RNA–Protein interactions for RNA: ENST00000637519.1

CHRNA7-228, Transcript of cholinergic receptor nicotinic alpha 7 subunit, humanhuman

TSL 5

Gene CHRNA7, Length 2,084 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA7-228ENST00000637519 NISCHQ9Y2I1 1504 aa48.48■■■■■ 5.35
CHRNA7-228ENST00000637519 CCDC180Q9P1Z9 1646 aa41.99■■■■■ 4.31
CHRNA7-228ENST00000637519 ZCCHC6Q5VYS8 1495 aaKnown RBP40.78■■■■■ 4.12
CHRNA7-228ENST00000637519 DCAF8L2P0C7V8 631 aa40.25■■■■■ 4.03
CHRNA7-228ENST00000637519 SHROOM4Q9ULL8 1493 aa40.11■■■■■ 4.01
CHRNA7-228ENST00000637519 DCAF1Q9Y4B6 1507 aa39.89■■■■□ 3.98
CHRNA7-228ENST00000637519 ABCC9O60706 1549 aa39.82■■■■□ 3.96
CHRNA7-228ENST00000637519 MYO15BQ96JP2 1530 aa39.26■■■■□ 3.88
CHRNA7-228ENST00000637519 NACADO15069 1562 aa39.07■■■■□ 3.84
CHRNA7-228ENST00000637519 SCRIBQ14160 1630 aa38.96■■■■□ 3.83
CHRNA7-228ENST00000637519 RB1CC1Q8TDY2 1594 aa38.72■■■■□ 3.79
CHRNA7-228ENST00000637519 SUPT5HO00267 1087 aaKnown RBP38.64■■■■□ 3.78
CHRNA7-228ENST00000637519 UNC13AQ9UPW8 1703 aa38.08■■■■□ 3.69
CHRNA7-228ENST00000637519 CECR2Q9BXF3 1484 aa37.82■■■■□ 3.65
CHRNA7-228ENST00000637519 RSF1Q96T23 1441 aaPredicted RBP37.78■■■■□ 3.64
CHRNA7-228ENST00000637519 PABPN1Q86U42 306 aaKnown RBP eCLIP37.68■■■■□ 3.62
CHRNA7-228ENST00000637519 BICRAQ9NZM4 1560 aa37.67■■■■□ 3.62
CHRNA7-228ENST00000637519 MROH2BQ7Z745 1585 aa37.58■■■■□ 3.61
CHRNA7-228ENST00000637519 BAZ1AQ9NRL2 1556 aaPredicted RBP37.36■■■■□ 3.57
CHRNA7-228ENST00000637519 WIZO95785 1651 aa37.31■■■■□ 3.56
CHRNA7-228ENST00000637519 SMARCA4P51532 1647 aa37.22■■■■□ 3.55
CHRNA7-228ENST00000637519 CHIC1Q5VXU3 224 aa37■■■■□ 3.51
CHRNA7-228ENST00000637519 TOP2AP11388 1531 aaKnown RBP36.78■■■■□ 3.48
CHRNA7-228ENST00000637519 PEG3Q9GZU2 1588 aa36.63■■■■□ 3.46
CHRNA7-228ENST00000637519 ATAD2BQ9ULI0 1458 aa36.56■■■■□ 3.44
CHRNA7-228ENST00000637519 SMARCA2P51531 1590 aa36.51■■■■□ 3.44
CHRNA7-228ENST00000637519 EIF4G1Q04637 1599 aaKnown RBP36.5■■■■□ 3.43
CHRNA7-228ENST00000637519 CCDC88BA6NC98 1476 aa36.5■■■■□ 3.43
CHRNA7-228ENST00000637519 BAZ1BQ9UIG0 1483 aaKnown RBP36.38■■■■□ 3.41
CHRNA7-228ENST00000637519 TRIM41Q8WV44 630 aa36.16■■■■□ 3.38
CHRNA7-228ENST00000637519 NCAPD3P42695 1498 aa36.1■■■■□ 3.37
CHRNA7-228ENST00000637519 HMGXB3Q12766 1538 aa36.06■■■■□ 3.36
CHRNA7-228ENST00000637519 ABCC8Q09428 1581 aa35.95■■■■□ 3.35
CHRNA7-228ENST00000637519 CC2D2AQ9P2K1 1620 aa35.93■■■■□ 3.34
CHRNA7-228ENST00000637519 LOC105371045A0A1W2PR82 267 aa35.76■■■■□ 3.31
CHRNA7-228ENST00000637519 FAM9AQ8IZU1 332 aaPredicted RBP35.73■■■■□ 3.31
CHRNA7-228ENST00000637519 WRNQ14191 1432 aaPredicted RBP eCLIP35.53■■■■□ 3.28
CHRNA7-228ENST00000637519 SYNJ1O43426 1573 aa35.45■■■■□ 3.27
CHRNA7-228ENST00000637519 CFTRP13569 1480 aa35.43■■■■□ 3.26
CHRNA7-228ENST00000637519 EHMT2Q96KQ7 1210 aa35.39■■■■□ 3.26
CHRNA7-228ENST00000637519 SOGA1O94964 1423 aa35.31■■■■□ 3.24
CHRNA7-228ENST00000637519 CADPSQ9ULU8 1353 aa35.26■■■■□ 3.24
CHRNA7-228ENST00000637519 DNAJC5BQ9UF47 199 aa35.23■■■■□ 3.23
CHRNA7-228ENST00000637519 RUSC2Q8N2Y8 1516 aa35.2■■■■□ 3.23
CHRNA7-228ENST00000637519 PRDM2Q13029 1718 aa35.17■■■■□ 3.22
CHRNA7-228ENST00000637519 TOP2BQ02880 1626 aa35.16■■■■□ 3.22
CHRNA7-228ENST00000637519 CUX1P39880 1505 aa35.1■■■■□ 3.21
CHRNA7-228ENST00000637519 BIVM-ERCC5R4GMW8 1640 aa35.09■■■■□ 3.21
CHRNA7-228ENST00000637519 NESP48681 1621 aa35.07■■■■□ 3.2
CHRNA7-228ENST00000637519 EEA1Q15075 1411 aa34.98■■■■□ 3.19
CHRNA7-228ENST00000637519 FANCD2Q9BXW9 1451 aa34.93■■■■□ 3.18
CHRNA7-228ENST00000637519 CSRNP3Q8WYN3 585 aa34.93■■■■□ 3.18
CHRNA7-228ENST00000637519 LAMC3Q9Y6N6 1575 aa34.82■■■■□ 3.16
CHRNA7-228ENST00000637519 FGD5Q6ZNL6 1462 aa34.67■■■■□ 3.14
CHRNA7-228ENST00000637519 GOLGA3Q08378 1498 aa34.66■■■■□ 3.14
CHRNA7-228ENST00000637519 CEP164Q9UPV0 1460 aa34.65■■■■□ 3.14
CHRNA7-228ENST00000637519 UBTFP17480 764 aaKnown RBP34.62■■■■□ 3.13
CHRNA7-228ENST00000637519 KIF21BO75037 1637 aa34.61■■■■□ 3.13
CHRNA7-228ENST00000637519 DNMBPQ6XZF7 1577 aa34.6■■■■□ 3.13
CHRNA7-228ENST00000637519 TOPBP1Q92547 1522 aa34.57■■■■□ 3.13
CHRNA7-228ENST00000637519 TNIKQ9UKE5 1360 aa34.57■■■■□ 3.13
CHRNA7-228ENST00000637519 PDS5BQ9NTI5 1447 aa34.56■■■■□ 3.12
CHRNA7-228ENST00000637519 KIF27Q86VH2 1401 aa34.55■■■■□ 3.12
CHRNA7-228ENST00000637519 KIF21AQ7Z4S6 1674 aa34.55■■■■□ 3.12
CHRNA7-228ENST00000637519 RAPGEF2Q9Y4G8 1499 aa34.55■■■■□ 3.12
CHRNA7-228ENST00000637519 CEP162Q5TB80 1403 aa34.53■■■■□ 3.12
CHRNA7-228ENST00000637519 URB2Q14146 1524 aaKnown RBP34.52■■■■□ 3.12
CHRNA7-228ENST00000637519 CUX2O14529 1486 aa34.51■■■■□ 3.11
CHRNA7-228ENST00000637519 POLA1P09884 1462 aaPredicted RBP34.46■■■■□ 3.11
CHRNA7-228ENST00000637519 RAD54L2Q9Y4B4 1467 aa34.44■■■■□ 3.1
CHRNA7-228ENST00000637519 PRXQ9BXM0 1461 aa34.41■■■■□ 3.1
CHRNA7-228ENST00000637519 PCGF6Q9BYE7 350 aa34.37■■■■□ 3.09
CHRNA7-228ENST00000637519 ERICH3Q5RHP9 1530 aa34.3■■■■□ 3.08
CHRNA7-228ENST00000637519 IGF1RP08069 1367 aa34.28■■■■□ 3.08
CHRNA7-228ENST00000637519 ABCA10Q8WWZ4 1543 aa34.27■■■■□ 3.08
CHRNA7-228ENST00000637519 RANGAP1P46060 587 aaPredicted RBP34.22■■■■□ 3.07
CHRNA7-228ENST00000637519 PPARGC1BQ86YN6 1023 aaKnown RBP34.2■■■■□ 3.07
CHRNA7-228ENST00000637519 CLIP1P30622 1438 aa34.17■■■■□ 3.06
CHRNA7-228ENST00000637519 MRC2Q9UBG0 1479 aa34.16■■■■□ 3.06
CHRNA7-228ENST00000637519 WDR97A6NE52 1622 aa34.15■■■■□ 3.06
CHRNA7-228ENST00000637519 CARMIL1Q5VZK9 1371 aa34.1■■■■□ 3.05
CHRNA7-228ENST00000637519 TRIM26Q12899 539 aaPredicted RBP34.1■■■■□ 3.05
CHRNA7-228ENST00000637519 TDRD9Q8NDG6 1382 aaKnown RBP34.07■■■■□ 3.04
CHRNA7-228ENST00000637519 ERCC6Q03468 1493 aa34.03■■■■□ 3.04
CHRNA7-228ENST00000637519 TARBP1Q13395 1621 aaKnown RBP34.02■■■■□ 3.04
CHRNA7-228ENST00000637519 ABCA5Q8WWZ7 1642 aa34■■■■□ 3.03
CHRNA7-228ENST00000637519 WDR62O43379 1518 aa33.96■■■■□ 3.03
CHRNA7-228ENST00000637519 GAPVD1Q14C86 1478 aa33.93■■■■□ 3.02
CHRNA7-228ENST00000637519 TTBK1Q5TCY1 1321 aaPredicted RBP33.92■■■■□ 3.02
CHRNA7-228ENST00000637519 CUL7Q14999 1698 aa33.88■■■■□ 3.01
CHRNA7-228ENST00000637519 VPS8Q8N3P4 1428 aa33.87■■■■□ 3.01
CHRNA7-228ENST00000637519 THOC2Q8NI27 1593 aaKnown RBP33.85■■■■□ 3.01
CHRNA7-228ENST00000637519 ARAP1Q96P48 1450 aa33.84■■■■□ 3.01
CHRNA7-228ENST00000637519 AQRO60306 1485 aaKnown RBP eCLIP33.81■■■■□ 3
CHRNA7-228ENST00000637519 ARHGAP35Q9NRY4 1499 aa33.76■■■■□ 3
CHRNA7-228ENST00000637519 ZNF608Q9ULD9 1512 aaPredicted RBP33.76■■■■□ 3
CHRNA7-228ENST00000637519 IFT140Q96RY7 1462 aa33.74■■■□□ 2.99
CHRNA7-228ENST00000637519 PBRM1Q86U86 1689 aa33.72■■■□□ 2.99
CHRNA7-228ENST00000637519 CTTNBP2Q8WZ74 1663 aa33.6■■■□□ 2.97
CHRNA7-228ENST00000637519 GRIN2BQ13224 1484 aa33.58■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms