RNA–Protein interactions for RNA: ENST00000626299.2

SOX2-OT-238, SOX2 overlapping transcript, humanhuman

TSL 5

Gene SOX2-OT, Length 622 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-238ENST00000626299 NISCHQ9Y2I1 1504 aa32.97■■■□□ 2.87
SOX2-OT-238ENST00000626299 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
SOX2-OT-238ENST00000626299 ABCC9O60706 1549 aa28.6■■■□□ 2.17
SOX2-OT-238ENST00000626299 ZCCHC6Q5VYS8 1495 aaKnown RBP27.5■■□□□ 1.99
SOX2-OT-238ENST00000626299 RB1CC1Q8TDY2 1594 aa27.49■■□□□ 1.99
SOX2-OT-238ENST00000626299 DCAF8L2P0C7V8 631 aa27.49■■□□□ 1.99
SOX2-OT-238ENST00000626299 NACADO15069 1562 aa27.48■■□□□ 1.99
SOX2-OT-238ENST00000626299 MYO15BQ96JP2 1530 aa27.36■■□□□ 1.97
SOX2-OT-238ENST00000626299 DCAF1Q9Y4B6 1507 aa27.26■■□□□ 1.96
SOX2-OT-238ENST00000626299 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
SOX2-OT-238ENST00000626299 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
SOX2-OT-238ENST00000626299 SCRIBQ14160 1630 aa26.72■■□□□ 1.87
SOX2-OT-238ENST00000626299 BICRAQ9NZM4 1560 aa26.71■■□□□ 1.87
SOX2-OT-238ENST00000626299 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
SOX2-OT-238ENST00000626299 DNAJC5BQ9UF47 199 aa26.23■■□□□ 1.79
SOX2-OT-238ENST00000626299 EIF4G1Q04637 1599 aaKnown RBP25.99■■□□□ 1.75
SOX2-OT-238ENST00000626299 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
SOX2-OT-238ENST00000626299 CECR2Q9BXF3 1484 aa25.71■■□□□ 1.71
SOX2-OT-238ENST00000626299 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
SOX2-OT-238ENST00000626299 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
SOX2-OT-238ENST00000626299 MROH2BQ7Z745 1585 aa25.43■■□□□ 1.66
SOX2-OT-238ENST00000626299 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
SOX2-OT-238ENST00000626299 NCAPD3P42695 1498 aa25.39■■□□□ 1.65
SOX2-OT-238ENST00000626299 SMARCA2P51531 1590 aa25.35■■□□□ 1.65
SOX2-OT-238ENST00000626299 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
SOX2-OT-238ENST00000626299 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
SOX2-OT-238ENST00000626299 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
SOX2-OT-238ENST00000626299 RSF1Q96T23 1441 aaPredicted RBP25.17■■□□□ 1.62
SOX2-OT-238ENST00000626299 WIZO95785 1651 aa25.12■■□□□ 1.61
SOX2-OT-238ENST00000626299 TOP2AP11388 1531 aaKnown RBP24.87■■□□□ 1.57
SOX2-OT-238ENST00000626299 NESP48681 1621 aa24.79■■□□□ 1.56
SOX2-OT-238ENST00000626299 LAMC3Q9Y6N6 1575 aa24.67■■□□□ 1.54
SOX2-OT-238ENST00000626299 CADPSQ9ULU8 1353 aa24.66■■□□□ 1.54
SOX2-OT-238ENST00000626299 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
SOX2-OT-238ENST00000626299 CCDC88BA6NC98 1476 aa24.59■■□□□ 1.53
SOX2-OT-238ENST00000626299 SUPT5HO00267 1087 aaKnown RBP24.54■■□□□ 1.52
SOX2-OT-238ENST00000626299 CFTRP13569 1480 aa24.53■■□□□ 1.52
SOX2-OT-238ENST00000626299 PDS5BQ9NTI5 1447 aa24.52■■□□□ 1.52
SOX2-OT-238ENST00000626299 KIF21AQ7Z4S6 1674 aa24.43■■□□□ 1.5
SOX2-OT-238ENST00000626299 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
SOX2-OT-238ENST00000626299 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
SOX2-OT-238ENST00000626299 CUX2O14529 1486 aa24.34■■□□□ 1.49
SOX2-OT-238ENST00000626299 CEP164Q9UPV0 1460 aa24.32■■□□□ 1.48
SOX2-OT-238ENST00000626299 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
SOX2-OT-238ENST00000626299 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
SOX2-OT-238ENST00000626299 WDR62O43379 1518 aa24.2■■□□□ 1.47
SOX2-OT-238ENST00000626299 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
SOX2-OT-238ENST00000626299 TOPBP1Q92547 1522 aa24■■□□□ 1.43
SOX2-OT-238ENST00000626299 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.43
SOX2-OT-238ENST00000626299 ABCC8Q09428 1581 aa23.94■■□□□ 1.42
SOX2-OT-238ENST00000626299 CUX1P39880 1505 aa23.84■■□□□ 1.41
SOX2-OT-238ENST00000626299 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
SOX2-OT-238ENST00000626299 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
SOX2-OT-238ENST00000626299 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
SOX2-OT-238ENST00000626299 ZNF608Q9ULD9 1512 aaPredicted RBP23.74■■□□□ 1.39
SOX2-OT-238ENST00000626299 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
SOX2-OT-238ENST00000626299 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
SOX2-OT-238ENST00000626299 WRNQ14191 1432 aaPredicted RBP eCLIP23.7■■□□□ 1.38
SOX2-OT-238ENST00000626299 SOGA1O94964 1423 aa23.68■■□□□ 1.38
SOX2-OT-238ENST00000626299 SYNJ1O43426 1573 aa23.65■■□□□ 1.38
SOX2-OT-238ENST00000626299 TOP2BQ02880 1626 aa23.62■■□□□ 1.37
SOX2-OT-238ENST00000626299 EIF4G3O43432 1585 aaKnown RBP23.61■■□□□ 1.37
SOX2-OT-238ENST00000626299 BIVM-ERCC5R4GMW8 1640 aa23.61■■□□□ 1.37
SOX2-OT-238ENST00000626299 AQRO60306 1485 aaKnown RBP eCLIP23.59■■□□□ 1.37
SOX2-OT-238ENST00000626299 TDRD9Q8NDG6 1382 aaKnown RBP23.57■■□□□ 1.36
SOX2-OT-238ENST00000626299 DNAJC5Q9H3Z4 198 aa23.53■■□□□ 1.36
SOX2-OT-238ENST00000626299 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
SOX2-OT-238ENST00000626299 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
SOX2-OT-238ENST00000626299 GAPVD1Q14C86 1478 aa23.42■■□□□ 1.34
SOX2-OT-238ENST00000626299 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
SOX2-OT-238ENST00000626299 GRIN2BQ13224 1484 aa23.4■■□□□ 1.34
SOX2-OT-238ENST00000626299 SNAPC4Q5SXM2 1469 aa23.38■■□□□ 1.33
SOX2-OT-238ENST00000626299 OSCARQ8IYS5 282 aa23.33■■□□□ 1.33
SOX2-OT-238ENST00000626299 MAGI1Q96QZ7 1491 aaPredicted RBP23.32■■□□□ 1.32
SOX2-OT-238ENST00000626299 PBRM1Q86U86 1689 aa23.32■■□□□ 1.32
SOX2-OT-238ENST00000626299 FBLN2P98095 1184 aa23.27■■□□□ 1.32
SOX2-OT-238ENST00000626299 CHD1O14646 1710 aa23.25■■□□□ 1.31
SOX2-OT-238ENST00000626299 SYNJ2O15056 1496 aa23.24■■□□□ 1.31
SOX2-OT-238ENST00000626299 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
SOX2-OT-238ENST00000626299 CHMP7Q8WUX9 453 aaPredicted RBP23.21■■□□□ 1.31
SOX2-OT-238ENST00000626299 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
SOX2-OT-238ENST00000626299 KIF27Q86VH2 1401 aa23.18■■□□□ 1.3
SOX2-OT-238ENST00000626299 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
SOX2-OT-238ENST00000626299 FHAD1B1AJZ9 1412 aa23.15■■□□□ 1.3
SOX2-OT-238ENST00000626299 IGF1RP08069 1367 aa23.12■■□□□ 1.29
SOX2-OT-238ENST00000626299 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
SOX2-OT-238ENST00000626299 CLASP1Q7Z460 1538 aa23.07■■□□□ 1.28
SOX2-OT-238ENST00000626299 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
SOX2-OT-238ENST00000626299 NUP160Q12769 1436 aa23.02■■□□□ 1.28
SOX2-OT-238ENST00000626299 CEP170Q5SW79 1584 aa23■■□□□ 1.27
SOX2-OT-238ENST00000626299 CUL7Q14999 1698 aa22.99■■□□□ 1.27
SOX2-OT-238ENST00000626299 ARHGEF11O15085 1522 aa22.98■■□□□ 1.27
SOX2-OT-238ENST00000626299 CHIC1Q5VXU3 224 aa22.96■■□□□ 1.27
SOX2-OT-238ENST00000626299 CARMIL1Q5VZK9 1371 aa22.96■■□□□ 1.27
SOX2-OT-238ENST00000626299 RIMBP3CA6NJZ7 1639 aa22.96■■□□□ 1.27
SOX2-OT-238ENST00000626299 RIMBP3BA6NNM3 1639 aa22.96■■□□□ 1.27
SOX2-OT-238ENST00000626299 RIMBP3Q9UFD9 1639 aa22.96■■□□□ 1.27
SOX2-OT-238ENST00000626299 ARAP1Q96P48 1450 aa22.83■■□□□ 1.25
SOX2-OT-238ENST00000626299 RAPGEF2Q9Y4G8 1499 aa22.83■■□□□ 1.25
SOX2-OT-238ENST00000626299 SHROOM2Q13796 1616 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms