RNA–Protein interactions for RNA: YCR088W

ABP1, Transcript of Actin-binding protein of the cortical actin cytoskeleton, yeastyeast

Gene ABP1, Length 1,779 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ABP1YCR088W SGS1P35187 1447 aa13.63□□□□□ -0.23
ABP1YCR088W SPA2P23201 1466 aaKnown RBP13.26□□□□□ -0.29
ABP1YCR088W SSN2P38931 1420 aa13.19□□□□□ -0.3
ABP1YCR088W INO80P53115 1489 aa13.19□□□□□ -0.3
ABP1YCR088W TCB3Q03640 1545 aaKnown RBP12.92□□□□□ -0.34
ABP1YCR088W TY1B-DR4Q07793 1604 aa12.81□□□□□ -0.36
ABP1YCR088W DRS1P32892 752 aaKnown RBP12.74□□□□□ -0.37
ABP1YCR088W HSL1P34244 1518 aa12.64□□□□□ -0.39
ABP1YCR088W SPT6P23615 1451 aaKnown RBP12.57□□□□□ -0.4
ABP1YCR088W MTC1P47018 478 aaKnown RBP12.49□□□□□ -0.41
ABP1YCR088W HIR3P47171 1648 aa12.44□□□□□ -0.42
ABP1YCR088W MON2P48563 1636 aaPredicted RBP12.43□□□□□ -0.42
ABP1YCR088W XRN1P22147 1528 aaKnown RBP12.4□□□□□ -0.42
ABP1YCR088W SWR1Q05471 1514 aa12.37□□□□□ -0.43
ABP1YCR088W REV3P14284 1504 aa12.25□□□□□ -0.45
ABP1YCR088W THO2P53552 1597 aaKnown RBP12.16□□□□□ -0.46
ABP1YCR088W SIN3P22579 1536 aa12.16□□□□□ -0.46
ABP1YCR088W SSK2P53599 1579 aa12.13□□□□□ -0.47
ABP1YCR088W TAF2P23255 1407 aa12.12□□□□□ -0.47
ABP1YCR088W SKI3P17883 1432 aaKnown RBP12.06□□□□□ -0.48
ABP1YCR088W ESP1Q03018 1630 aa12.01□□□□□ -0.49
ABP1YCR088W MMS22Q06164 1454 aa11.98□□□□□ -0.49
ABP1YCR088W CHD1P32657 1468 aa11.97□□□□□ -0.49
ABP1YCR088W MYO2P19524 1574 aaKnown RBP11.94□□□□□ -0.5
ABP1YCR088W ATG2P53855 1592 aa11.86□□□□□ -0.51
ABP1YCR088W DNA2P38859 1522 aa11.86□□□□□ -0.51
ABP1YCR088W STU1P38198 1513 aa11.85□□□□□ -0.51
ABP1YCR088W POL1P13382 1468 aa11.85□□□□□ -0.51
ABP1YCR088W BUD4P47136 1447 aa11.83□□□□□ -0.52
ABP1YCR088W KOG1P38873 1557 aa11.8□□□□□ -0.52
ABP1YCR088W BPT1P14772 1559 aa11.78□□□□□ -0.52
ABP1YCR088W YPK9Q12697 1472 aa11.78□□□□□ -0.52
ABP1YCR088W ECM5Q03214 1411 aa11.77□□□□□ -0.53
ABP1YCR088W YTA7P40340 1379 aa11.71□□□□□ -0.53
ABP1YCR088W RSE1Q04693 1361 aaKnown RBP11.7□□□□□ -0.54
ABP1YCR088W RKR1Q04781 1562 aa11.69□□□□□ -0.54
ABP1YCR088W SAS10Q12136 610 aaPredicted RBP11.69□□□□□ -0.54
ABP1YCR088W PEP1P32319 1579 aa11.68□□□□□ -0.54
ABP1YCR088W SCC2Q04002 1493 aa11.67□□□□□ -0.54
ABP1YCR088W YOR1P53049 1477 aa11.65□□□□□ -0.54
ABP1YCR088W MDS3P53094 1487 aa11.61□□□□□ -0.55
ABP1YCR088W TRM732Q03496 1420 aa11.59□□□□□ -0.55
ABP1YCR088W UFD4P33202 1483 aa11.59□□□□□ -0.55
ABP1YCR088W RPO31P04051 1460 aa11.59□□□□□ -0.55
ABP1YCR088W MYO4P32492 1471 aa11.57□□□□□ -0.56
ABP1YCR088W TOP2P06786 1428 aaKnown RBP11.53□□□□□ -0.56
ABP1YCR088W TY2B-LR1P0C2J3 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-FP0CX63 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-GR2P0CX64 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-CP25384 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-DR2Q03494 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY1B-DR1Q03855 1755 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-DR3Q07791 1770 aaKnown RBP11.53□□□□□ -0.56
ABP1YCR088W TY2B-OR1Q12113 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-DR1Q12472 1770 aa11.53□□□□□ -0.56
ABP1YCR088W TY2B-OR2Q12501 1770 aa11.53□□□□□ -0.56
ABP1YCR088W YCF1P39109 1515 aaKnown RBP11.52□□□□□ -0.56
ABP1YCR088W TY1B-DR3Q99231 1755 aa11.52□□□□□ -0.57
ABP1YCR088W SMC4Q12267 1418 aa11.51□□□□□ -0.57
ABP1YCR088W SNQ2P32568 1501 aaKnown RBP11.48□□□□□ -0.57
ABP1YCR088W IKI3Q06706 1349 aaKnown RBP11.47□□□□□ -0.57
ABP1YCR088W TY2B-BQ12491 1770 aa11.43□□□□□ -0.58
ABP1YCR088W STH1P32597 1359 aa11.43□□□□□ -0.58
ABP1YCR088W MLP2P40457 1679 aa11.41□□□□□ -0.58
ABP1YCR088W NUP170P38181 1502 aa11.37□□□□□ -0.59
ABP1YCR088W SSM4P40318 1319 aa11.37□□□□□ -0.59
ABP1YCR088W PDR15Q04182 1529 aaKnown RBP11.36□□□□□ -0.59
ABP1YCR088W TAF7Q05021 590 aa11.34□□□□□ -0.59
ABP1YCR088W ULS1Q08562 1619 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-HO13535 1793 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-DR5P0C2I2 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-DR6P0C2I3 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-LR2P0C2I5 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-LR3P0C2I6 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W TY1B-PR1P0C2I9 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W TY1B-PR2P0C2J0 1756 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-PR3P0C2J1 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W TY1B-JR1P47098 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-ML2Q03434 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W TY1B-ER1Q03612 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-ML1Q04711 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W TY1B-GR2Q12269 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-OLQ12273 1755 aa11.33□□□□□ -0.6
ABP1YCR088W TY1B-PLQ12414 1755 aaKnown RBP11.33□□□□□ -0.6
ABP1YCR088W IFH1P39520 1085 aa11.31□□□□□ -0.6
ABP1YCR088W GEA1P47102 1408 aaPredicted RBP11.31□□□□□ -0.6
ABP1YCR088W TY1B-BRQ12193 1756 aa11.3□□□□□ -0.6
ABP1YCR088W TY1B-GR3Q12316 1755 aa11.3□□□□□ -0.6
ABP1YCR088W TY1B-ORQ92393 1755 aa11.3□□□□□ -0.6
ABP1YCR088W SPP41P38904 1435 aa11.27□□□□□ -0.6
ABP1YCR088W TY3B-GQ99315 1547 aa11.23□□□□□ -0.61
ABP1YCR088W TSC11P40061 1430 aa11.21□□□□□ -0.62
ABP1YCR088W NSR1P27476 414 aaKnown RBP RIP-Chip data11.21□□□□□ -0.62not detected
ABP1YCR088W VTH1P40438 1549 aa11.2□□□□□ -0.62
ABP1YCR088W VTH2P40890 1549 aa11.2□□□□□ -0.62
ABP1YCR088W RQC2Q12532 1038 aaKnown RBP11.2□□□□□ -0.62
ABP1YCR088W TY1B-JR2P47100 1755 aaKnown RBP11.16□□□□□ -0.62
ABP1YCR088W TY1B-ER2Q03619 1755 aa11.16□□□□□ -0.62
ABP1YCR088W TY1B-MR1Q04214 1755 aa11.16□□□□□ -0.62
ABP1YCR088W TY1B-MR2Q04670 1755 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms