RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C MTC1P47018 478 aaKnown RBP9.47□□□□□ -0.89
PCF11YDR228C DRS1P32892 752 aaKnown RBP8.91□□□□□ -0.98
PCF11YDR228C FAP1P53971 965 aa8.28□□□□□ -1.08
PCF11YDR228C PRI1P10363 409 aa7.92□□□□□ -1.14
PCF11YDR228C AAD16Q02895 342 aa7.83□□□□□ -1.16
PCF11YDR228C DIP2Q12220 943 aaPredicted RBP7.79□□□□□ -1.16
PCF11YDR228C ISW2Q08773 1120 aa7.79□□□□□ -1.16
PCF11YDR228C PRY3P47033 881 aa7.78□□□□□ -1.16
PCF11YDR228C RPG1P38249 964 aaKnown RBP7.7□□□□□ -1.18
PCF11YDR228C AVT3P36062 692 aa7.6□□□□□ -1.19
PCF11YDR228C RSE1Q04693 1361 aaKnown RBP7.49□□□□□ -1.21
PCF11YDR228C YCK3P39962 524 aa7.47□□□□□ -1.21
PCF11YDR228C BFR2Q06631 534 aaKnown RBP7.47□□□□□ -1.21
PCF11YDR228C TSR3Q12094 313 aaKnown RBP7.44□□□□□ -1.22
PCF11YDR228C HAA1Q12753 694 aaKnown RBP7.37□□□□□ -1.23
PCF11YDR228C RPL17AP05740 184 aaKnown RBP7.23□□□□□ -1.25
PCF11YDR228C RPL17BP46990 184 aaKnown RBP7.23□□□□□ -1.25
PCF11YDR228C REB1P21538 810 aa7.17□□□□□ -1.26
PCF11YDR228C MRPL32P25348 183 aa7.15□□□□□ -1.27
PCF11YDR228C SPT21P35209 758 aa7□□□□□ -1.29
PCF11YDR228C YKR023WP36119 530 aaKnown RBP6.88□□□□□ -1.31
PCF11YDR228C CDC27P38042 758 aa6.85□□□□□ -1.31
PCF11YDR228C YGL015CP33199 130 aa6.85□□□□□ -1.31
PCF11YDR228C RIM101P33400 625 aa6.79□□□□□ -1.32
PCF11YDR228C TFC8Q12308 588 aa6.74□□□□□ -1.33
PCF11YDR228C TFA1P36100 482 aa6.73□□□□□ -1.33
PCF11YDR228C HOP09932 586 aa6.68□□□□□ -1.34
PCF11YDR228C UBP10P53874 792 aaPredicted RBP6.66□□□□□ -1.34
PCF11YDR228C DCD1P06773 312 aa6.64□□□□□ -1.35
PCF11YDR228C MAP2P38174 421 aaKnown RBP6.61□□□□□ -1.35
PCF11YDR228C OXP1P28273 1286 aa6.55□□□□□ -1.36
PCF11YDR228C BCH2P36122 765 aa6.52□□□□□ -1.37
PCF11YDR228C SCY1P53009 804 aa6.48□□□□□ -1.37
PCF11YDR228C SLX5P32828 619 aaKnown RBP6.41□□□□□ -1.38
PCF11YDR228C YIL055CP40523 627 aaKnown RBP6.39□□□□□ -1.39
PCF11YDR228C PTP3P40048 928 aa6.36□□□□□ -1.39
PCF11YDR228C TGL3P40308 642 aa6.36□□□□□ -1.39
PCF11YDR228C TIF4632P39936 914 aaKnown RBP6.34□□□□□ -1.39
PCF11YDR228C EPS1P40557 701 aa6.34□□□□□ -1.39
PCF11YDR228C RSM7P47150 247 aa6.34□□□□□ -1.39
PCF11YDR228C BDF1P35817 686 aa6.33□□□□□ -1.4
PCF11YDR228C YAH1Q12184 172 aaKnown RBP6.29□□□□□ -1.4
PCF11YDR228C YLR271WQ06152 274 aa6.27□□□□□ -1.41
PCF11YDR228C AI2P03876 854 aa6.26□□□□□ -1.41
PCF11YDR228C BUD31P25337 157 aaPredicted RBP6.24□□□□□ -1.41
PCF11YDR228C BBC1P47068 1157 aa6.24□□□□□ -1.41
PCF11YDR228C SSP1P38871 571 aa6.22□□□□□ -1.41
PCF11YDR228C PSD2P53037 1138 aaKnown RBP6.18□□□□□ -1.42
PCF11YDR228C NSR1P27476 414 aaKnown RBP RIP-Chip data6.16□□□□□ -1.42not detected
PCF11YDR228C MST1P07236 462 aa6.15□□□□□ -1.42
PCF11YDR228C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.13□□□□□ -1.43not detected
PCF11YDR228C UBP9P39967 754 aa6.08□□□□□ -1.44
PCF11YDR228C YOR238WQ08634 303 aa6.07□□□□□ -1.44
PCF11YDR228C MGA2P40578 1113 aa6.06□□□□□ -1.44
PCF11YDR228C YAP5P40574 245 aa6.05□□□□□ -1.44
PCF11YDR228C CST9Q06032 482 aa6.05□□□□□ -1.44
PCF11YDR228C MRM1P25270 412 aa6.03□□□□□ -1.44
PCF11YDR228C VPS29P38759 282 aa5.95□□□□□ -1.46
PCF11YDR228C YBL029C-AQ3E756 94 aa5.94□□□□□ -1.46
PCF11YDR228C RTG3P38165 486 aa5.94□□□□□ -1.46
PCF11YDR228C VNX1P42839 908 aa5.92□□□□□ -1.46
PCF11YDR228C YMR1P47147 688 aaKnown RBP RIP-Chip data5.9□□□□□ -1.47not detected
PCF11YDR228C SIS1P25294 352 aaKnown RBP5.89□□□□□ -1.47
PCF11YDR228C RCR1P38212 213 aa5.89□□□□□ -1.47
PCF11YDR228C PIB1Q06651 286 aa5.87□□□□□ -1.47
PCF11YDR228C DBP1P24784 617 aaKnown RBP5.86□□□□□ -1.47
PCF11YDR228C STS1P38637 319 aa5.86□□□□□ -1.47
PCF11YDR228C GTT3P39996 337 aa5.85□□□□□ -1.47
PCF11YDR228C WSC3Q12215 556 aa5.83□□□□□ -1.48
PCF11YDR228C SPP1Q03012 353 aa5.83□□□□□ -1.48
PCF11YDR228C TIF11P38912 153 aaKnown RBP5.82□□□□□ -1.48
PCF11YDR228C YFR006WP43590 535 aa5.81□□□□□ -1.48
PCF11YDR228C VMA1P17255 1071 aaKnown RBP5.81□□□□□ -1.48
PCF11YDR228C SAM3Q08986 587 aa5.81□□□□□ -1.48
PCF11YDR228C MSB4Q12317 492 aa5.8□□□□□ -1.48
PCF11YDR228C IOC2Q12072 812 aa5.78□□□□□ -1.48
PCF11YDR228C RAM2P29703 316 aa5.77□□□□□ -1.49
PCF11YDR228C YOL036WQ08206 761 aa5.77□□□□□ -1.49
PCF11YDR228C ULI1P43604 169 aa5.75□□□□□ -1.49
PCF11YDR228C MAK11P20484 414 aaKnown RBP5.74□□□□□ -1.49
PCF11YDR228C EAP1P36041 632 aaKnown RBP5.74□□□□□ -1.49
PCF11YDR228C FKH1P40466 484 aa5.73□□□□□ -1.49
PCF11YDR228C SET4P42948 560 aa5.73□□□□□ -1.49
PCF11YDR228C AIR2Q12476 344 aaKnown RBP5.73□□□□□ -1.49
PCF11YDR228C LDB19Q12502 818 aa5.72□□□□□ -1.49
PCF11YDR228C TRP5P00931 707 aaKnown RBP5.7□□□□□ -1.5
PCF11YDR228C ABP1P15891 592 aaKnown RBP5.68□□□□□ -1.5
PCF11YDR228C GYP5Q12344 894 aa5.67□□□□□ -1.5
PCF11YDR228C EDS1P38073 919 aa5.66□□□□□ -1.5
PCF11YDR228C COQ8P27697 501 aa5.64□□□□□ -1.51
PCF11YDR228C SEC61P32915 480 aa5.64□□□□□ -1.51
PCF11YDR228C YNL035CP53962 389 aaKnown RBP5.64□□□□□ -1.51
PCF11YDR228C RTG1P32607 177 aa5.63□□□□□ -1.51
PCF11YDR228C PTC3P34221 468 aaKnown RBP5.63□□□□□ -1.51
PCF11YDR228C MIF2P35201 549 aa5.63□□□□□ -1.51
PCF11YDR228C DAN4P47179 1161 aa5.63□□□□□ -1.51
PCF11YDR228C HTA1P04911 132 aaKnown RBP5.62□□□□□ -1.51
PCF11YDR228C HTA2P04912 132 aa5.62□□□□□ -1.51
PCF11YDR228C JIP4Q03361 876 aa5.62□□□□□ -1.51
PCF11YDR228C NOP53Q12080 455 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms