RNA–Protein interactions for RNA: YBR228W

SLX1, Transcript of Endonuclease involved in DNA recombination and repair, yeast

Gene SLX1, Length 915 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SLX1	YBR228W	MTC1	P47018	478 aa	Known RBP	19.01	■□□□□ 0.63
SLX1	YBR228W	DRS1	P32892	752 aa	Known RBP	18.09	■□□□□ 0.49
SLX1	YBR228W	FAP1	P53971	965 aa		16.97	■□□□□ 0.31
SLX1	YBR228W	PRY3	P47033	881 aa		15.91	■□□□□ 0.14
SLX1	YBR228W	PRI1	P10363	409 aa		15.87	■□□□□ 0.13
SLX1	YBR228W	AAD16	Q02895	342 aa		15.76	■□□□□ 0.11
SLX1	YBR228W	ISW2	Q08773	1120 aa		15.75	■□□□□ 0.11
SLX1	YBR228W	DIP2	Q12220	943 aa	Predicted RBP	15.73	■□□□□ 0.11
SLX1	YBR228W	RPG1	P38249	964 aa	Known RBP	15.58	■□□□□ 0.08
SLX1	YBR228W	AVT3	P36062	692 aa		15.17	■□□□□ 0.02
SLX1	YBR228W	BFR2	Q06631	534 aa	Known RBP	15.17	■□□□□ 0.02
SLX1	YBR228W	RSE1	Q04693	1361 aa	Known RBP	15.14	■□□□□ 0.01
SLX1	YBR228W	TSR3	Q12094	313 aa	Known RBP	15.08	■□□□□ 0
SLX1	YBR228W	YCK3	P39962	524 aa		14.85	□□□□□ -0.03
SLX1	YBR228W	HAA1	Q12753	694 aa	Known RBP	14.85	□□□□□ -0.03
SLX1	YBR228W	RPL17A	P05740	184 aa	Known RBP	14.67	□□□□□ -0.06
SLX1	YBR228W	RPL17B	P46990	184 aa	Known RBP	14.67	□□□□□ -0.06
SLX1	YBR228W	REB1	P21538	810 aa		14.62	□□□□□ -0.07
SLX1	YBR228W	MRPL32	P25348	183 aa		14.49	□□□□□ -0.09
SLX1	YBR228W	SPT21	P35209	758 aa		13.96	□□□□□ -0.17
SLX1	YBR228W	YGL015C	P33199	130 aa		13.78	□□□□□ -0.2
SLX1	YBR228W	YKR023W	P36119	530 aa	Known RBP	13.76	□□□□□ -0.21
SLX1	YBR228W	CDC27	P38042	758 aa		13.76	□□□□□ -0.21
SLX1	YBR228W	HO	P09932	586 aa		13.56	□□□□□ -0.24
SLX1	YBR228W	DCD1	P06773	312 aa		13.51	□□□□□ -0.25
SLX1	YBR228W	RIM101	P33400	625 aa		13.51	□□□□□ -0.25
SLX1	YBR228W	TFC8	Q12308	588 aa		13.49	□□□□□ -0.25
SLX1	YBR228W	TFA1	P36100	482 aa		13.41	□□□□□ -0.26
SLX1	YBR228W	MAP2	P38174	421 aa	Known RBP	13.33	□□□□□ -0.28
SLX1	YBR228W	UBP10	P53874	792 aa	Predicted RBP	13.32	□□□□□ -0.28
SLX1	YBR228W	SCY1	P53009	804 aa		13.14	□□□□□ -0.31
SLX1	YBR228W	OXP1	P28273	1286 aa		13.08	□□□□□ -0.32
SLX1	YBR228W	BCH2	P36122	765 aa		13.07	□□□□□ -0.32
SLX1	YBR228W	PTP3	P40048	928 aa		13.01	□□□□□ -0.33
SLX1	YBR228W	YIL055C	P40523	627 aa	Known RBP	13	□□□□□ -0.33
SLX1	YBR228W	SLX5	P32828	619 aa	Known RBP	12.93	□□□□□ -0.34
SLX1	YBR228W	YAH1	Q12184	172 aa	Known RBP	12.87	□□□□□ -0.35
SLX1	YBR228W	TIF4632	P39936	914 aa	Known RBP	12.84	□□□□□ -0.35
SLX1	YBR228W	EPS1	P40557	701 aa		12.79	□□□□□ -0.36
SLX1	YBR228W	RSM7	P47150	247 aa		12.74	□□□□□ -0.37
SLX1	YBR228W	BDF1	P35817	686 aa		12.71	□□□□□ -0.37
SLX1	YBR228W	TGL3	P40308	642 aa		12.69	□□□□□ -0.38
SLX1	YBR228W	BBC1	P47068	1157 aa		12.65	□□□□□ -0.38
SLX1	YBR228W	AI2	P03876	854 aa		12.62	□□□□□ -0.39
SLX1	YBR228W	YLR271W	Q06152	274 aa		12.56	□□□□□ -0.4
SLX1	YBR228W	BUD31	P25337	157 aa	Predicted RBP	12.49	□□□□□ -0.41
SLX1	YBR228W	SSP1	P38871	571 aa		12.47	□□□□□ -0.41
SLX1	YBR228W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	12.43	□□□□□ -0.42	not detected
SLX1	YBR228W	PSD2	P53037	1138 aa	Known RBP	12.32	□□□□□ -0.44
SLX1	YBR228W	UBP9	P39967	754 aa		12.3	□□□□□ -0.44
SLX1	YBR228W	YOR238W	Q08634	303 aa		12.22	□□□□□ -0.45
SLX1	YBR228W	MRM1	P25270	412 aa		12.21	□□□□□ -0.45
SLX1	YBR228W	YAP5	P40574	245 aa		12.18	□□□□□ -0.46
SLX1	YBR228W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	12.16	□□□□□ -0.46	not detected
SLX1	YBR228W	MGA2	P40578	1113 aa		12.15	□□□□□ -0.46
SLX1	YBR228W	CST9	Q06032	482 aa		12.15	□□□□□ -0.46
SLX1	YBR228W	MST1	P07236	462 aa		12.13	□□□□□ -0.47
SLX1	YBR228W	YBL029C-A	Q3E756	94 aa		12.04	□□□□□ -0.48
SLX1	YBR228W	SIS1	P25294	352 aa	Known RBP	12.01	□□□□□ -0.49
SLX1	YBR228W	PIB1	Q06651	286 aa		12	□□□□□ -0.49
SLX1	YBR228W	GTT3	P39996	337 aa		11.98	□□□□□ -0.49
SLX1	YBR228W	WSC3	Q12215	556 aa		11.95	□□□□□ -0.5
SLX1	YBR228W	RTG3	P38165	486 aa		11.93	□□□□□ -0.5
SLX1	YBR228W	VNX1	P42839	908 aa		11.86	□□□□□ -0.51
SLX1	YBR228W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.86	□□□□□ -0.51	not detected
SLX1	YBR228W	RCR1	P38212	213 aa		11.84	□□□□□ -0.51
SLX1	YBR228W	VPS29	P38759	282 aa		11.83	□□□□□ -0.52
SLX1	YBR228W	SPP1	Q03012	353 aa		11.83	□□□□□ -0.52
SLX1	YBR228W	YFR006W	P43590	535 aa		11.82	□□□□□ -0.52
SLX1	YBR228W	DBP1	P24784	617 aa	Known RBP	11.81	□□□□□ -0.52
SLX1	YBR228W	STS1	P38637	319 aa		11.75	□□□□□ -0.53
SLX1	YBR228W	TIF11	P38912	153 aa	Known RBP	11.69	□□□□□ -0.54
SLX1	YBR228W	VMA1	P17255	1071 aa	Known RBP	11.64	□□□□□ -0.55
SLX1	YBR228W	SET4	P42948	560 aa		11.62	□□□□□ -0.55
SLX1	YBR228W	YOL036W	Q08206	761 aa		11.61	□□□□□ -0.55
SLX1	YBR228W	ULI1	P43604	169 aa		11.6	□□□□□ -0.55
SLX1	YBR228W	MSB4	Q12317	492 aa		11.59	□□□□□ -0.55
SLX1	YBR228W	LDB19	Q12502	818 aa		11.55	□□□□□ -0.56
SLX1	YBR228W	EAP1	P36041	632 aa	Known RBP	11.53	□□□□□ -0.56
SLX1	YBR228W	RAM2	P29703	316 aa		11.52	□□□□□ -0.57
SLX1	YBR228W	SAM3	Q08986	587 aa		11.49	□□□□□ -0.57
SLX1	YBR228W	IOC2	Q12072	812 aa		11.48	□□□□□ -0.57
SLX1	YBR228W	MAK11	P20484	414 aa	Known RBP	11.46	□□□□□ -0.57
SLX1	YBR228W	FKH1	P40466	484 aa		11.46	□□□□□ -0.57
SLX1	YBR228W	TRP5	P00931	707 aa	Known RBP	11.45	□□□□□ -0.58
SLX1	YBR228W	MIF2	P35201	549 aa		11.44	□□□□□ -0.58
SLX1	YBR228W	GYP5	Q12344	894 aa		11.43	□□□□□ -0.58
SLX1	YBR228W	AIR2	Q12476	344 aa	Known RBP	11.42	□□□□□ -0.58
SLX1	YBR228W	YJL171C	P46992	396 aa		11.41	□□□□□ -0.58
SLX1	YBR228W	RTG1	P32607	177 aa		11.37	□□□□□ -0.59
SLX1	YBR228W	DCW1	P36091	449 aa		11.36	□□□□□ -0.59
SLX1	YBR228W	ABP1	P15891	592 aa	Known RBP	11.34	□□□□□ -0.59
SLX1	YBR228W	HTA1	P04911	132 aa	Known RBP	11.32	□□□□□ -0.6
SLX1	YBR228W	HTA2	P04912	132 aa		11.32	□□□□□ -0.6
SLX1	YBR228W	GRE2	Q12068	342 aa	Known RBP	11.32	□□□□□ -0.6
SLX1	YBR228W	COQ8	P27697	501 aa		11.31	□□□□□ -0.6
SLX1	YBR228W	EDS1	P38073	919 aa		11.31	□□□□□ -0.6
SLX1	YBR228W	YNL035C	P53962	389 aa	Known RBP	11.31	□□□□□ -0.6
SLX1	YBR228W	PTC3	P34221	468 aa	Known RBP	11.27	□□□□□ -0.61
SLX1	YBR228W	NCR1	Q12200	1170 aa		11.27	□□□□□ -0.61

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms