RNA–Protein interactions for RNA: YDL111C

RRP42, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP42, Length 798 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP42YDL111C MTC1P47018 478 aaKnown RBP13.63□□□□□ -0.23
RRP42YDL111C FAP1P53971 965 aa13.26□□□□□ -0.29
RRP42YDL111C PRY3P47033 881 aa12.48□□□□□ -0.41
RRP42YDL111C DRS1P32892 752 aaKnown RBP12.05□□□□□ -0.48
RRP42YDL111C AAD16Q02895 342 aa11.94□□□□□ -0.5
RRP42YDL111C PRI1P10363 409 aa11.9□□□□□ -0.5
RRP42YDL111C YCK3P39962 524 aa11.62□□□□□ -0.55
RRP42YDL111C HAA1Q12753 694 aaKnown RBP11.56□□□□□ -0.56
RRP42YDL111C ISW2Q08773 1120 aa11.49□□□□□ -0.57
RRP42YDL111C RPG1P38249 964 aaKnown RBP11.42□□□□□ -0.58
RRP42YDL111C TSR3Q12094 313 aaKnown RBP11.29□□□□□ -0.6
RRP42YDL111C MRPL32P25348 183 aa10.82□□□□□ -0.68
RRP42YDL111C DIP2Q12220 943 aaPredicted RBP10.8□□□□□ -0.68
RRP42YDL111C RSE1Q04693 1361 aaKnown RBP10.65□□□□□ -0.7
RRP42YDL111C YGL015CP33199 130 aa10.54□□□□□ -0.72
RRP42YDL111C REB1P21538 810 aa10.45□□□□□ -0.74
RRP42YDL111C RPL17AP05740 184 aaKnown RBP10.4□□□□□ -0.74
RRP42YDL111C RPL17BP46990 184 aaKnown RBP10.4□□□□□ -0.74
RRP42YDL111C AVT3P36062 692 aa10.14□□□□□ -0.79
RRP42YDL111C CDC27P38042 758 aa10.13□□□□□ -0.79
RRP42YDL111C BUD31P25337 157 aaPredicted RBP9.99□□□□□ -0.81
RRP42YDL111C MAP2P38174 421 aaKnown RBP9.92□□□□□ -0.82
RRP42YDL111C YKR023WP36119 530 aaKnown RBP9.89□□□□□ -0.83
RRP42YDL111C UBP10P53874 792 aaPredicted RBP9.89□□□□□ -0.83
RRP42YDL111C SPT21P35209 758 aa9.8□□□□□ -0.84
RRP42YDL111C DCD1P06773 312 aa9.78□□□□□ -0.84
RRP42YDL111C HOP09932 586 aa9.77□□□□□ -0.85
RRP42YDL111C BFR2Q06631 534 aaKnown RBP9.73□□□□□ -0.85
RRP42YDL111C TFC8Q12308 588 aa9.69□□□□□ -0.86
RRP42YDL111C SCY1P53009 804 aa9.61□□□□□ -0.87
RRP42YDL111C TIF4632P39936 914 aaKnown RBP9.53□□□□□ -0.88
RRP42YDL111C SIS1P25294 352 aaKnown RBP9.51□□□□□ -0.89
RRP42YDL111C SLX5P32828 619 aaKnown RBP9.5□□□□□ -0.89
RRP42YDL111C TGL3P40308 642 aa9.44□□□□□ -0.9
RRP42YDL111C UBP9P39967 754 aa9.43□□□□□ -0.9
RRP42YDL111C BCH2P36122 765 aa9.35□□□□□ -0.91
RRP42YDL111C RIM101P33400 625 aa9.28□□□□□ -0.92
RRP42YDL111C EPS1P40557 701 aa9.09□□□□□ -0.95
RRP42YDL111C BDF1P35817 686 aa9.05□□□□□ -0.96
RRP42YDL111C YBL029C-AQ3E756 94 aa9.03□□□□□ -0.96
RRP42YDL111C OXP1P28273 1286 aa8.97□□□□□ -0.97
RRP42YDL111C PTP3P40048 928 aa8.97□□□□□ -0.97
RRP42YDL111C YOR238WQ08634 303 aa8.93□□□□□ -0.98
RRP42YDL111C YIL055CP40523 627 aaKnown RBP8.91□□□□□ -0.98
RRP42YDL111C MST1P07236 462 aa8.9□□□□□ -0.98
RRP42YDL111C VNX1P42839 908 aa8.84□□□□□ -0.99
RRP42YDL111C WSC3Q12215 556 aa8.82□□□□□ -1
RRP42YDL111C SPP1Q03012 353 aa8.81□□□□□ -1
RRP42YDL111C BBC1P47068 1157 aa8.8□□□□□ -1
RRP42YDL111C YAP5P40574 245 aa8.77□□□□□ -1.01
RRP42YDL111C NSR1P27476 414 aaKnown RBP RIP-Chip data8.74□□□□□ -1.01not detected
RRP42YDL111C AI2P03876 854 aa8.73□□□□□ -1.01
RRP42YDL111C RSM7P47150 247 aa8.73□□□□□ -1.01
RRP42YDL111C YAH1Q12184 172 aaKnown RBP8.73□□□□□ -1.01
RRP42YDL111C GTT3P39996 337 aa8.68□□□□□ -1.02
RRP42YDL111C YJL171CP46992 396 aa8.66□□□□□ -1.02
RRP42YDL111C TIF11P38912 153 aaKnown RBP8.63□□□□□ -1.03
RRP42YDL111C AIR2Q12476 344 aaKnown RBP8.63□□□□□ -1.03
RRP42YDL111C FKH1P40466 484 aa8.6□□□□□ -1.03
RRP42YDL111C PIB1Q06651 286 aa8.57□□□□□ -1.04
RRP42YDL111C TFA1P36100 482 aa8.56□□□□□ -1.04
RRP42YDL111C LDB19Q12502 818 aa8.54□□□□□ -1.04
RRP42YDL111C ULI1P43604 169 aa8.5□□□□□ -1.05
RRP42YDL111C BMT6Q12291 365 aa8.45□□□□□ -1.06
RRP42YDL111C YLR271WQ06152 274 aa8.44□□□□□ -1.06
RRP42YDL111C IOC2Q12072 812 aa8.42□□□□□ -1.06
RRP42YDL111C MRM1P25270 412 aa8.4□□□□□ -1.06
RRP42YDL111C PSD2P53037 1138 aaKnown RBP8.38□□□□□ -1.07
RRP42YDL111C SET4P42948 560 aa8.33□□□□□ -1.08
RRP42YDL111C MSB4Q12317 492 aa8.32□□□□□ -1.08
RRP42YDL111C RTG1P32607 177 aa8.31□□□□□ -1.08
RRP42YDL111C EAP1P36041 632 aaKnown RBP8.31□□□□□ -1.08
RRP42YDL111C YOL036WQ08206 761 aa8.3□□□□□ -1.08
RRP42YDL111C TRP5P00931 707 aaKnown RBP8.27□□□□□ -1.09
RRP42YDL111C NCR1Q12200 1170 aa8.25□□□□□ -1.09
RRP42YDL111C YFR006WP43590 535 aa8.24□□□□□ -1.09
RRP42YDL111C DBP1P24784 617 aaKnown RBP8.22□□□□□ -1.09
RRP42YDL111C YMR1P47147 688 aaKnown RBP RIP-Chip data8.21□□□□□ -1.1not detected
RRP42YDL111C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.19□□□□□ -1.1not detected
RRP42YDL111C YNL035CP53962 389 aaKnown RBP8.18□□□□□ -1.1
RRP42YDL111C VPS29P38759 282 aa8.16□□□□□ -1.1
RRP42YDL111C VMA1P17255 1071 aaKnown RBP8.15□□□□□ -1.1
RRP42YDL111C SEC61P32915 480 aa8.15□□□□□ -1.1
RRP42YDL111C SSP1P38871 571 aa8.15□□□□□ -1.1
RRP42YDL111C STS1P38637 319 aa8.13□□□□□ -1.11
RRP42YDL111C TFG1P41895 735 aaPredicted RBP8.13□□□□□ -1.11
RRP42YDL111C CST9Q06032 482 aa8.13□□□□□ -1.11
RRP42YDL111C RTG3P38165 486 aa8.12□□□□□ -1.11
RRP42YDL111C SAP30P38429 201 aa8.09□□□□□ -1.11
RRP42YDL111C SAM3Q08986 587 aa8.06□□□□□ -1.12
RRP42YDL111C RCR1P38212 213 aa8.02□□□□□ -1.13
RRP42YDL111C MGA2P40578 1113 aa8.01□□□□□ -1.13
RRP42YDL111C BCK2P33306 851 aa8□□□□□ -1.13
RRP42YDL111C GYP5Q12344 894 aa8□□□□□ -1.13
RRP42YDL111C DAN4P47179 1161 aa7.99□□□□□ -1.13
RRP42YDL111C DCW1P36091 449 aa7.98□□□□□ -1.13
RRP42YDL111C JIP4Q03361 876 aa7.98□□□□□ -1.13
RRP42YDL111C YDL129WQ07555 291 aa7.98□□□□□ -1.13
RRP42YDL111C HTA1P04911 132 aaKnown RBP7.96□□□□□ -1.14
RRP42YDL111C HTA2P04912 132 aa7.96□□□□□ -1.14
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms