RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU2, Length 672 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU2YDR078C MTC1P47018 478 aaKnown RBP14.85□□□□□ -0.03
SHU2YDR078C FAP1P53971 965 aa14.18□□□□□ -0.14
SHU2YDR078C PRY3P47033 881 aa13.37□□□□□ -0.27
SHU2YDR078C DRS1P32892 752 aaKnown RBP13.1□□□□□ -0.31
SHU2YDR078C AAD16Q02895 342 aa12.94□□□□□ -0.34
SHU2YDR078C PRI1P10363 409 aa12.93□□□□□ -0.34
SHU2YDR078C YCK3P39962 524 aa12.67□□□□□ -0.38
SHU2YDR078C HAA1Q12753 694 aaKnown RBP12.48□□□□□ -0.41
SHU2YDR078C ISW2Q08773 1120 aa12.43□□□□□ -0.42
SHU2YDR078C RPG1P38249 964 aaKnown RBP12.36□□□□□ -0.43
SHU2YDR078C TSR3Q12094 313 aaKnown RBP12.2□□□□□ -0.46
SHU2YDR078C DIP2Q12220 943 aaPredicted RBP11.76□□□□□ -0.53
SHU2YDR078C MRPL32P25348 183 aa11.69□□□□□ -0.54
SHU2YDR078C RSE1Q04693 1361 aaKnown RBP11.56□□□□□ -0.56
SHU2YDR078C YGL015CP33199 130 aa11.4□□□□□ -0.58
SHU2YDR078C RPL17AP05740 184 aaKnown RBP11.27□□□□□ -0.61
SHU2YDR078C RPL17BP46990 184 aaKnown RBP11.27□□□□□ -0.61
SHU2YDR078C REB1P21538 810 aa11.26□□□□□ -0.61
SHU2YDR078C AVT3P36062 692 aa11.13□□□□□ -0.63
SHU2YDR078C CDC27P38042 758 aa11.02□□□□□ -0.65
SHU2YDR078C BUD31P25337 157 aaPredicted RBP10.8□□□□□ -0.68
SHU2YDR078C YKR023WP36119 530 aaKnown RBP10.8□□□□□ -0.68
SHU2YDR078C UBP10P53874 792 aaPredicted RBP10.76□□□□□ -0.69
SHU2YDR078C MAP2P38174 421 aaKnown RBP10.75□□□□□ -0.69
SHU2YDR078C SPT21P35209 758 aa10.74□□□□□ -0.69
SHU2YDR078C HOP09932 586 aa10.58□□□□□ -0.72
SHU2YDR078C TFC8Q12308 588 aa10.57□□□□□ -0.72
SHU2YDR078C DCD1P06773 312 aa10.56□□□□□ -0.72
SHU2YDR078C BFR2Q06631 534 aaKnown RBP10.53□□□□□ -0.72
SHU2YDR078C SCY1P53009 804 aa10.39□□□□□ -0.75
SHU2YDR078C TIF4632P39936 914 aaKnown RBP10.3□□□□□ -0.76
SHU2YDR078C SLX5P32828 619 aaKnown RBP10.28□□□□□ -0.76
SHU2YDR078C TGL3P40308 642 aa10.28□□□□□ -0.76
SHU2YDR078C SIS1P25294 352 aaKnown RBP10.2□□□□□ -0.78
SHU2YDR078C BCH2P36122 765 aa10.2□□□□□ -0.78
SHU2YDR078C RIM101P33400 625 aa10.19□□□□□ -0.78
SHU2YDR078C UBP9P39967 754 aa10.17□□□□□ -0.78
SHU2YDR078C TFA1P36100 482 aa9.95□□□□□ -0.82
SHU2YDR078C EPS1P40557 701 aa9.88□□□□□ -0.83
SHU2YDR078C BDF1P35817 686 aa9.86□□□□□ -0.83
SHU2YDR078C OXP1P28273 1286 aa9.85□□□□□ -0.83
SHU2YDR078C MST1P07236 462 aa9.78□□□□□ -0.84
SHU2YDR078C YBL029C-AQ3E756 94 aa9.75□□□□□ -0.85
SHU2YDR078C YOR238WQ08634 303 aa9.7□□□□□ -0.86
SHU2YDR078C PTP3P40048 928 aa9.68□□□□□ -0.86
SHU2YDR078C YIL055CP40523 627 aaKnown RBP9.65□□□□□ -0.86
SHU2YDR078C NSR1P27476 414 aaKnown RBP RIP-Chip data9.61□□□□□ -0.87not detected
SHU2YDR078C VNX1P42839 908 aa9.61□□□□□ -0.87
SHU2YDR078C BBC1P47068 1157 aa9.54□□□□□ -0.88
SHU2YDR078C RSM7P47150 247 aa9.53□□□□□ -0.88
SHU2YDR078C YAP5P40574 245 aa9.52□□□□□ -0.89
SHU2YDR078C AI2P03876 854 aa9.51□□□□□ -0.89
SHU2YDR078C SPP1Q03012 353 aa9.5□□□□□ -0.89
SHU2YDR078C WSC3Q12215 556 aa9.48□□□□□ -0.89
SHU2YDR078C YAH1Q12184 172 aaKnown RBP9.43□□□□□ -0.9
SHU2YDR078C AIR2Q12476 344 aaKnown RBP9.4□□□□□ -0.9
SHU2YDR078C TIF11P38912 153 aaKnown RBP9.37□□□□□ -0.91
SHU2YDR078C FKH1P40466 484 aa9.36□□□□□ -0.91
SHU2YDR078C GTT3P39996 337 aa9.33□□□□□ -0.92
SHU2YDR078C YJL171CP46992 396 aa9.3□□□□□ -0.92
SHU2YDR078C YLR271WQ06152 274 aa9.26□□□□□ -0.93
SHU2YDR078C PIB1Q06651 286 aa9.24□□□□□ -0.93
SHU2YDR078C LDB19Q12502 818 aa9.23□□□□□ -0.93
SHU2YDR078C ULI1P43604 169 aa9.22□□□□□ -0.93
SHU2YDR078C IOC2Q12072 812 aa9.21□□□□□ -0.94
SHU2YDR078C PSD2P53037 1138 aaKnown RBP9.2□□□□□ -0.94
SHU2YDR078C MRM1P25270 412 aa9.13□□□□□ -0.95
SHU2YDR078C BMT6Q12291 365 aa9.13□□□□□ -0.95
SHU2YDR078C MSB4Q12317 492 aa9.08□□□□□ -0.96
SHU2YDR078C EAP1P36041 632 aaKnown RBP9.03□□□□□ -0.96
SHU2YDR078C YOL036WQ08206 761 aa9.03□□□□□ -0.96
SHU2YDR078C SET4P42948 560 aa9.02□□□□□ -0.97
SHU2YDR078C RTG1P32607 177 aa9.01□□□□□ -0.97
SHU2YDR078C TRP5P00931 707 aaKnown RBP8.99□□□□□ -0.97
SHU2YDR078C VPS29P38759 282 aa8.96□□□□□ -0.98
SHU2YDR078C NCR1Q12200 1170 aa8.96□□□□□ -0.98
SHU2YDR078C DBP1P24784 617 aaKnown RBP8.95□□□□□ -0.98
SHU2YDR078C YMR1P47147 688 aaKnown RBP RIP-Chip data8.95□□□□□ -0.98not detected
SHU2YDR078C SSP1P38871 571 aa8.93□□□□□ -0.98
SHU2YDR078C YFR006WP43590 535 aa8.93□□□□□ -0.98
SHU2YDR078C YNL035CP53962 389 aaKnown RBP8.91□□□□□ -0.98
SHU2YDR078C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.91□□□□□ -0.98not detected
SHU2YDR078C CST9Q06032 482 aa8.9□□□□□ -0.98
SHU2YDR078C VMA1P17255 1071 aaKnown RBP8.89□□□□□ -0.99
SHU2YDR078C SEC61P32915 480 aa8.89□□□□□ -0.99
SHU2YDR078C STS1P38637 319 aa8.89□□□□□ -0.99
SHU2YDR078C RTG3P38165 486 aa8.87□□□□□ -0.99
SHU2YDR078C SAM3Q08986 587 aa8.87□□□□□ -0.99
SHU2YDR078C RQC2Q12532 1038 aaKnown RBP8.85□□□□□ -0.99
SHU2YDR078C MGA2P40578 1113 aa8.78□□□□□ -1
SHU2YDR078C RCR1P38212 213 aa8.77□□□□□ -1.01
SHU2YDR078C DAN4P47179 1161 aa8.77□□□□□ -1.01
SHU2YDR078C TFG1P41895 735 aaPredicted RBP8.76□□□□□ -1.01
SHU2YDR078C SAP30P38429 201 aa8.75□□□□□ -1.01
SHU2YDR078C JIP4Q03361 876 aa8.72□□□□□ -1.01
SHU2YDR078C GYP5Q12344 894 aa8.7□□□□□ -1.02
SHU2YDR078C YDL129WQ07555 291 aa8.69□□□□□ -1.02
SHU2YDR078C ABP1P15891 592 aaKnown RBP8.68□□□□□ -1.02
SHU2YDR078C BCK2P33306 851 aa8.67□□□□□ -1.02
SHU2YDR078C CHL1P22516 861 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms