RNA–Protein interactions for RNA: YDR254W

CHL4, Transcript of Outer kinetochore protein required for chromosome stability, yeast

Gene CHL4, Length 1,377 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL4	YDR254W	MTC1	P47018	478 aa	Known RBP	16.89	■□□□□ 0.29
CHL4	YDR254W	FAP1	P53971	965 aa		15.75	■□□□□ 0.11
CHL4	YDR254W	DRS1	P32892	752 aa	Known RBP	15.33	■□□□□ 0.04
CHL4	YDR254W	PRY3	P47033	881 aa		14.8	□□□□□ -0.04
CHL4	YDR254W	PRI1	P10363	409 aa		14.49	□□□□□ -0.09
CHL4	YDR254W	AAD16	Q02895	342 aa		14.48	□□□□□ -0.09
CHL4	YDR254W	ISW2	Q08773	1120 aa		14.14	□□□□□ -0.15
CHL4	YDR254W	RPG1	P38249	964 aa	Known RBP	13.98	□□□□□ -0.17
CHL4	YDR254W	HAA1	Q12753	694 aa	Known RBP	13.88	□□□□□ -0.19
CHL4	YDR254W	YCK3	P39962	524 aa		13.87	□□□□□ -0.19
CHL4	YDR254W	TSR3	Q12094	313 aa	Known RBP	13.67	□□□□□ -0.22
CHL4	YDR254W	DIP2	Q12220	943 aa	Predicted RBP	13.61	□□□□□ -0.23
CHL4	YDR254W	RSE1	Q04693	1361 aa	Known RBP	13.3	□□□□□ -0.28
CHL4	YDR254W	MRPL32	P25348	183 aa		13.19	□□□□□ -0.3
CHL4	YDR254W	AVT3	P36062	692 aa		12.96	□□□□□ -0.33
CHL4	YDR254W	REB1	P21538	810 aa		12.91	□□□□□ -0.34
CHL4	YDR254W	RPL17A	P05740	184 aa	Known RBP	12.89	□□□□□ -0.35
CHL4	YDR254W	RPL17B	P46990	184 aa	Known RBP	12.89	□□□□□ -0.35
CHL4	YDR254W	YGL015C	P33199	130 aa		12.78	□□□□□ -0.36
CHL4	YDR254W	BFR2	Q06631	534 aa	Known RBP	12.53	□□□□□ -0.4
CHL4	YDR254W	CDC27	P38042	758 aa		12.38	□□□□□ -0.43
CHL4	YDR254W	SPT21	P35209	758 aa		12.25	□□□□□ -0.45
CHL4	YDR254W	YKR023W	P36119	530 aa	Known RBP	12.24	□□□□□ -0.45
CHL4	YDR254W	UBP10	P53874	792 aa	Predicted RBP	12.12	□□□□□ -0.47
CHL4	YDR254W	MAP2	P38174	421 aa	Known RBP	12.06	□□□□□ -0.48
CHL4	YDR254W	TFC8	Q12308	588 aa		12.01	□□□□□ -0.49
CHL4	YDR254W	HO	P09932	586 aa		12	□□□□□ -0.49
CHL4	YDR254W	DCD1	P06773	312 aa		11.95	□□□□□ -0.5
CHL4	YDR254W	BUD31	P25337	157 aa	Predicted RBP	11.88	□□□□□ -0.51
CHL4	YDR254W	RIM101	P33400	625 aa		11.76	□□□□□ -0.53
CHL4	YDR254W	SCY1	P53009	804 aa		11.76	□□□□□ -0.53
CHL4	YDR254W	TIF4632	P39936	914 aa	Known RBP	11.67	□□□□□ -0.54
CHL4	YDR254W	SLX5	P32828	619 aa	Known RBP	11.65	□□□□□ -0.55
CHL4	YDR254W	TGL3	P40308	642 aa		11.61	□□□□□ -0.55
CHL4	YDR254W	BCH2	P36122	765 aa		11.59	□□□□□ -0.55
CHL4	YDR254W	UBP9	P39967	754 aa		11.43	□□□□□ -0.58
CHL4	YDR254W	OXP1	P28273	1286 aa		11.33	□□□□□ -0.6
CHL4	YDR254W	TFA1	P36100	482 aa		11.31	□□□□□ -0.6
CHL4	YDR254W	SIS1	P25294	352 aa	Known RBP	11.3	□□□□□ -0.6
CHL4	YDR254W	EPS1	P40557	701 aa		11.28	□□□□□ -0.6
CHL4	YDR254W	BDF1	P35817	686 aa		11.25	□□□□□ -0.61
CHL4	YDR254W	YIL055C	P40523	627 aa	Known RBP	11.25	□□□□□ -0.61
CHL4	YDR254W	PTP3	P40048	928 aa		11.23	□□□□□ -0.61
CHL4	YDR254W	BBC1	P47068	1157 aa		11.05	□□□□□ -0.64
CHL4	YDR254W	MST1	P07236	462 aa		11.04	□□□□□ -0.64
CHL4	YDR254W	RSM7	P47150	247 aa		11.04	□□□□□ -0.64
CHL4	YDR254W	YOR238W	Q08634	303 aa		11.03	□□□□□ -0.64
CHL4	YDR254W	AI2	P03876	854 aa		10.97	□□□□□ -0.65
CHL4	YDR254W	YAH1	Q12184	172 aa	Known RBP	10.97	□□□□□ -0.65
CHL4	YDR254W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	10.93	□□□□□ -0.66	not detected
CHL4	YDR254W	YBL029C-A	Q3E756	94 aa		10.93	□□□□□ -0.66
CHL4	YDR254W	YAP5	P40574	245 aa		10.88	□□□□□ -0.67
CHL4	YDR254W	VNX1	P42839	908 aa		10.81	□□□□□ -0.68
CHL4	YDR254W	YLR271W	Q06152	274 aa		10.75	□□□□□ -0.69
CHL4	YDR254W	SPP1	Q03012	353 aa		10.74	□□□□□ -0.69
CHL4	YDR254W	WSC3	Q12215	556 aa		10.73	□□□□□ -0.69
CHL4	YDR254W	GTT3	P39996	337 aa		10.66	□□□□□ -0.7
CHL4	YDR254W	RQC2	Q12532	1038 aa	Known RBP	10.66	□□□□□ -0.7
CHL4	YDR254W	PSD2	P53037	1138 aa	Known RBP	10.64	□□□□□ -0.71
CHL4	YDR254W	TIF11	P38912	153 aa	Known RBP	10.6	□□□□□ -0.71
CHL4	YDR254W	MRM1	P25270	412 aa		10.55	□□□□□ -0.72
CHL4	YDR254W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	10.54	□□□□□ -0.72	not detected
CHL4	YDR254W	PIB1	Q06651	286 aa		10.52	□□□□□ -0.72
CHL4	YDR254W	SSP1	P38871	571 aa		10.52	□□□□□ -0.73
CHL4	YDR254W	YJL171C	P46992	396 aa		10.51	□□□□□ -0.73
CHL4	YDR254W	AIR2	Q12476	344 aa	Known RBP	10.5	□□□□□ -0.73
CHL4	YDR254W	FKH1	P40466	484 aa		10.47	□□□□□ -0.73
CHL4	YDR254W	ULI1	P43604	169 aa		10.46	□□□□□ -0.74
CHL4	YDR254W	TAF7	Q05021	590 aa		10.44	□□□□□ -0.74
CHL4	YDR254W	LDB19	Q12502	818 aa		10.43	□□□□□ -0.74
CHL4	YDR254W	IOC2	Q12072	812 aa		10.4	□□□□□ -0.74
CHL4	YDR254W	MSB4	Q12317	492 aa		10.39	□□□□□ -0.75
CHL4	YDR254W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	10.36	□□□□□ -0.75	not detected
CHL4	YDR254W	EAP1	P36041	632 aa	Known RBP	10.35	□□□□□ -0.75
CHL4	YDR254W	RTG3	P38165	486 aa		10.33	□□□□□ -0.76
CHL4	YDR254W	MGA2	P40578	1113 aa		10.33	□□□□□ -0.76
CHL4	YDR254W	CST9	Q06032	482 aa		10.33	□□□□□ -0.76
CHL4	YDR254W	DBP1	P24784	617 aa	Known RBP	10.31	□□□□□ -0.76
CHL4	YDR254W	VPS29	P38759	282 aa		10.31	□□□□□ -0.76
CHL4	YDR254W	BMT6	Q12291	365 aa		10.31	□□□□□ -0.76
CHL4	YDR254W	YOL036W	Q08206	761 aa		10.28	□□□□□ -0.76
CHL4	YDR254W	SET4	P42948	560 aa		10.27	□□□□□ -0.76
CHL4	YDR254W	YFR006W	P43590	535 aa		10.26	□□□□□ -0.77
CHL4	YDR254W	TRP5	P00931	707 aa	Known RBP	10.24	□□□□□ -0.77
CHL4	YDR254W	RTG1	P32607	177 aa		10.22	□□□□□ -0.77
CHL4	YDR254W	VMA1	P17255	1071 aa	Known RBP	10.21	□□□□□ -0.78
CHL4	YDR254W	STS1	P38637	319 aa		10.2	□□□□□ -0.78
CHL4	YDR254W	NCR1	Q12200	1170 aa		10.18	□□□□□ -0.78
CHL4	YDR254W	SAM3	Q08986	587 aa		10.17	□□□□□ -0.78
CHL4	YDR254W	YNL035C	P53962	389 aa	Known RBP	10.16	□□□□□ -0.78
CHL4	YDR254W	SEC61	P32915	480 aa		10.14	□□□□□ -0.79
CHL4	YDR254W	RCR1	P38212	213 aa		10.12	□□□□□ -0.79
CHL4	YDR254W	TFG1	P41895	735 aa	Predicted RBP	10.07	□□□□□ -0.8
CHL4	YDR254W	ABP1	P15891	592 aa	Known RBP	10.03	□□□□□ -0.8
CHL4	YDR254W	GYP5	Q12344	894 aa		10.03	□□□□□ -0.8
CHL4	YDR254W	JIP4	Q03361	876 aa		10.01	□□□□□ -0.81
CHL4	YDR254W	DAN4	P47179	1161 aa		9.98	□□□□□ -0.81
CHL4	YDR254W	HTA1	P04911	132 aa	Known RBP	9.97	□□□□□ -0.81
CHL4	YDR254W	HTA2	P04912	132 aa		9.97	□□□□□ -0.81
CHL4	YDR254W	DCW1	P36091	449 aa		9.95	□□□□□ -0.82

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms