RNA–Protein interactions for RNA: ENST00000626274.2

PNKP-219, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 2

Gene PNKP, Length 752 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-219ENST00000626274 NISCHQ9Y2I1 1504 aa48.52■■■■■ 5.36
PNKP-219ENST00000626274 CCDC180Q9P1Z9 1646 aa43.16■■■■■ 4.5
PNKP-219ENST00000626274 ABCC9O60706 1549 aa42.17■■■■■ 4.34
PNKP-219ENST00000626274 RB1CC1Q8TDY2 1594 aa40.61■■■■■ 4.09
PNKP-219ENST00000626274 NACADO15069 1562 aa40.57■■■■■ 4.08
PNKP-219ENST00000626274 DCAF8L2P0C7V8 631 aa40.54■■■■■ 4.08
PNKP-219ENST00000626274 ZCCHC6Q5VYS8 1495 aaKnown RBP40.41■■■■■ 4.06
PNKP-219ENST00000626274 MYO15BQ96JP2 1530 aa40.32■■■■■ 4.04
PNKP-219ENST00000626274 DCAF1Q9Y4B6 1507 aa40.16■■■■■ 4.02
PNKP-219ENST00000626274 UNC13AQ9UPW8 1703 aa39.73■■■■□ 3.95
PNKP-219ENST00000626274 PABPN1Q86U42 306 aaKnown RBP eCLIP39.41■■■■□ 3.9
PNKP-219ENST00000626274 BICRAQ9NZM4 1560 aa39.36■■■■□ 3.89
PNKP-219ENST00000626274 SCRIBQ14160 1630 aa39.35■■■■□ 3.89
PNKP-219ENST00000626274 SHROOM4Q9ULL8 1493 aa38.96■■■■□ 3.83
PNKP-219ENST00000626274 DNAJC5BQ9UF47 199 aa38.68■■■■□ 3.78
PNKP-219ENST00000626274 EIF4G1Q04637 1599 aaKnown RBP38.32■■■■□ 3.73
PNKP-219ENST00000626274 CC2D2AQ9P2K1 1620 aa38.17■■■■□ 3.7
PNKP-219ENST00000626274 CECR2Q9BXF3 1484 aa37.9■■■■□ 3.66
PNKP-219ENST00000626274 SMARCA4P51532 1647 aa37.65■■■■□ 3.62
PNKP-219ENST00000626274 BAZ1AQ9NRL2 1556 aaPredicted RBP37.62■■■■□ 3.61
PNKP-219ENST00000626274 ATAD2BQ9ULI0 1458 aa37.43■■■■□ 3.58
PNKP-219ENST00000626274 NCAPD3P42695 1498 aa37.41■■■■□ 3.58
PNKP-219ENST00000626274 SMARCA2P51531 1590 aa37.41■■■■□ 3.58
PNKP-219ENST00000626274 MROH2BQ7Z745 1585 aa37.39■■■■□ 3.58
PNKP-219ENST00000626274 PEG3Q9GZU2 1588 aa37.28■■■■□ 3.56
PNKP-219ENST00000626274 HMGXB3Q12766 1538 aa37.23■■■■□ 3.55
PNKP-219ENST00000626274 BAZ1BQ9UIG0 1483 aaKnown RBP37.13■■■■□ 3.53
PNKP-219ENST00000626274 WIZO95785 1651 aa37.01■■■■□ 3.52
PNKP-219ENST00000626274 RSF1Q96T23 1441 aaPredicted RBP36.96■■■■□ 3.51
PNKP-219ENST00000626274 TOP2AP11388 1531 aaKnown RBP36.6■■■■□ 3.45
PNKP-219ENST00000626274 NESP48681 1621 aa36.5■■■■□ 3.43
PNKP-219ENST00000626274 LAMC3Q9Y6N6 1575 aa36.44■■■■□ 3.42
PNKP-219ENST00000626274 ERCC6Q03468 1493 aa36.37■■■■□ 3.41
PNKP-219ENST00000626274 CADPSQ9ULU8 1353 aa36.32■■■■□ 3.4
PNKP-219ENST00000626274 PDS5BQ9NTI5 1447 aa36.18■■■■□ 3.38
PNKP-219ENST00000626274 CCDC88BA6NC98 1476 aa36.17■■■■□ 3.38
PNKP-219ENST00000626274 CFTRP13569 1480 aa36.11■■■■□ 3.37
PNKP-219ENST00000626274 KIF21AQ7Z4S6 1674 aa36.1■■■■□ 3.37
PNKP-219ENST00000626274 SUPT5HO00267 1087 aaKnown RBP36.06■■■■□ 3.36
PNKP-219ENST00000626274 CUX2O14529 1486 aa35.97■■■■□ 3.35
PNKP-219ENST00000626274 THOC2Q8NI27 1593 aaKnown RBP35.95■■■■□ 3.35
PNKP-219ENST00000626274 FANCD2Q9BXW9 1451 aa35.91■■■■□ 3.34
PNKP-219ENST00000626274 PRDM2Q13029 1718 aa35.91■■■■□ 3.34
PNKP-219ENST00000626274 CEP164Q9UPV0 1460 aa35.86■■■■□ 3.33
PNKP-219ENST00000626274 MRC2Q9UBG0 1479 aa35.81■■■■□ 3.32
PNKP-219ENST00000626274 WDR62O43379 1518 aa35.69■■■■□ 3.3
PNKP-219ENST00000626274 URB2Q14146 1524 aaKnown RBP35.54■■■■□ 3.28
PNKP-219ENST00000626274 ABCC8Q09428 1581 aa35.37■■■■□ 3.25
PNKP-219ENST00000626274 TOPBP1Q92547 1522 aa35.34■■■■□ 3.25
PNKP-219ENST00000626274 DNMBPQ6XZF7 1577 aa35.3■■■■□ 3.24
PNKP-219ENST00000626274 IFT140Q96RY7 1462 aa35.11■■■■□ 3.21
PNKP-219ENST00000626274 CUX1P39880 1505 aa35.07■■■■□ 3.21
PNKP-219ENST00000626274 POLA1P09884 1462 aaPredicted RBP35.03■■■■□ 3.2
PNKP-219ENST00000626274 FGD5Q6ZNL6 1462 aa34.96■■■■□ 3.19
PNKP-219ENST00000626274 TARBP1Q13395 1621 aaKnown RBP34.95■■■■□ 3.19
PNKP-219ENST00000626274 ZNF608Q9ULD9 1512 aaPredicted RBP34.93■■■■□ 3.18
PNKP-219ENST00000626274 SOGA1O94964 1423 aa34.9■■■■□ 3.18
PNKP-219ENST00000626274 RAD54L2Q9Y4B4 1467 aa34.88■■■■□ 3.17
PNKP-219ENST00000626274 WRNQ14191 1432 aaPredicted RBP eCLIP34.87■■■■□ 3.17
PNKP-219ENST00000626274 DNAJC5Q9H3Z4 198 aa34.84■■■■□ 3.17
PNKP-219ENST00000626274 EIF4G3O43432 1585 aaKnown RBP34.82■■■■□ 3.16
PNKP-219ENST00000626274 BIVM-ERCC5R4GMW8 1640 aa34.8■■■■□ 3.16
PNKP-219ENST00000626274 TOP2BQ02880 1626 aa34.79■■■■□ 3.16
PNKP-219ENST00000626274 SYNJ1O43426 1573 aa34.77■■■■□ 3.16
PNKP-219ENST00000626274 AQRO60306 1485 aaKnown RBP eCLIP34.75■■■■□ 3.151e-7■■■■□ 26.3
PNKP-219ENST00000626274 WDR97A6NE52 1622 aa34.7■■■■□ 3.15
PNKP-219ENST00000626274 TDRD9Q8NDG6 1382 aaKnown RBP34.69■■■■□ 3.14
PNKP-219ENST00000626274 ABCA10Q8WWZ4 1543 aa34.62■■■■□ 3.13
PNKP-219ENST00000626274 OSCARQ8IYS5 282 aa34.5■■■■□ 3.11
PNKP-219ENST00000626274 GAPVD1Q14C86 1478 aa34.5■■■■□ 3.11
PNKP-219ENST00000626274 ABCA5Q8WWZ7 1642 aa34.49■■■■□ 3.11
PNKP-219ENST00000626274 GRIN2BQ13224 1484 aa34.49■■■■□ 3.11
PNKP-219ENST00000626274 PBRM1Q86U86 1689 aa34.46■■■■□ 3.11
PNKP-219ENST00000626274 SNAPC4Q5SXM2 1469 aa34.43■■■■□ 3.1
PNKP-219ENST00000626274 CHD1O14646 1710 aa34.41■■■■□ 3.1
PNKP-219ENST00000626274 MAGI1Q96QZ7 1491 aaPredicted RBP34.4■■■■□ 3.1
PNKP-219ENST00000626274 FBLN2P98095 1184 aa34.34■■■■□ 3.09
PNKP-219ENST00000626274 SYNJ2O15056 1496 aa34.27■■■■□ 3.08
PNKP-219ENST00000626274 CHMP7Q8WUX9 453 aaPredicted RBP34.26■■■■□ 3.08
PNKP-219ENST00000626274 ERICH3Q5RHP9 1530 aa34.21■■■■□ 3.07
PNKP-219ENST00000626274 ADAMTS12P58397 1594 aa34.15■■■■□ 3.06
PNKP-219ENST00000626274 KIF27Q86VH2 1401 aa34.14■■■■□ 3.06
PNKP-219ENST00000626274 FHAD1B1AJZ9 1412 aa34.1■■■■□ 3.05
PNKP-219ENST00000626274 TRIM41Q8WV44 630 aa34.06■■■■□ 3.04
PNKP-219ENST00000626274 GRIN2AQ12879 1464 aa34.05■■■■□ 3.04
PNKP-219ENST00000626274 CLASP1Q7Z460 1538 aa34■■■■□ 3.03
PNKP-219ENST00000626274 IGF1RP08069 1367 aa33.98■■■■□ 3.03
PNKP-219ENST00000626274 RIMBP3CA6NJZ7 1639 aa33.94■■■■□ 3.02
PNKP-219ENST00000626274 RIMBP3BA6NNM3 1639 aa33.94■■■■□ 3.02
PNKP-219ENST00000626274 RIMBP3Q9UFD9 1639 aa33.94■■■■□ 3.02
PNKP-219ENST00000626274 CUL7Q14999 1698 aa33.93■■■■□ 3.02
PNKP-219ENST00000626274 ARHGEF11O15085 1522 aa33.92■■■■□ 3.02
PNKP-219ENST00000626274 NUP160Q12769 1436 aa33.88■■■■□ 3.01
PNKP-219ENST00000626274 CEP170Q5SW79 1584 aa33.88■■■■□ 3.01
PNKP-219ENST00000626274 RUSC2Q8N2Y8 1516 aa33.82■■■■□ 3
PNKP-219ENST00000626274 CARMIL1Q5VZK9 1371 aa33.79■■■■□ 3
PNKP-219ENST00000626274 SHROOM2Q13796 1616 aa33.65■■■□□ 2.98
PNKP-219ENST00000626274 CHIC1Q5VXU3 224 aa33.65■■■□□ 2.98
PNKP-219ENST00000626274 ARAP1Q96P48 1450 aa33.64■■■□□ 2.98
PNKP-219ENST00000626274 CYB5RLQ6IPT4 315 aa33.62■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms