RNA–Protein interactions for RNA: ENST00000633534.1

PALM-211, Transcript of paralemmin, humanhuman

TSL 3

Gene PALM, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALM-211ENST00000633534 NISCHQ9Y2I1 1504 aa47.57■■■■■ 5.21
PALM-211ENST00000633534 CCDC180Q9P1Z9 1646 aa42.28■■■■■ 4.36
PALM-211ENST00000633534 ABCC9O60706 1549 aa41.36■■■■■ 4.21
PALM-211ENST00000633534 RB1CC1Q8TDY2 1594 aa39.79■■■■□ 3.96
PALM-211ENST00000633534 DCAF8L2P0C7V8 631 aa39.77■■■■□ 3.96
PALM-211ENST00000633534 NACADO15069 1562 aa39.75■■■■□ 3.95
PALM-211ENST00000633534 ZCCHC6Q5VYS8 1495 aaKnown RBP39.65■■■■□ 3.94
PALM-211ENST00000633534 MYO15BQ96JP2 1530 aa39.5■■■■□ 3.91
PALM-211ENST00000633534 DCAF1Q9Y4B6 1507 aa39.35■■■■□ 3.89
PALM-211ENST00000633534 UNC13AQ9UPW8 1703 aa38.8■■■■□ 3.8
PALM-211ENST00000633534 PABPN1Q86U42 306 aaKnown RBP eCLIP38.64■■■■□ 3.78
PALM-211ENST00000633534 SCRIBQ14160 1630 aa38.6■■■■□ 3.77
PALM-211ENST00000633534 BICRAQ9NZM4 1560 aa38.55■■■■□ 3.76
PALM-211ENST00000633534 SHROOM4Q9ULL8 1493 aa38.19■■■■□ 3.7
PALM-211ENST00000633534 DNAJC5BQ9UF47 199 aa37.86■■■■□ 3.65
PALM-211ENST00000633534 EIF4G1Q04637 1599 aaKnown RBP37.55■■■■□ 3.6
PALM-211ENST00000633534 CC2D2AQ9P2K1 1620 aa37.39■■■■□ 3.58
PALM-211ENST00000633534 CECR2Q9BXF3 1484 aa37.15■■■■□ 3.54
PALM-211ENST00000633534 SMARCA4P51532 1647 aa36.91■■■■□ 3.5
PALM-211ENST00000633534 BAZ1AQ9NRL2 1556 aaPredicted RBP36.89■■■■□ 3.5
PALM-211ENST00000633534 ATAD2BQ9ULI0 1458 aa36.7■■■■□ 3.47
PALM-211ENST00000633534 SMARCA2P51531 1590 aa36.68■■■■□ 3.46
PALM-211ENST00000633534 MROH2BQ7Z745 1585 aa36.66■■■■□ 3.46
PALM-211ENST00000633534 NCAPD3P42695 1498 aa36.66■■■■□ 3.46
PALM-211ENST00000633534 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
PALM-211ENST00000633534 HMGXB3Q12766 1538 aa36.51■■■■□ 3.44
PALM-211ENST00000633534 BAZ1BQ9UIG0 1483 aaKnown RBP36.43■■■■□ 3.42
PALM-211ENST00000633534 WIZO95785 1651 aa36.26■■■■□ 3.39
PALM-211ENST00000633534 RSF1Q96T23 1441 aaPredicted RBP36.25■■■■□ 3.39
PALM-211ENST00000633534 TOP2AP11388 1531 aaKnown RBP35.91■■■■□ 3.34
PALM-211ENST00000633534 NESP48681 1621 aa35.78■■■■□ 3.32
PALM-211ENST00000633534 LAMC3Q9Y6N6 1575 aa35.71■■■■□ 3.31
PALM-211ENST00000633534 ERCC6Q03468 1493 aa35.67■■■■□ 3.3
PALM-211ENST00000633534 CADPSQ9ULU8 1353 aa35.61■■■■□ 3.29
PALM-211ENST00000633534 PDS5BQ9NTI5 1447 aa35.48■■■■□ 3.27
PALM-211ENST00000633534 CCDC88BA6NC98 1476 aa35.47■■■■□ 3.27
PALM-211ENST00000633534 CFTRP13569 1480 aa35.41■■■■□ 3.26
PALM-211ENST00000633534 SUPT5HO00267 1087 aaKnown RBP35.4■■■■□ 3.26
PALM-211ENST00000633534 KIF21AQ7Z4S6 1674 aa35.34■■■■□ 3.25
PALM-211ENST00000633534 CUX2O14529 1486 aa35.25■■■■□ 3.23
PALM-211ENST00000633534 THOC2Q8NI27 1593 aaKnown RBP35.23■■■■□ 3.23
PALM-211ENST00000633534 FANCD2Q9BXW9 1451 aa35.22■■■■□ 3.23
PALM-211ENST00000633534 CEP164Q9UPV0 1460 aa35.19■■■■□ 3.22
PALM-211ENST00000633534 MRC2Q9UBG0 1479 aa35.12■■■■□ 3.21
PALM-211ENST00000633534 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
PALM-211ENST00000633534 WDR62O43379 1518 aa34.99■■■■□ 3.19
PALM-211ENST00000633534 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
PALM-211ENST00000633534 ABCC8Q09428 1581 aa34.65■■■■□ 3.14
PALM-211ENST00000633534 TOPBP1Q92547 1522 aa34.65■■■■□ 3.14
PALM-211ENST00000633534 DNMBPQ6XZF7 1577 aa34.62■■■■□ 3.13
PALM-211ENST00000633534 IFT140Q96RY7 1462 aa34.44■■■■□ 3.1
PALM-211ENST00000633534 CUX1P39880 1505 aa34.4■■■■□ 3.1
PALM-211ENST00000633534 POLA1P09884 1462 aaPredicted RBP34.36■■■■□ 3.09
PALM-211ENST00000633534 FGD5Q6ZNL6 1462 aa34.29■■■■□ 3.08
PALM-211ENST00000633534 ZNF608Q9ULD9 1512 aaPredicted RBP34.25■■■■□ 3.07
PALM-211ENST00000633534 TARBP1Q13395 1621 aaKnown RBP34.25■■■■□ 3.07
PALM-211ENST00000633534 SOGA1O94964 1423 aa34.22■■■■□ 3.07
PALM-211ENST00000633534 WRNQ14191 1432 aaPredicted RBP eCLIP34.21■■■■□ 3.07
PALM-211ENST00000633534 RAD54L2Q9Y4B4 1467 aa34.2■■■■□ 3.07
PALM-211ENST00000633534 EIF4G3O43432 1585 aaKnown RBP34.14■■■■□ 3.06
PALM-211ENST00000633534 TOP2BQ02880 1626 aa34.11■■■■□ 3.05
PALM-211ENST00000633534 SYNJ1O43426 1573 aa34.11■■■■□ 3.05
PALM-211ENST00000633534 BIVM-ERCC5R4GMW8 1640 aa34.1■■■■□ 3.05
PALM-211ENST00000633534 DNAJC5Q9H3Z4 198 aa34.08■■■■□ 3.05
PALM-211ENST00000633534 AQRO60306 1485 aaKnown RBP eCLIP34.07■■■■□ 3.057e-6■■□□□ 13.1
PALM-211ENST00000633534 TDRD9Q8NDG6 1382 aaKnown RBP34.02■■■■□ 3.04
PALM-211ENST00000633534 WDR97A6NE52 1622 aa34■■■■□ 3.03
PALM-211ENST00000633534 ABCA10Q8WWZ4 1543 aa33.95■■■■□ 3.03
PALM-211ENST00000633534 GRIN2BQ13224 1484 aa33.83■■■■□ 3.01
PALM-211ENST00000633534 GAPVD1Q14C86 1478 aa33.83■■■■□ 3.01
PALM-211ENST00000633534 ABCA5Q8WWZ7 1642 aa33.81■■■■□ 3
PALM-211ENST00000633534 OSCARQ8IYS5 282 aa33.79■■■■□ 3
PALM-211ENST00000633534 SNAPC4Q5SXM2 1469 aa33.78■■■■□ 3
PALM-211ENST00000633534 MAGI1Q96QZ7 1491 aaPredicted RBP33.74■■■□□ 2.99
PALM-211ENST00000633534 PBRM1Q86U86 1689 aa33.74■■■□□ 2.99
PALM-211ENST00000633534 FBLN2P98095 1184 aa33.69■■■□□ 2.98
PALM-211ENST00000633534 CHD1O14646 1710 aa33.67■■■□□ 2.98
PALM-211ENST00000633534 CHMP7Q8WUX9 453 aaPredicted RBP33.6■■■□□ 2.97
PALM-211ENST00000633534 SYNJ2O15056 1496 aa33.6■■■□□ 2.97
PALM-211ENST00000633534 ERICH3Q5RHP9 1530 aa33.55■■■□□ 2.96
PALM-211ENST00000633534 KIF27Q86VH2 1401 aa33.51■■■□□ 2.95
PALM-211ENST00000633534 ADAMTS12P58397 1594 aa33.5■■■□□ 2.95
PALM-211ENST00000633534 FHAD1B1AJZ9 1412 aa33.45■■■□□ 2.94
PALM-211ENST00000633534 TRIM41Q8WV44 630 aa33.44■■■□□ 2.94
PALM-211ENST00000633534 GRIN2AQ12879 1464 aa33.39■■■□□ 2.94
PALM-211ENST00000633534 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
PALM-211ENST00000633534 IGF1RP08069 1367 aa33.32■■■□□ 2.92
PALM-211ENST00000633534 CUL7Q14999 1698 aa33.26■■■□□ 2.91
PALM-211ENST00000633534 ARHGEF11O15085 1522 aa33.25■■■□□ 2.91
PALM-211ENST00000633534 RIMBP3CA6NJZ7 1639 aa33.24■■■□□ 2.91
PALM-211ENST00000633534 RIMBP3BA6NNM3 1639 aa33.24■■■□□ 2.91
PALM-211ENST00000633534 RIMBP3Q9UFD9 1639 aa33.24■■■□□ 2.91
PALM-211ENST00000633534 NUP160Q12769 1436 aa33.23■■■□□ 2.91
PALM-211ENST00000633534 CEP170Q5SW79 1584 aa33.21■■■□□ 2.91
PALM-211ENST00000633534 RUSC2Q8N2Y8 1516 aa33.17■■■□□ 2.9
PALM-211ENST00000633534 CARMIL1Q5VZK9 1371 aa33.15■■■□□ 2.9
PALM-211ENST00000633534 CHIC1Q5VXU3 224 aa33.02■■■□□ 2.88
PALM-211ENST00000633534 ARAP1Q96P48 1450 aa32.99■■■□□ 2.87
PALM-211ENST00000633534 RAPGEF2Q9Y4G8 1499 aa32.96■■■□□ 2.87
PALM-211ENST00000633534 SHROOM2Q13796 1616 aa32.95■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms