RNA–Protein interactions for RNA: YDL074C

BRE1, Transcript of E3 ubiquitin ligase, yeastyeast

Gene BRE1, Length 2,103 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
BRE1YDL074C FAP1P53971 965 aa7.21□□□□□ -1.26
BRE1YDL074C PRY3P47033 881 aa6.85□□□□□ -1.31
BRE1YDL074C HAA1Q12753 694 aaKnown RBP6.38□□□□□ -1.39
BRE1YDL074C YCK3P39962 524 aa6.14□□□□□ -1.43
BRE1YDL074C BUD31P25337 157 aaPredicted RBP6.09□□□□□ -1.43
BRE1YDL074C AAD16Q02895 342 aa5.74□□□□□ -1.49
BRE1YDL074C SIS1P25294 352 aaKnown RBP5.62□□□□□ -1.51
BRE1YDL074C YGL015CP33199 130 aa5.44□□□□□ -1.54
BRE1YDL074C PRI1P10363 409 aa5.37□□□□□ -1.55
BRE1YDL074C UBP9P39967 754 aa5.05□□□□□ -1.6
BRE1YDL074C MTC1P47018 478 aaKnown RBP5.04□□□□□ -1.6
BRE1YDL074C RGA2Q06407 1009 aa4.99□□□□□ -1.61
BRE1YDL074C TSR3Q12094 313 aaKnown RBP4.9□□□□□ -1.63
BRE1YDL074C MRPL32P25348 183 aa4.87□□□□□ -1.63
BRE1YDL074C ISW2Q08773 1120 aa4.52□□□□□ -1.69
BRE1YDL074C RPG1P38249 964 aaKnown RBP4.43□□□□□ -1.7
BRE1YDL074C UBP10P53874 792 aaPredicted RBP4.37□□□□□ -1.71
BRE1YDL074C YJL171CP46992 396 aa4.37□□□□□ -1.71
BRE1YDL074C RGA1P39083 1007 aa4.36□□□□□ -1.71
BRE1YDL074C TIF4632P39936 914 aaKnown RBP4.3□□□□□ -1.72
BRE1YDL074C TGL3P40308 642 aa4.26□□□□□ -1.73
BRE1YDL074C MAP2P38174 421 aaKnown RBP4.18□□□□□ -1.74
BRE1YDL074C AIR2Q12476 344 aaKnown RBP4.09□□□□□ -1.76
BRE1YDL074C YBL029C-AQ3E756 94 aa4.01□□□□□ -1.77
BRE1YDL074C BMT6Q12291 365 aa4□□□□□ -1.77
BRE1YDL074C FKH1P40466 484 aa3.97□□□□□ -1.77
BRE1YDL074C CDC27P38042 758 aa3.94□□□□□ -1.78
BRE1YDL074C SPP1Q03012 353 aa3.91□□□□□ -1.78
BRE1YDL074C VNX1P42839 908 aa3.89□□□□□ -1.79
BRE1YDL074C SLX5P32828 619 aaKnown RBP3.85□□□□□ -1.79
BRE1YDL074C DRS1P32892 752 aaKnown RBP3.83□□□□□ -1.8
BRE1YDL074C RSE1Q04693 1361 aaKnown RBP3.79□□□□□ -1.8
BRE1YDL074C REB1P21538 810 aa3.79□□□□□ -1.8
BRE1YDL074C BCK2P33306 851 aa3.75□□□□□ -1.81
BRE1YDL074C RPL17AP05740 184 aaKnown RBP3.73□□□□□ -1.81
BRE1YDL074C RPL17BP46990 184 aaKnown RBP3.73□□□□□ -1.81
BRE1YDL074C SCY1P53009 804 aa3.72□□□□□ -1.81
BRE1YDL074C MST1P07236 462 aa3.7□□□□□ -1.82
BRE1YDL074C YKR023WP36119 530 aaKnown RBP3.69□□□□□ -1.82
BRE1YDL074C DIP2Q12220 943 aaPredicted RBP3.68□□□□□ -1.82
BRE1YDL074C TIF11P38912 153 aaKnown RBP3.67□□□□□ -1.82
BRE1YDL074C DCD1P06773 312 aa3.62□□□□□ -1.83
BRE1YDL074C SGS1P35187 1447 aa3.61□□□□□ -1.83
BRE1YDL074C YOR238WQ08634 303 aa3.61□□□□□ -1.83
BRE1YDL074C HOP09932 586 aa3.61□□□□□ -1.83
BRE1YDL074C TFC8Q12308 588 aa3.61□□□□□ -1.83
BRE1YDL074C INO80P53115 1489 aa3.6□□□□□ -1.83
BRE1YDL074C LDB19Q12502 818 aa3.58□□□□□ -1.84
BRE1YDL074C WSC3Q12215 556 aa3.57□□□□□ -1.84
BRE1YDL074C SPT21P35209 758 aa3.53□□□□□ -1.84
BRE1YDL074C DPS1P04802 557 aaKnown RBP3.53□□□□□ -1.84
BRE1YDL074C SPA2P23201 1466 aaKnown RBP3.53□□□□□ -1.84
BRE1YDL074C TCB3Q03640 1545 aaKnown RBP3.53□□□□□ -1.84
BRE1YDL074C XDJ1P39102 459 aa3.48□□□□□ -1.85
BRE1YDL074C YPL062WQ02781 134 aa3.47□□□□□ -1.85
BRE1YDL074C BCH2P36122 765 aa3.46□□□□□ -1.86
BRE1YDL074C SSN2P38931 1420 aa3.45□□□□□ -1.86
BRE1YDL074C TY1B-DR4Q07793 1604 aa3.44□□□□□ -1.86
BRE1YDL074C ULI1P43604 169 aa3.43□□□□□ -1.86
BRE1YDL074C AVT3P36062 692 aa3.41□□□□□ -1.86
BRE1YDL074C NCR1Q12200 1170 aa3.41□□□□□ -1.86
BRE1YDL074C MON2P48563 1636 aaPredicted RBP3.4□□□□□ -1.87
BRE1YDL074C IOC2Q12072 812 aa3.4□□□□□ -1.87
BRE1YDL074C CHL1P22516 861 aaPredicted RBP3.38□□□□□ -1.87
BRE1YDL074C SPT6P23615 1451 aaKnown RBP3.38□□□□□ -1.87
BRE1YDL074C HSL1P34244 1518 aa3.37□□□□□ -1.87
BRE1YDL074C SRC1Q03707 834 aa3.35□□□□□ -1.87
BRE1YDL074C SWR1Q05471 1514 aa3.34□□□□□ -1.88
BRE1YDL074C NSR1P27476 414 aaKnown RBP RIP-Chip data3.32□□□□□ -1.88not detected
BRE1YDL074C HIR3P47171 1648 aa3.32□□□□□ -1.88
BRE1YDL074C BDF1P35817 686 aa3.32□□□□□ -1.88
BRE1YDL074C EPS1P40557 701 aa3.31□□□□□ -1.88
BRE1YDL074C XRN1P22147 1528 aaKnown RBP3.3□□□□□ -1.88
BRE1YDL074C THO2P53552 1597 aaKnown RBP3.29□□□□□ -1.88
BRE1YDL074C RTG1P32607 177 aa3.29□□□□□ -1.88
BRE1YDL074C GTT3P39996 337 aa3.28□□□□□ -1.88
BRE1YDL074C YAP5P40574 245 aa3.28□□□□□ -1.89
BRE1YDL074C KOG1P38873 1557 aa3.27□□□□□ -1.89
BRE1YDL074C SIN3P22579 1536 aa3.27□□□□□ -1.89
BRE1YDL074C REV3P14284 1504 aa3.27□□□□□ -1.89
BRE1YDL074C MYO2P19524 1574 aaKnown RBP3.25□□□□□ -1.89
BRE1YDL074C VRP1P37370 817 aa3.24□□□□□ -1.89
BRE1YDL074C TFG1P41895 735 aaPredicted RBP3.24□□□□□ -1.89
BRE1YDL074C SSK2P53599 1579 aa3.23□□□□□ -1.89
BRE1YDL074C TAF2P23255 1407 aa3.23□□□□□ -1.89
BRE1YDL074C SEC61P32915 480 aa3.22□□□□□ -1.89
BRE1YDL074C PRE3P38624 215 aa3.22□□□□□ -1.89
BRE1YDL074C BUD4P47136 1447 aa3.22□□□□□ -1.89
BRE1YDL074C ESP1Q03018 1630 aa3.22□□□□□ -1.89
BRE1YDL074C DNA2P38859 1522 aa3.21□□□□□ -1.9
BRE1YDL074C RIM101P33400 625 aa3.2□□□□□ -1.9
BRE1YDL074C EAP1P36041 632 aaKnown RBP3.2□□□□□ -1.9
BRE1YDL074C SKI3P17883 1432 aaKnown RBP3.19□□□□□ -1.9
BRE1YDL074C CHD1P32657 1468 aa3.18□□□□□ -1.9
BRE1YDL074C YTA7P40340 1379 aa3.17□□□□□ -1.9
BRE1YDL074C ECM5Q03214 1411 aa3.17□□□□□ -1.9
BRE1YDL074C ATG2P53855 1592 aa3.17□□□□□ -1.9
BRE1YDL074C YPK9Q12697 1472 aa3.16□□□□□ -1.9
BRE1YDL074C POL1P13382 1468 aa3.16□□□□□ -1.9
BRE1YDL074C TAF7Q05021 590 aa3.14□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 47.5 ms