RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeastyeast

Gene SCM3, Length 672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SCM3YDL139C MTC1P47018 478 aaKnown RBP14.64□□□□□ -0.07
SCM3YDL139C DRS1P32892 752 aaKnown RBP13.98□□□□□ -0.17
SCM3YDL139C FAP1P53971 965 aa12.97□□□□□ -0.33
SCM3YDL139C PRI1P10363 409 aa12.2□□□□□ -0.46
SCM3YDL139C PRY3P47033 881 aa12.17□□□□□ -0.46
SCM3YDL139C DIP2Q12220 943 aaPredicted RBP12.15□□□□□ -0.46
SCM3YDL139C AAD16Q02895 342 aa12.1□□□□□ -0.47
SCM3YDL139C ISW2Q08773 1120 aa12.08□□□□□ -0.48
SCM3YDL139C RPG1P38249 964 aaKnown RBP11.99□□□□□ -0.49
SCM3YDL139C AVT3P36062 692 aa11.75□□□□□ -0.53
SCM3YDL139C BFR2Q06631 534 aaKnown RBP11.75□□□□□ -0.53
SCM3YDL139C RSE1Q04693 1361 aaKnown RBP11.67□□□□□ -0.54
SCM3YDL139C TSR3Q12094 313 aaKnown RBP11.61□□□□□ -0.55
SCM3YDL139C YCK3P39962 524 aa11.46□□□□□ -0.57
SCM3YDL139C HAA1Q12753 694 aaKnown RBP11.36□□□□□ -0.59
SCM3YDL139C RPL17AP05740 184 aaKnown RBP11.32□□□□□ -0.6
SCM3YDL139C RPL17BP46990 184 aaKnown RBP11.32□□□□□ -0.6
SCM3YDL139C REB1P21538 810 aa11.23□□□□□ -0.61
SCM3YDL139C MRPL32P25348 183 aa11.11□□□□□ -0.63
SCM3YDL139C SPT21P35209 758 aa10.78□□□□□ -0.68
SCM3YDL139C TFA1P36100 482 aa10.69□□□□□ -0.7
SCM3YDL139C YKR023WP36119 530 aaKnown RBP10.64□□□□□ -0.71
SCM3YDL139C CDC27P38042 758 aa10.62□□□□□ -0.71
SCM3YDL139C YGL015CP33199 130 aa10.55□□□□□ -0.72
SCM3YDL139C HOP09932 586 aa10.47□□□□□ -0.73
SCM3YDL139C RIM101P33400 625 aa10.47□□□□□ -0.73
SCM3YDL139C DCD1P06773 312 aa10.44□□□□□ -0.74
SCM3YDL139C TFC8Q12308 588 aa10.4□□□□□ -0.74
SCM3YDL139C MAP2P38174 421 aaKnown RBP10.26□□□□□ -0.77
SCM3YDL139C UBP10P53874 792 aaPredicted RBP10.21□□□□□ -0.77
SCM3YDL139C OXP1P28273 1286 aa10.16□□□□□ -0.78
SCM3YDL139C SCY1P53009 804 aa10.11□□□□□ -0.79
SCM3YDL139C BCH2P36122 765 aa10.09□□□□□ -0.79
SCM3YDL139C YIL055CP40523 627 aaKnown RBP10.02□□□□□ -0.81
SCM3YDL139C PTP3P40048 928 aa10.01□□□□□ -0.81
SCM3YDL139C YAH1Q12184 172 aaKnown RBP9.95□□□□□ -0.82
SCM3YDL139C SLX5P32828 619 aaKnown RBP9.93□□□□□ -0.82
SCM3YDL139C EPS1P40557 701 aa9.87□□□□□ -0.83
SCM3YDL139C RSM7P47150 247 aa9.85□□□□□ -0.83
SCM3YDL139C BDF1P35817 686 aa9.81□□□□□ -0.84
SCM3YDL139C TIF4632P39936 914 aaKnown RBP9.81□□□□□ -0.84
SCM3YDL139C AI2P03876 854 aa9.75□□□□□ -0.85
SCM3YDL139C TGL3P40308 642 aa9.75□□□□□ -0.85
SCM3YDL139C YLR271WQ06152 274 aa9.74□□□□□ -0.85
SCM3YDL139C BBC1P47068 1157 aa9.72□□□□□ -0.85
SCM3YDL139C SSP1P38871 571 aa9.67□□□□□ -0.86
SCM3YDL139C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.58□□□□□ -0.88not detected
SCM3YDL139C BUD31P25337 157 aaPredicted RBP9.54□□□□□ -0.88
SCM3YDL139C PSD2P53037 1138 aaKnown RBP9.53□□□□□ -0.88
SCM3YDL139C SGS1P35187 1447 aa9.48□□□□□ -0.89
SCM3YDL139C MRM1P25270 412 aa9.43□□□□□ -0.9
SCM3YDL139C CST9Q06032 482 aa9.42□□□□□ -0.9
SCM3YDL139C MGA2P40578 1113 aa9.39□□□□□ -0.91
SCM3YDL139C UBP9P39967 754 aa9.38□□□□□ -0.91
SCM3YDL139C YOR238WQ08634 303 aa9.38□□□□□ -0.91
SCM3YDL139C NSR1P27476 414 aaKnown RBP RIP-Chip data9.35□□□□□ -0.91not detected
SCM3YDL139C YAP5P40574 245 aa9.35□□□□□ -0.91
SCM3YDL139C TY1B-DR4Q07793 1604 aa9.34□□□□□ -0.91
SCM3YDL139C MST1P07236 462 aa9.34□□□□□ -0.91
SCM3YDL139C MON2P48563 1636 aaPredicted RBP9.31□□□□□ -0.92
SCM3YDL139C PIB1Q06651 286 aa9.27□□□□□ -0.93
SCM3YDL139C YBL029C-AQ3E756 94 aa9.24□□□□□ -0.93
SCM3YDL139C RTG3P38165 486 aa9.21□□□□□ -0.94
SCM3YDL139C INO80P53115 1489 aa9.19□□□□□ -0.94
SCM3YDL139C RCR1P38212 213 aa9.18□□□□□ -0.94
SCM3YDL139C VPS29P38759 282 aa9.18□□□□□ -0.94
SCM3YDL139C TCB3Q03640 1545 aaKnown RBP9.18□□□□□ -0.94
SCM3YDL139C WSC3Q12215 556 aa9.18□□□□□ -0.94
SCM3YDL139C GTT3P39996 337 aa9.17□□□□□ -0.94
SCM3YDL139C RQC2Q12532 1038 aaKnown RBP9.17□□□□□ -0.94
SCM3YDL139C SIS1P25294 352 aaKnown RBP9.16□□□□□ -0.94
SCM3YDL139C YFR006WP43590 535 aa9.14□□□□□ -0.95
SCM3YDL139C YMR1P47147 688 aaKnown RBP RIP-Chip data9.14□□□□□ -0.95not detected
SCM3YDL139C DBP1P24784 617 aaKnown RBP9.12□□□□□ -0.95
SCM3YDL139C VNX1P42839 908 aa9.12□□□□□ -0.95
SCM3YDL139C SWR1Q05471 1514 aa9.11□□□□□ -0.95
SCM3YDL139C HSL1P34244 1518 aa9.1□□□□□ -0.95
SCM3YDL139C SSN2P38931 1420 aa9.08□□□□□ -0.96
SCM3YDL139C STS1P38637 319 aa9.08□□□□□ -0.96
SCM3YDL139C SPP1Q03012 353 aa9.06□□□□□ -0.96
SCM3YDL139C SPA2P23201 1466 aaKnown RBP8.99□□□□□ -0.97
SCM3YDL139C VMA1P17255 1071 aaKnown RBP8.98□□□□□ -0.97
SCM3YDL139C TIF11P38912 153 aaKnown RBP8.98□□□□□ -0.97
SCM3YDL139C SPT6P23615 1451 aaKnown RBP8.97□□□□□ -0.97
SCM3YDL139C RAM2P29703 316 aa8.95□□□□□ -0.98
SCM3YDL139C SET4P42948 560 aa8.94□□□□□ -0.98
SCM3YDL139C YOL036WQ08206 761 aa8.94□□□□□ -0.98
SCM3YDL139C HIR3P47171 1648 aa8.92□□□□□ -0.98
SCM3YDL139C ULI1P43604 169 aa8.92□□□□□ -0.98
SCM3YDL139C DMA1P38823 416 aa8.89□□□□□ -0.99
SCM3YDL139C MSB4Q12317 492 aa8.89□□□□□ -0.99
SCM3YDL139C SAM3Q08986 587 aa8.87□□□□□ -0.99
SCM3YDL139C LDB19Q12502 818 aa8.86□□□□□ -0.99
SCM3YDL139C DNA2P38859 1522 aa8.85□□□□□ -0.99
SCM3YDL139C MAK11P20484 414 aaKnown RBP8.85□□□□□ -0.99
SCM3YDL139C IOC2Q12072 812 aa8.85□□□□□ -0.99
SCM3YDL139C MIF2P35201 549 aa8.83□□□□□ -1
SCM3YDL139C EAP1P36041 632 aaKnown RBP8.83□□□□□ -1
SCM3YDL139C TRP5P00931 707 aaKnown RBP8.82□□□□□ -1
SCM3YDL139C GYP5Q12344 894 aa8.81□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms