RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W SGS1P35187 1447 aa26.2■■□□□ 1.78
DEP1YAL013W INO80P53115 1489 aa25.88■■□□□ 1.73
DEP1YAL013W MON2P48563 1636 aaPredicted RBP25.78■■□□□ 1.72
DEP1YAL013W TCB3Q03640 1545 aaKnown RBP25.7■■□□□ 1.7
DEP1YAL013W TY1B-DR4Q07793 1604 aa25.52■■□□□ 1.68
DEP1YAL013W SWR1Q05471 1514 aa25.07■■□□□ 1.6
DEP1YAL013W HSL1P34244 1518 aa24.87■■□□□ 1.57
DEP1YAL013W SSN2P38931 1420 aa24.83■■□□□ 1.57
DEP1YAL013W SPA2P23201 1466 aaKnown RBP24.83■■□□□ 1.56
DEP1YAL013W SPT6P23615 1451 aaKnown RBP24.76■■□□□ 1.55
DEP1YAL013W DNA2P38859 1522 aa24.46■■□□□ 1.51
DEP1YAL013W HIR3P47171 1648 aa24.4■■□□□ 1.5
DEP1YAL013W KOG1P38873 1557 aa24.32■■□□□ 1.48
DEP1YAL013W XRN1P22147 1528 aaKnown RBP24.1■■□□□ 1.45
DEP1YAL013W DRS1P32892 752 aaKnown RBP23.91■■□□□ 1.42
DEP1YAL013W REV3P14284 1504 aa23.79■■□□□ 1.4
DEP1YAL013W THO2P53552 1597 aaKnown RBP23.76■■□□□ 1.39
DEP1YAL013W SIN3P22579 1536 aa23.68■■□□□ 1.38
DEP1YAL013W BUD4P47136 1447 aa23.66■■□□□ 1.38
DEP1YAL013W ECM5Q03214 1411 aa23.61■■□□□ 1.37
DEP1YAL013W SSK2P53599 1579 aa23.49■■□□□ 1.35
DEP1YAL013W ATG2P53855 1592 aa23.42■■□□□ 1.34
DEP1YAL013W PEP1P32319 1579 aa23.34■■□□□ 1.33
DEP1YAL013W TAF2P23255 1407 aa23.33■■□□□ 1.32
DEP1YAL013W ESP1Q03018 1630 aa23.3■■□□□ 1.32
DEP1YAL013W MDS3P53094 1487 aa23.3■■□□□ 1.32
DEP1YAL013W MYO2P19524 1574 aaKnown RBP23.11■■□□□ 1.29
DEP1YAL013W SKI3P17883 1432 aaKnown RBP23.06■■□□□ 1.28
DEP1YAL013W YPK9Q12697 1472 aa22.97■■□□□ 1.27
DEP1YAL013W SCC2Q04002 1493 aa22.79■■□□□ 1.24
DEP1YAL013W RPO31P04051 1460 aa22.7■■□□□ 1.22
DEP1YAL013W POL1P13382 1468 aa22.7■■□□□ 1.22
DEP1YAL013W RSE1Q04693 1361 aaKnown RBP22.64■■□□□ 1.22
DEP1YAL013W UFD4P33202 1483 aa22.62■■□□□ 1.21
DEP1YAL013W BPT1P14772 1559 aa22.58■■□□□ 1.2
DEP1YAL013W TY2B-LR1P0C2J3 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-FP0CX63 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-GR2P0CX64 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-CP25384 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-DR2Q03494 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY1B-DR1Q03855 1755 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-DR3Q07791 1770 aaKnown RBP22.51■■□□□ 1.19
DEP1YAL013W TY2B-OR1Q12113 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-DR1Q12472 1770 aa22.51■■□□□ 1.19
DEP1YAL013W TY2B-OR2Q12501 1770 aa22.51■■□□□ 1.19
DEP1YAL013W STU1P38198 1513 aa22.51■■□□□ 1.19
DEP1YAL013W YCF1P39109 1515 aaKnown RBP22.51■■□□□ 1.19
DEP1YAL013W RKR1Q04781 1562 aa22.5■■□□□ 1.19
DEP1YAL013W TOP2P06786 1428 aaKnown RBP22.46■■□□□ 1.19
DEP1YAL013W YOR1P53049 1477 aa22.4■■□□□ 1.18
DEP1YAL013W TY1B-DR3Q99231 1755 aa22.35■■□□□ 1.17
DEP1YAL013W TY2B-BQ12491 1770 aa22.29■■□□□ 1.16
DEP1YAL013W SMC4Q12267 1418 aa22.29■■□□□ 1.16
DEP1YAL013W TY1B-BRQ12193 1756 aa22.25■■□□□ 1.15
DEP1YAL013W TY1B-GR3Q12316 1755 aa22.25■■□□□ 1.15
DEP1YAL013W TY1B-ORQ92393 1755 aa22.25■■□□□ 1.15
DEP1YAL013W YTA7P40340 1379 aa22.24■■□□□ 1.15
DEP1YAL013W CHD1P32657 1468 aa22.22■■□□□ 1.15
DEP1YAL013W TY1B-HO13535 1793 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-DR5P0C2I2 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-DR6P0C2I3 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-LR2P0C2I5 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-LR3P0C2I6 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W TY1B-PR1P0C2I9 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W TY1B-PR2P0C2J0 1756 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-PR3P0C2J1 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W TY1B-JR1P47098 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-ML2Q03434 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W TY1B-ER1Q03612 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-ML1Q04711 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W TY1B-GR2Q12269 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-OLQ12273 1755 aa22.18■■□□□ 1.14
DEP1YAL013W TY1B-PLQ12414 1755 aaKnown RBP22.18■■□□□ 1.14
DEP1YAL013W CDC25P04821 1589 aa22.13■■□□□ 1.13
DEP1YAL013W MYO4P32492 1471 aa22.12■■□□□ 1.13
DEP1YAL013W MMS22Q06164 1454 aa22.03■■□□□ 1.12
DEP1YAL013W PAN1P32521 1480 aa21.97■■□□□ 1.11
DEP1YAL013W MTC1P47018 478 aaKnown RBP21.96■■□□□ 1.11
DEP1YAL013W SPP41P38904 1435 aa21.92■■□□□ 1.1
DEP1YAL013W ESC1Q03661 1658 aaKnown RBP21.88■■□□□ 1.09
DEP1YAL013W DNF1P32660 1571 aa21.85■■□□□ 1.09
DEP1YAL013W RQC2Q12532 1038 aaKnown RBP21.81■■□□□ 1.08
DEP1YAL013W RPA190P10964 1664 aaKnown RBP21.8■■□□□ 1.08
DEP1YAL013W TY1B-JR2P47100 1755 aaKnown RBP21.79■■□□□ 1.08
DEP1YAL013W TY1B-ER2Q03619 1755 aa21.79■■□□□ 1.08
DEP1YAL013W TY1B-MR1Q04214 1755 aa21.79■■□□□ 1.08
DEP1YAL013W TY1B-MR2Q04670 1755 aaKnown RBP21.79■■□□□ 1.08
DEP1YAL013W TY1B-LR1Q12088 1755 aaKnown RBP21.79■■□□□ 1.08
DEP1YAL013W TY1B-NL1Q12112 1755 aa21.79■■□□□ 1.08
DEP1YAL013W TY1B-GR1Q12141 1755 aa21.79■■□□□ 1.08
DEP1YAL013W TY1B-BLQ12490 1755 aa21.79■■□□□ 1.08
DEP1YAL013W TSC11P40061 1430 aa21.78■■□□□ 1.08
DEP1YAL013W SNQ2P32568 1501 aaKnown RBP21.77■■□□□ 1.08
DEP1YAL013W VTH1P40438 1549 aa21.77■■□□□ 1.08
DEP1YAL013W VTH2P40890 1549 aa21.77■■□□□ 1.08
DEP1YAL013W TRM732Q03496 1420 aa21.63■■□□□ 1.05
DEP1YAL013W MLP2P40457 1679 aa21.63■■□□□ 1.05
DEP1YAL013W SAS10Q12136 610 aaPredicted RBP21.61■■□□□ 1.05
DEP1YAL013W STH1P32597 1359 aa21.61■■□□□ 1.05
DEP1YAL013W SNT2P53127 1403 aa21.57■■□□□ 1.04
Retrieved 100 of 5,963 RNA–protein pairs in 14.8 ms