RNA–Protein interactions for RNA: ENST00000636058.1

CACNA1A-223, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 656 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-223ENST00000636058 NISCHQ9Y2I1 1504 aa22.43■■□□□ 1.18
CACNA1A-223ENST00000636058 CCDC180Q9P1Z9 1646 aa19.73■□□□□ 0.75
CACNA1A-223ENST00000636058 ABCC9O60706 1549 aa18.8■□□□□ 0.6
CACNA1A-223ENST00000636058 ZCCHC6Q5VYS8 1495 aaKnown RBP18.8■□□□□ 0.6
CACNA1A-223ENST00000636058 DCAF1Q9Y4B6 1507 aa18.59■□□□□ 0.57
CACNA1A-223ENST00000636058 MYO15BQ96JP2 1530 aa18.49■□□□□ 0.55
CACNA1A-223ENST00000636058 DCAF8L2P0C7V8 631 aa18.47■□□□□ 0.55
CACNA1A-223ENST00000636058 NACADO15069 1562 aa18.42■□□□□ 0.54
CACNA1A-223ENST00000636058 RB1CC1Q8TDY2 1594 aa18.31■□□□□ 0.52
CACNA1A-223ENST00000636058 SCRIBQ14160 1630 aa18.04■□□□□ 0.48
CACNA1A-223ENST00000636058 SHROOM4Q9ULL8 1493 aa17.99■□□□□ 0.47
CACNA1A-223ENST00000636058 UNC13AQ9UPW8 1703 aa17.94■□□□□ 0.46
CACNA1A-223ENST00000636058 BICRAQ9NZM4 1560 aa17.77■□□□□ 0.44
CACNA1A-223ENST00000636058 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
CACNA1A-223ENST00000636058 CECR2Q9BXF3 1484 aa17.42■□□□□ 0.38
CACNA1A-223ENST00000636058 BAZ1AQ9NRL2 1556 aaPredicted RBP17.35■□□□□ 0.37
CACNA1A-223ENST00000636058 SMARCA4P51532 1647 aa17.31■□□□□ 0.36
CACNA1A-223ENST00000636058 MROH2BQ7Z745 1585 aa17.3■□□□□ 0.36
CACNA1A-223ENST00000636058 RSF1Q96T23 1441 aaPredicted RBP17.28■□□□□ 0.36
CACNA1A-223ENST00000636058 EIF4G1Q04637 1599 aaKnown RBP17.24■□□□□ 0.35
CACNA1A-223ENST00000636058 SUPT5HO00267 1087 aaKnown RBP17.16■□□□□ 0.34
CACNA1A-223ENST00000636058 PEG3Q9GZU2 1588 aa17.15■□□□□ 0.34
CACNA1A-223ENST00000636058 WIZO95785 1651 aa17.14■□□□□ 0.33
CACNA1A-223ENST00000636058 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
CACNA1A-223ENST00000636058 ATAD2BQ9ULI0 1458 aa17.07■□□□□ 0.32
CACNA1A-223ENST00000636058 CC2D2AQ9P2K1 1620 aa17.05■□□□□ 0.32
CACNA1A-223ENST00000636058 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
CACNA1A-223ENST00000636058 NCAPD3P42695 1498 aa16.99■□□□□ 0.31
CACNA1A-223ENST00000636058 HMGXB3Q12766 1538 aa16.96■□□□□ 0.31
CACNA1A-223ENST00000636058 BAZ1BQ9UIG0 1483 aaKnown RBP16.95■□□□□ 0.3
CACNA1A-223ENST00000636058 DNAJC5BQ9UF47 199 aa16.8■□□□□ 0.28
CACNA1A-223ENST00000636058 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
CACNA1A-223ENST00000636058 CFTRP13569 1480 aa16.53■□□□□ 0.24
CACNA1A-223ENST00000636058 CADPSQ9ULU8 1353 aa16.51■□□□□ 0.23
CACNA1A-223ENST00000636058 PRDM2Q13029 1718 aa16.47■□□□□ 0.23
CACNA1A-223ENST00000636058 LAMC3Q9Y6N6 1575 aa16.47■□□□□ 0.23
CACNA1A-223ENST00000636058 NESP48681 1621 aa16.43■□□□□ 0.22
CACNA1A-223ENST00000636058 CHIC1Q5VXU3 224 aa16.33■□□□□ 0.2
CACNA1A-223ENST00000636058 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.2
CACNA1A-223ENST00000636058 ABCC8Q09428 1581 aa16.32■□□□□ 0.2
CACNA1A-223ENST00000636058 PDS5BQ9NTI5 1447 aa16.31■□□□□ 0.2
CACNA1A-223ENST00000636058 KIF21AQ7Z4S6 1674 aa16.27■□□□□ 0.19
CACNA1A-223ENST00000636058 WRNQ14191 1432 aaPredicted RBP eCLIP16.27■□□□□ 0.19
CACNA1A-223ENST00000636058 CEP164Q9UPV0 1460 aa16.25■□□□□ 0.19
CACNA1A-223ENST00000636058 SYNJ1O43426 1573 aa16.22■□□□□ 0.19
CACNA1A-223ENST00000636058 CUX1P39880 1505 aa16.19■□□□□ 0.18
CACNA1A-223ENST00000636058 TOP2BQ02880 1626 aa16.19■□□□□ 0.18
CACNA1A-223ENST00000636058 BIVM-ERCC5R4GMW8 1640 aa16.19■□□□□ 0.18
CACNA1A-223ENST00000636058 TRIM41Q8WV44 630 aa16.19■□□□□ 0.18
CACNA1A-223ENST00000636058 DNMBPQ6XZF7 1577 aa16.15■□□□□ 0.18
CACNA1A-223ENST00000636058 ERCC6Q03468 1493 aa16.15■□□□□ 0.18
CACNA1A-223ENST00000636058 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.18
CACNA1A-223ENST00000636058 MRC2Q9UBG0 1479 aa16.13■□□□□ 0.17
CACNA1A-223ENST00000636058 TOPBP1Q92547 1522 aa16.13■□□□□ 0.17
CACNA1A-223ENST00000636058 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
CACNA1A-223ENST00000636058 WDR62O43379 1518 aa16.08■□□□□ 0.16
CACNA1A-223ENST00000636058 FGD5Q6ZNL6 1462 aa16.06■□□□□ 0.16
CACNA1A-223ENST00000636058 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
CACNA1A-223ENST00000636058 SOGA1O94964 1423 aa15.95■□□□□ 0.14
CACNA1A-223ENST00000636058 CUX2O14529 1486 aa15.94■□□□□ 0.14
CACNA1A-223ENST00000636058 RAD54L2Q9Y4B4 1467 aa15.94■□□□□ 0.14
CACNA1A-223ENST00000636058 WDR97A6NE52 1622 aa15.94■□□□□ 0.14
CACNA1A-223ENST00000636058 TARBP1Q13395 1621 aaKnown RBP15.93■□□□□ 0.14
CACNA1A-223ENST00000636058 ABCA10Q8WWZ4 1543 aa15.93■□□□□ 0.14
CACNA1A-223ENST00000636058 RUSC2Q8N2Y8 1516 aa15.91■□□□□ 0.14
CACNA1A-223ENST00000636058 EEA1Q15075 1411 aa15.91■□□□□ 0.14
CACNA1A-223ENST00000636058 IFT140Q96RY7 1462 aa15.9■□□□□ 0.14
CACNA1A-223ENST00000636058 KIF27Q86VH2 1401 aa15.87■□□□□ 0.13
CACNA1A-223ENST00000636058 ABCA5Q8WWZ7 1642 aa15.84■□□□□ 0.13
CACNA1A-223ENST00000636058 FAM9AQ8IZU1 332 aaPredicted RBP15.84■□□□□ 0.13
CACNA1A-223ENST00000636058 TDRD9Q8NDG6 1382 aaKnown RBP15.8■□□□□ 0.12
CACNA1A-223ENST00000636058 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
CACNA1A-223ENST00000636058 ZNF608Q9ULD9 1512 aaPredicted RBP15.79■□□□□ 0.12
CACNA1A-223ENST00000636058 GAPVD1Q14C86 1478 aa15.78■□□□□ 0.12
CACNA1A-223ENST00000636058 EIF4G3O43432 1585 aaKnown RBP15.76■□□□□ 0.11
CACNA1A-223ENST00000636058 IGF1RP08069 1367 aa15.75■□□□□ 0.11
CACNA1A-223ENST00000636058 ERICH3Q5RHP9 1530 aa15.75■□□□□ 0.11
CACNA1A-223ENST00000636058 AQRO60306 1485 aaKnown RBP eCLIP15.75■□□□□ 0.11
CACNA1A-223ENST00000636058 PBRM1Q86U86 1689 aa15.74■□□□□ 0.11
CACNA1A-223ENST00000636058 KIF21BO75037 1637 aa15.73■□□□□ 0.11
CACNA1A-223ENST00000636058 PRXQ9BXM0 1461 aa15.72■□□□□ 0.11
CACNA1A-223ENST00000636058 CUL7Q14999 1698 aa15.71■□□□□ 0.11
CACNA1A-223ENST00000636058 GRIN2BQ13224 1484 aa15.71■□□□□ 0.1
CACNA1A-223ENST00000636058 GOLGA3Q08378 1498 aa15.66■□□□□ 0.1
CACNA1A-223ENST00000636058 CARMIL1Q5VZK9 1371 aa15.66■□□□□ 0.1
CACNA1A-223ENST00000636058 LOC105371045A0A1W2PR82 267 aa15.66■□□□□ 0.1
CACNA1A-223ENST00000636058 RAPGEF2Q9Y4G8 1499 aa15.65■□□□□ 0.1
CACNA1A-223ENST00000636058 ADAMTS12P58397 1594 aa15.64■□□□□ 0.09
CACNA1A-223ENST00000636058 SNAPC4Q5SXM2 1469 aa15.63■□□□□ 0.09
CACNA1A-223ENST00000636058 MAGI1Q96QZ7 1491 aaPredicted RBP15.62■□□□□ 0.09
CACNA1A-223ENST00000636058 FHAD1B1AJZ9 1412 aa15.61■□□□□ 0.09
CACNA1A-223ENST00000636058 EHMT2Q96KQ7 1210 aa15.59■□□□□ 0.09
CACNA1A-223ENST00000636058 SYNJ2O15056 1496 aa15.56■□□□□ 0.08
CACNA1A-223ENST00000636058 TNIKQ9UKE5 1360 aa15.55■□□□□ 0.08
CACNA1A-223ENST00000636058 UBTFP17480 764 aaKnown RBP15.53■□□□□ 0.08
CACNA1A-223ENST00000636058 GRIN2AQ12879 1464 aa15.52■□□□□ 0.07
CACNA1A-223ENST00000636058 CTTNBP2Q8WZ74 1663 aa15.49■□□□□ 0.07
CACNA1A-223ENST00000636058 CHD1O14646 1710 aa15.47■□□□□ 0.07
CACNA1A-223ENST00000636058 CHMP7Q8WUX9 453 aaPredicted RBP15.47■□□□□ 0.07
CACNA1A-223ENST00000636058 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms