2P53599 1579 aa10.66□□□□□ -0.7
SPT3YDR392W YIL055CP40523 627 aaKnown RBP10.65□□□□□ -0.7
SPT3YDR392W RPO31P04051 1460 aa10.6□□□□□ -0.71
SPT3YDR392W PTP3P40048 928 aa10.59□□□□□ -0.71
SPT3YDR392W UBP9P39967 754 aa10.58□□□□□ -0.72
SPT3YDR392W EPS1P40557 701 aa10.58□□□□□ -0.72
SPT3YDR392W TFA1P36100 482 aa10.57□□□□□ -0.72
SPT3YDR392W BDF1P35817 686 aa10.55□□□□□ -0.72
SPT3YDR392W YOR093CQ12275 1648 aa10.47□□□□□ -0.73
SPT3YDR392W RSM7P47150 247 aa10.46□□□□□ -0.73
SPT3YDR392W DNF2Q12675 1612 aa10.46□□□□□ -0.74
SPT3YDR392W SGS1P35187 1447 aa10.45□□□□□ -0.74
SPT3YDR392W RKR1Q04781 1562 aa10.44□□□□□ -0.74
SPT3YDR392W BBC1P47068 1157 aa10.43□□□□□ -0.74
SPT3YDR392W XRN1P22147 1528 aaKnown RBP10.38□□□□□ -0.75
SPT3YDR392W YAH1Q12184 172 aaKnown RBP10.37□□□□□ -0.75
SPT3YDR392W AI2P03876 854 aa10.36□□□□□ -0.75
SPT3YDR392W SIS1P25294 352 aaKnown RBP10.36□□□□□ -0.75
SPT3YDR392W DRS2P39524 1355 aa10.34□□□□□ -0.75
SPT3YDR392W MST1P07236 462 aa10.32□□□□□ -0.76
SPT3YDR392W YOR238WQ08634 303 aa10.3□□□□□ -0.76
SPT3YDR392W NSR1P27476 414 aaKnown RBP RIP-Chip data10.27□□□□□ -0.77not detected
SPT3YDR392W SKI3P17883 1432 aaKnown RBP10.24□□□□□ -0.77
SPT3YDR392W CHD1P32657 1468 aa10.23□□□□□ -0.77
SPT3YDR392W YLR271WQ06152 274 aa10.21□□□□□ -0.77
SPT3YDR392W YAP5P40574 245 aa10.19□□□□□ -0.78
SPT3YDR392W UFD4P33202 1483 aa10.18□□□□□ -0.78
SPT3YDR392W NTE1Q04958 1679 aa10.15□□□□□ -0.78
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms