RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-231ENST00000640501 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
PNKP-231ENST00000640501 CCDC180Q9P1Z9 1646 aa15.87■□□□□ 0.13
PNKP-231ENST00000640501 ZCCHC6Q5VYS8 1495 aaKnown RBP15.3■□□□□ 0.04
PNKP-231ENST00000640501 DCAF1Q9Y4B6 1507 aa15.11■□□□□ 0.01
PNKP-231ENST00000640501 DCAF8L2P0C7V8 631 aa14.91□□□□□ -0.02
PNKP-231ENST00000640501 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
PNKP-231ENST00000640501 SHROOM4Q9ULL8 1493 aa14.86□□□□□ -0.03
PNKP-231ENST00000640501 NACADO15069 1562 aa14.71□□□□□ -0.05
PNKP-231ENST00000640501 ABCC9O60706 1549 aa14.65□□□□□ -0.06
PNKP-231ENST00000640501 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
PNKP-231ENST00000640501 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
PNKP-231ENST00000640501 SUPT5HO00267 1087 aaKnown RBP14.45□□□□□ -0.1
PNKP-231ENST00000640501 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
PNKP-231ENST00000640501 RSF1Q96T23 1441 aaPredicted RBP14.13□□□□□ -0.15
PNKP-231ENST00000640501 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
PNKP-231ENST00000640501 CECR2Q9BXF3 1484 aa13.99□□□□□ -0.17
PNKP-231ENST00000640501 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
PNKP-231ENST00000640501 SMARCA4P51532 1647 aa13.95□□□□□ -0.18
PNKP-231ENST00000640501 BICRAQ9NZM4 1560 aa13.94□□□□□ -0.18
PNKP-231ENST00000640501 CHIC1Q5VXU3 224 aa13.93□□□□□ -0.18
PNKP-231ENST00000640501 WIZO95785 1651 aa13.91□□□□□ -0.18
PNKP-231ENST00000640501 TOP2AP11388 1531 aaKnown RBP13.84□□□□□ -0.19
PNKP-231ENST00000640501 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
PNKP-231ENST00000640501 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
PNKP-231ENST00000640501 SMARCA2P51531 1590 aa13.74□□□□□ -0.21
PNKP-231ENST00000640501 TRIM41Q8WV44 630 aa13.67□□□□□ -0.22
PNKP-231ENST00000640501 CCDC88BA6NC98 1476 aa13.63□□□□□ -0.23
PNKP-231ENST00000640501 BAZ1BQ9UIG0 1483 aaKnown RBP13.62□□□□□ -0.23
PNKP-231ENST00000640501 ATAD2BQ9ULI0 1458 aa13.62□□□□□ -0.23
PNKP-231ENST00000640501 EIF4G1Q04637 1599 aaKnown RBP13.6□□□□□ -0.23
PNKP-231ENST00000640501 HMGXB3Q12766 1538 aa13.55□□□□□ -0.24
PNKP-231ENST00000640501 NCAPD3P42695 1498 aa13.5□□□□□ -0.25
PNKP-231ENST00000640501 EEA1Q15075 1411 aa13.39□□□□□ -0.27
PNKP-231ENST00000640501 ABCC8Q09428 1581 aa13.38□□□□□ -0.27
PNKP-231ENST00000640501 WRNQ14191 1432 aaPredicted RBP eCLIP13.36□□□□□ -0.27
PNKP-231ENST00000640501 LOC105371045A0A1W2PR82 267 aa13.33□□□□□ -0.28
PNKP-231ENST00000640501 PRDM2Q13029 1718 aa13.32□□□□□ -0.28
PNKP-231ENST00000640501 FAM9AQ8IZU1 332 aaPredicted RBP13.31□□□□□ -0.28
PNKP-231ENST00000640501 CC2D2AQ9P2K1 1620 aa13.3□□□□□ -0.28
PNKP-231ENST00000640501 CFTRP13569 1480 aa13.25□□□□□ -0.29
PNKP-231ENST00000640501 TOP2BQ02880 1626 aa13.24□□□□□ -0.29
PNKP-231ENST00000640501 BIVM-ERCC5R4GMW8 1640 aa13.24□□□□□ -0.29
PNKP-231ENST00000640501 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
PNKP-231ENST00000640501 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
PNKP-231ENST00000640501 CADPSQ9ULU8 1353 aa13.17□□□□□ -0.3
PNKP-231ENST00000640501 SOGA1O94964 1423 aa13.16□□□□□ -0.3
PNKP-231ENST00000640501 GOLGA3Q08378 1498 aa13.16□□□□□ -0.3
PNKP-231ENST00000640501 KIF21BO75037 1637 aa13.15□□□□□ -0.3
PNKP-231ENST00000640501 CEP164Q9UPV0 1460 aa13.15□□□□□ -0.3
PNKP-231ENST00000640501 TNIKQ9UKE5 1360 aa13.12□□□□□ -0.31
PNKP-231ENST00000640501 TRIM26Q12899 539 aaPredicted RBP13.1□□□□□ -0.31
PNKP-231ENST00000640501 LAMC3Q9Y6N6 1575 aa13.08□□□□□ -0.32
PNKP-231ENST00000640501 CUX1P39880 1505 aa13.08□□□□□ -0.32
PNKP-231ENST00000640501 UBTFP17480 764 aaKnown RBP13.06□□□□□ -0.32
PNKP-231ENST00000640501 KIF27Q86VH2 1401 aa13.05□□□□□ -0.32
PNKP-231ENST00000640501 EHMT2Q96KQ7 1210 aa13.05□□□□□ -0.32
PNKP-231ENST00000640501 PCGF6Q9BYE7 350 aa13.05□□□□□ -0.32
PNKP-231ENST00000640501 RUSC2Q8N2Y8 1516 aa13.04□□□□□ -0.32
PNKP-231ENST00000640501 CEP162Q5TB80 1403 aa13.04□□□□□ -0.32
PNKP-231ENST00000640501 ERICH3Q5RHP9 1530 aa13.03□□□□□ -0.32
PNKP-231ENST00000640501 FANCD2Q9BXW9 1451 aa13.03□□□□□ -0.32
PNKP-231ENST00000640501 DNMBPQ6XZF7 1577 aa12.99□□□□□ -0.33
PNKP-231ENST00000640501 PDS5BQ9NTI5 1447 aa12.97□□□□□ -0.33
PNKP-231ENST00000640501 FGD5Q6ZNL6 1462 aa12.94□□□□□ -0.34
PNKP-231ENST00000640501 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
PNKP-231ENST00000640501 CLIP1P30622 1438 aa12.92□□□□□ -0.34
PNKP-231ENST00000640501 RAPGEF2Q9Y4G8 1499 aa12.91□□□□□ -0.34
PNKP-231ENST00000640501 CUX2O14529 1486 aa12.91□□□□□ -0.34
PNKP-231ENST00000640501 TOPBP1Q92547 1522 aa12.89□□□□□ -0.35
PNKP-231ENST00000640501 HRCP23327 699 aa12.88□□□□□ -0.35
PNKP-231ENST00000640501 NESP48681 1621 aa12.88□□□□□ -0.35
PNKP-231ENST00000640501 ABCA10Q8WWZ4 1543 aa12.86□□□□□ -0.35
PNKP-231ENST00000640501 APLP2Q06481 763 aa12.85□□□□□ -0.35
PNKP-231ENST00000640501 CUL7Q14999 1698 aa12.85□□□□□ -0.35
PNKP-231ENST00000640501 VPS8Q8N3P4 1428 aa12.84□□□□□ -0.35
PNKP-231ENST00000640501 POLA1P09884 1462 aaPredicted RBP12.84□□□□□ -0.35
PNKP-231ENST00000640501 KIF21AQ7Z4S6 1674 aa12.83□□□□□ -0.36
PNKP-231ENST00000640501 ZEB1P37275 1124 aaPredicted RBP12.82□□□□□ -0.36
PNKP-231ENST00000640501 WDR97A6NE52 1622 aa12.8□□□□□ -0.36
PNKP-231ENST00000640501 IGF1RP08069 1367 aa12.8□□□□□ -0.36
PNKP-231ENST00000640501 CARMIL1Q5VZK9 1371 aa12.8□□□□□ -0.36
PNKP-231ENST00000640501 URB2Q14146 1524 aaKnown RBP12.79□□□□□ -0.36
PNKP-231ENST00000640501 MRC2Q9UBG0 1479 aa12.75□□□□□ -0.37
PNKP-231ENST00000640501 ABCA5Q8WWZ7 1642 aa12.73□□□□□ -0.37
PNKP-231ENST00000640501 RAD54L2Q9Y4B4 1467 aa12.73□□□□□ -0.37
PNKP-231ENST00000640501 CTTNBP2Q8WZ74 1663 aa12.72□□□□□ -0.37
PNKP-231ENST00000640501 GAPVD1Q14C86 1478 aa12.71□□□□□ -0.38
PNKP-231ENST00000640501 EFCAB5A4FU69 1503 aa12.69□□□□□ -0.38
PNKP-231ENST00000640501 ARAP1Q96P48 1450 aa12.69□□□□□ -0.38
PNKP-231ENST00000640501 TARBP1Q13395 1621 aaKnown RBP12.69□□□□□ -0.38
PNKP-231ENST00000640501 PPARGC1BQ86YN6 1023 aaKnown RBP12.68□□□□□ -0.38
PNKP-231ENST00000640501 RANGAP1P46060 587 aaPredicted RBP12.67□□□□□ -0.38
PNKP-231ENST00000640501 FHAD1B1AJZ9 1412 aa12.67□□□□□ -0.38
PNKP-231ENST00000640501 WDR62O43379 1518 aa12.67□□□□□ -0.38
PNKP-231ENST00000640501 ARHGAP35Q9NRY4 1499 aa12.66□□□□□ -0.38
PNKP-231ENST00000640501 ERCC6Q03468 1493 aa12.65□□□□□ -0.38
PNKP-231ENST00000640501 PBRM1Q86U86 1689 aa12.65□□□□□ -0.38
PNKP-231ENST00000640501 IFT140Q96RY7 1462 aa12.65□□□□□ -0.38
PNKP-231ENST00000640501 MAP3K1Q13233 1512 aa12.64□□□□□ -0.39
PNKP-231ENST00000640501 TDRD9Q8NDG6 1382 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms