RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 NISCHQ9Y2I1 1504 aa36.26■■■■□ 3.39
LDB3-208ENST00000623007 CCDC180Q9P1Z9 1646 aa31.62■■■□□ 2.65
LDB3-208ENST00000623007 ZCCHC6Q5VYS8 1495 aaKnown RBP30.53■■■□□ 2.48
LDB3-208ENST00000623007 DCAF1Q9Y4B6 1507 aa30.15■■■□□ 2.42
LDB3-208ENST00000623007 MYO15BQ96JP2 1530 aa29.74■■■□□ 2.35
LDB3-208ENST00000623007 DCAF8L2P0C7V8 631 aa29.63■■■□□ 2.33
LDB3-208ENST00000623007 SHROOM4Q9ULL8 1493 aa29.49■■■□□ 2.31
LDB3-208ENST00000623007 NACADO15069 1562 aa29.37■■■□□ 2.29
LDB3-208ENST00000623007 ABCC9O60706 1549 aa29.33■■■□□ 2.29
LDB3-208ENST00000623007 RB1CC1Q8TDY2 1594 aa29.01■■■□□ 2.23
LDB3-208ENST00000623007 SCRIBQ14160 1630 aa28.86■■■□□ 2.21
LDB3-208ENST00000623007 SUPT5HO00267 1087 aaKnown RBP28.61■■■□□ 2.17
LDB3-208ENST00000623007 UNC13AQ9UPW8 1703 aa28.27■■■□□ 2.12
LDB3-208ENST00000623007 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
LDB3-208ENST00000623007 BAZ1AQ9NRL2 1556 aaPredicted RBP28.06■■■□□ 2.08
LDB3-208ENST00000623007 CECR2Q9BXF3 1484 aa27.97■■■□□ 2.07
LDB3-208ENST00000623007 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.07
LDB3-208ENST00000623007 MROH2BQ7Z745 1585 aa27.9■■■□□ 2.06
LDB3-208ENST00000623007 SMARCA4P51532 1647 aa27.8■■■□□ 2.04
LDB3-208ENST00000623007 WIZO95785 1651 aa27.69■■■□□ 2.02
LDB3-208ENST00000623007 PABPN1Q86U42 306 aaKnown RBP eCLIP27.63■■■□□ 2.01
LDB3-208ENST00000623007 CHIC1Q5VXU3 224 aa27.62■■■□□ 2.01
LDB3-208ENST00000623007 TOP2AP11388 1531 aaKnown RBP27.56■■■□□ 2
LDB3-208ENST00000623007 PEG3Q9GZU2 1588 aa27.55■■■□□ 2
LDB3-208ENST00000623007 SMARCA2P51531 1590 aa27.38■■□□□ 1.97
LDB3-208ENST00000623007 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
LDB3-208ENST00000623007 CCDC88BA6NC98 1476 aa27.18■■□□□ 1.94
LDB3-208ENST00000623007 BAZ1BQ9UIG0 1483 aaKnown RBP27.15■■□□□ 1.94
LDB3-208ENST00000623007 EIF4G1Q04637 1599 aaKnown RBP27.15■■□□□ 1.94
LDB3-208ENST00000623007 HMGXB3Q12766 1538 aa27.07■■□□□ 1.92
LDB3-208ENST00000623007 NCAPD3P42695 1498 aa27.05■■□□□ 1.92
LDB3-208ENST00000623007 TRIM41Q8WV44 630 aa27.04■■□□□ 1.92
LDB3-208ENST00000623007 DNAJC5BQ9UF47 199 aa26.95■■□□□ 1.91
LDB3-208ENST00000623007 CC2D2AQ9P2K1 1620 aa26.63■■□□□ 1.85
LDB3-208ENST00000623007 ABCC8Q09428 1581 aa26.61■■□□□ 1.85
LDB3-208ENST00000623007 WRNQ14191 1432 aaPredicted RBP eCLIP26.58■■□□□ 1.85
LDB3-208ENST00000623007 EEA1Q15075 1411 aa26.55■■□□□ 1.84
LDB3-208ENST00000623007 CFTRP13569 1480 aa26.5■■□□□ 1.83
LDB3-208ENST00000623007 PRDM2Q13029 1718 aa26.46■■□□□ 1.83
LDB3-208ENST00000623007 LOC105371045A0A1W2PR82 267 aa26.42■■□□□ 1.82
LDB3-208ENST00000623007 TOP2BQ02880 1626 aa26.35■■□□□ 1.81
LDB3-208ENST00000623007 SYNJ1O43426 1573 aa26.35■■□□□ 1.81
LDB3-208ENST00000623007 CADPSQ9ULU8 1353 aa26.33■■□□□ 1.81
LDB3-208ENST00000623007 BIVM-ERCC5R4GMW8 1640 aa26.33■■□□□ 1.81
LDB3-208ENST00000623007 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.81
LDB3-208ENST00000623007 SOGA1O94964 1423 aa26.19■■□□□ 1.78
LDB3-208ENST00000623007 CSRNP3Q8WYN3 585 aa26.18■■□□□ 1.78
LDB3-208ENST00000623007 LAMC3Q9Y6N6 1575 aa26.12■■□□□ 1.77
LDB3-208ENST00000623007 CUX1P39880 1505 aa26.1■■□□□ 1.77
LDB3-208ENST00000623007 KIF21BO75037 1637 aa26.06■■□□□ 1.76
LDB3-208ENST00000623007 GOLGA3Q08378 1498 aa26.06■■□□□ 1.76
LDB3-208ENST00000623007 CEP164Q9UPV0 1460 aa26.06■■□□□ 1.76
LDB3-208ENST00000623007 TNIKQ9UKE5 1360 aa26.03■■□□□ 1.76
LDB3-208ENST00000623007 FANCD2Q9BXW9 1451 aa26.01■■□□□ 1.75
LDB3-208ENST00000623007 RUSC2Q8N2Y8 1516 aa26■■□□□ 1.75
LDB3-208ENST00000623007 KIF27Q86VH2 1401 aa25.95■■□□□ 1.74
LDB3-208ENST00000623007 PDS5BQ9NTI5 1447 aa25.9■■□□□ 1.74
LDB3-208ENST00000623007 DNMBPQ6XZF7 1577 aa25.89■■□□□ 1.74
LDB3-208ENST00000623007 ERICH3Q5RHP9 1530 aa25.88■■□□□ 1.73
LDB3-208ENST00000623007 UBTFP17480 764 aaKnown RBP25.83■■□□□ 1.73
LDB3-208ENST00000623007 CEP162Q5TB80 1403 aa25.83■■□□□ 1.72
LDB3-208ENST00000623007 FGD5Q6ZNL6 1462 aa25.8■■□□□ 1.72
LDB3-208ENST00000623007 NESP48681 1621 aa25.8■■□□□ 1.72
LDB3-208ENST00000623007 EHMT2Q96KQ7 1210 aa25.79■■□□□ 1.72
LDB3-208ENST00000623007 PRXQ9BXM0 1461 aa25.78■■□□□ 1.72
LDB3-208ENST00000623007 TRIM26Q12899 539 aaPredicted RBP25.76■■□□□ 1.71
LDB3-208ENST00000623007 TOPBP1Q92547 1522 aa25.76■■□□□ 1.71
LDB3-208ENST00000623007 CUX2O14529 1486 aa25.69■■□□□ 1.7
LDB3-208ENST00000623007 RAPGEF2Q9Y4G8 1499 aa25.69■■□□□ 1.7
LDB3-208ENST00000623007 ABCA10Q8WWZ4 1543 aa25.67■■□□□ 1.7
LDB3-208ENST00000623007 POLA1P09884 1462 aaPredicted RBP25.64■■□□□ 1.69
LDB3-208ENST00000623007 PCGF6Q9BYE7 350 aa25.63■■□□□ 1.69
LDB3-208ENST00000623007 URB2Q14146 1524 aaKnown RBP25.6■■□□□ 1.69
LDB3-208ENST00000623007 CLIP1P30622 1438 aa25.59■■□□□ 1.69
LDB3-208ENST00000623007 KIF21AQ7Z4S6 1674 aa25.59■■□□□ 1.69
LDB3-208ENST00000623007 IGF1RP08069 1367 aa25.57■■□□□ 1.68
LDB3-208ENST00000623007 WDR97A6NE52 1622 aa25.51■■□□□ 1.67
LDB3-208ENST00000623007 CUL7Q14999 1698 aa25.5■■□□□ 1.67
LDB3-208ENST00000623007 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
LDB3-208ENST00000623007 CARMIL1Q5VZK9 1371 aa25.49■■□□□ 1.67
LDB3-208ENST00000623007 VPS8Q8N3P4 1428 aa25.45■■□□□ 1.66
LDB3-208ENST00000623007 RAD54L2Q9Y4B4 1467 aa25.45■■□□□ 1.66
LDB3-208ENST00000623007 ABCA5Q8WWZ7 1642 aa25.39■■□□□ 1.66
LDB3-208ENST00000623007 WDR62O43379 1518 aa25.35■■□□□ 1.65
LDB3-208ENST00000623007 TARBP1Q13395 1621 aaKnown RBP25.34■■□□□ 1.65
LDB3-208ENST00000623007 GAPVD1Q14C86 1478 aa25.33■■□□□ 1.64
LDB3-208ENST00000623007 APLP2Q06481 763 aa25.29■■□□□ 1.64
LDB3-208ENST00000623007 IFT140Q96RY7 1462 aa25.27■■□□□ 1.64
LDB3-208ENST00000623007 HRCP23327 699 aa25.25■■□□□ 1.63
LDB3-208ENST00000623007 ERCC6Q03468 1493 aa25.25■■□□□ 1.63
LDB3-208ENST00000623007 ARAP1Q96P48 1450 aa25.23■■□□□ 1.63
LDB3-208ENST00000623007 ARHGAP35Q9NRY4 1499 aa25.19■■□□□ 1.62
LDB3-208ENST00000623007 CTTNBP2Q8WZ74 1663 aa25.19■■□□□ 1.62
LDB3-208ENST00000623007 TDRD9Q8NDG6 1382 aaKnown RBP25.19■■□□□ 1.62
LDB3-208ENST00000623007 EFCAB5A4FU69 1503 aa25.19■■□□□ 1.62
LDB3-208ENST00000623007 PBRM1Q86U86 1689 aa25.16■■□□□ 1.62
LDB3-208ENST00000623007 THOC2Q8NI27 1593 aaKnown RBP25.13■■□□□ 1.61
LDB3-208ENST00000623007 GRIN2BQ13224 1484 aa25.13■■□□□ 1.61
LDB3-208ENST00000623007 FHAD1B1AJZ9 1412 aa25.12■■□□□ 1.61
LDB3-208ENST00000623007 MAP3K1Q13233 1512 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms