RNA–Protein interactions for RNA: YDL003W

MCD1, Transcript of Essential alpha-kleisin subunit of the cohesin complex, yeastyeast

Gene MCD1, Length 1,701 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MCD1YDL003W MTC1P47018 478 aaKnown RBP10.52□□□□□ -0.73
MCD1YDL003W FAP1P53971 965 aa10.06□□□□□ -0.8
MCD1YDL003W DRS1P32892 752 aaKnown RBP9.48□□□□□ -0.89
MCD1YDL003W PRY3P47033 881 aa9.43□□□□□ -0.9
MCD1YDL003W AAD16Q02895 342 aa9.14□□□□□ -0.95
MCD1YDL003W PRI1P10363 409 aa9.1□□□□□ -0.95
MCD1YDL003W ISW2Q08773 1120 aa8.89□□□□□ -0.99
MCD1YDL003W HAA1Q12753 694 aaKnown RBP8.82□□□□□ -1
MCD1YDL003W RPG1P38249 964 aaKnown RBP8.79□□□□□ -1
MCD1YDL003W YCK3P39962 524 aa8.72□□□□□ -1.01
MCD1YDL003W TSR3Q12094 313 aaKnown RBP8.62□□□□□ -1.03
MCD1YDL003W DIP2Q12220 943 aaPredicted RBP8.46□□□□□ -1.06
MCD1YDL003W MRPL32P25348 183 aa8.34□□□□□ -1.07
MCD1YDL003W RSE1Q04693 1361 aaKnown RBP8.3□□□□□ -1.08
MCD1YDL003W REB1P21538 810 aa8.11□□□□□ -1.11
MCD1YDL003W YGL015CP33199 130 aa8.1□□□□□ -1.11
MCD1YDL003W RPL17AP05740 184 aaKnown RBP8.06□□□□□ -1.12
MCD1YDL003W RPL17BP46990 184 aaKnown RBP8.06□□□□□ -1.12
MCD1YDL003W AVT3P36062 692 aa7.95□□□□□ -1.14
MCD1YDL003W CDC27P38042 758 aa7.74□□□□□ -1.17
MCD1YDL003W BFR2Q06631 534 aaKnown RBP7.69□□□□□ -1.18
MCD1YDL003W YKR023WP36119 530 aaKnown RBP7.62□□□□□ -1.19
MCD1YDL003W UBP10P53874 792 aaPredicted RBP7.6□□□□□ -1.19
MCD1YDL003W MAP2P38174 421 aaKnown RBP7.58□□□□□ -1.2
MCD1YDL003W SPT21P35209 758 aa7.57□□□□□ -1.2
MCD1YDL003W BUD31P25337 157 aaPredicted RBP7.54□□□□□ -1.2
MCD1YDL003W HOP09932 586 aa7.52□□□□□ -1.21
MCD1YDL003W TFC8Q12308 588 aa7.48□□□□□ -1.21
MCD1YDL003W DCD1P06773 312 aa7.47□□□□□ -1.21
MCD1YDL003W TIF4632P39936 914 aaKnown RBP7.38□□□□□ -1.23
MCD1YDL003W SCY1P53009 804 aa7.38□□□□□ -1.23
MCD1YDL003W SLX5P32828 619 aaKnown RBP7.32□□□□□ -1.24
MCD1YDL003W TGL3P40308 642 aa7.3□□□□□ -1.24
MCD1YDL003W UBP9P39967 754 aa7.27□□□□□ -1.25
MCD1YDL003W RIM101P33400 625 aa7.27□□□□□ -1.25
MCD1YDL003W SIS1P25294 352 aaKnown RBP7.24□□□□□ -1.25
MCD1YDL003W BCH2P36122 765 aa7.22□□□□□ -1.25
MCD1YDL003W YIL055CP40523 627 aaKnown RBP7.03□□□□□ -1.28
MCD1YDL003W EPS1P40557 701 aa7.03□□□□□ -1.28
MCD1YDL003W PTP3P40048 928 aa7.01□□□□□ -1.29
MCD1YDL003W BDF1P35817 686 aa7□□□□□ -1.29
MCD1YDL003W OXP1P28273 1286 aa6.99□□□□□ -1.29
MCD1YDL003W YOR238WQ08634 303 aa6.93□□□□□ -1.3
MCD1YDL003W BBC1P47068 1157 aa6.9□□□□□ -1.3
MCD1YDL003W YBL029C-AQ3E756 94 aa6.89□□□□□ -1.31
MCD1YDL003W MST1P07236 462 aa6.88□□□□□ -1.31
MCD1YDL003W RSM7P47150 247 aa6.85□□□□□ -1.31
MCD1YDL003W YAH1Q12184 172 aaKnown RBP6.83□□□□□ -1.32
MCD1YDL003W AI2P03876 854 aa6.81□□□□□ -1.32
MCD1YDL003W YAP5P40574 245 aa6.81□□□□□ -1.32
MCD1YDL003W VNX1P42839 908 aa6.79□□□□□ -1.32
MCD1YDL003W SPP1Q03012 353 aa6.79□□□□□ -1.32
MCD1YDL003W NSR1P27476 414 aaKnown RBP RIP-Chip data6.78□□□□□ -1.32not detected
MCD1YDL003W WSC3Q12215 556 aa6.78□□□□□ -1.32
MCD1YDL003W GTT3P39996 337 aa6.73□□□□□ -1.33
MCD1YDL003W YJL171CP46992 396 aa6.69□□□□□ -1.34
MCD1YDL003W TFA1P36100 482 aa6.67□□□□□ -1.34
MCD1YDL003W TIF11P38912 153 aaKnown RBP6.66□□□□□ -1.34
MCD1YDL003W YLR271WQ06152 274 aa6.62□□□□□ -1.35
MCD1YDL003W PIB1Q06651 286 aa6.59□□□□□ -1.35
MCD1YDL003W AIR2Q12476 344 aaKnown RBP6.59□□□□□ -1.35
MCD1YDL003W ULI1P43604 169 aa6.58□□□□□ -1.36
MCD1YDL003W LDB19Q12502 818 aa6.56□□□□□ -1.36
MCD1YDL003W MRM1P25270 412 aa6.56□□□□□ -1.36
MCD1YDL003W FKH1P40466 484 aa6.56□□□□□ -1.36
MCD1YDL003W PSD2P53037 1138 aaKnown RBP6.54□□□□□ -1.36
MCD1YDL003W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.53□□□□□ -1.36not detected
MCD1YDL003W BMT6Q12291 365 aa6.51□□□□□ -1.37
MCD1YDL003W IOC2Q12072 812 aa6.5□□□□□ -1.37
MCD1YDL003W EAP1P36041 632 aaKnown RBP6.49□□□□□ -1.37
MCD1YDL003W MSB4Q12317 492 aa6.47□□□□□ -1.37
MCD1YDL003W SSP1P38871 571 aa6.46□□□□□ -1.38
MCD1YDL003W SET4P42948 560 aa6.44□□□□□ -1.38
MCD1YDL003W YMR1P47147 688 aaKnown RBP RIP-Chip data6.43□□□□□ -1.38not detected
MCD1YDL003W RTG1P32607 177 aa6.42□□□□□ -1.38
MCD1YDL003W NCR1Q12200 1170 aa6.42□□□□□ -1.38
MCD1YDL003W DBP1P24784 617 aaKnown RBP6.41□□□□□ -1.38
MCD1YDL003W YOL036WQ08206 761 aa6.41□□□□□ -1.38
MCD1YDL003W TRP5P00931 707 aaKnown RBP6.4□□□□□ -1.38
MCD1YDL003W RTG3P38165 486 aa6.4□□□□□ -1.38
MCD1YDL003W YFR006WP43590 535 aa6.39□□□□□ -1.39
MCD1YDL003W TFG1P41895 735 aaPredicted RBP6.37□□□□□ -1.39
MCD1YDL003W VPS29P38759 282 aa6.36□□□□□ -1.39
MCD1YDL003W YNL035CP53962 389 aaKnown RBP6.36□□□□□ -1.39
MCD1YDL003W MGA2P40578 1113 aa6.36□□□□□ -1.39
MCD1YDL003W CST9Q06032 482 aa6.35□□□□□ -1.39
MCD1YDL003W SEC61P32915 480 aa6.34□□□□□ -1.39
MCD1YDL003W VMA1P17255 1071 aaKnown RBP6.33□□□□□ -1.4
MCD1YDL003W STS1P38637 319 aa6.3□□□□□ -1.4
MCD1YDL003W SAM3Q08986 587 aa6.29□□□□□ -1.4
MCD1YDL003W GYP5Q12344 894 aa6.26□□□□□ -1.41
MCD1YDL003W SAP30P38429 201 aa6.25□□□□□ -1.41
MCD1YDL003W JIP4Q03361 876 aa6.25□□□□□ -1.41
MCD1YDL003W ABP1P15891 592 aaKnown RBP6.24□□□□□ -1.41
MCD1YDL003W RCR1P38212 213 aa6.22□□□□□ -1.41
MCD1YDL003W HTA1P04911 132 aaKnown RBP6.22□□□□□ -1.41
MCD1YDL003W HTA2P04912 132 aa6.22□□□□□ -1.41
MCD1YDL003W DCW1P36091 449 aa6.22□□□□□ -1.41
MCD1YDL003W DAN4P47179 1161 aa6.19□□□□□ -1.42
MCD1YDL003W YDL129WQ07555 291 aa6.19□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 8.3 ms