RNA–Protein interactions for RNA: ENST00000622755.4

CBWD3-218, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 1,413 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-218ENST00000622755 NISCHQ9Y2I1 1504 aa29.91■■■□□ 2.38
CBWD3-218ENST00000622755 CCDC180Q9P1Z9 1646 aa26.74■■□□□ 1.87
CBWD3-218ENST00000622755 ABCC9O60706 1549 aa26.23■■□□□ 1.79
CBWD3-218ENST00000622755 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
CBWD3-218ENST00000622755 NACADO15069 1562 aa25.16■■□□□ 1.62
CBWD3-218ENST00000622755 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
CBWD3-218ENST00000622755 MYO15BQ96JP2 1530 aa24.93■■□□□ 1.58
CBWD3-218ENST00000622755 ZCCHC6Q5VYS8 1495 aaKnown RBP24.87■■□□□ 1.57
CBWD3-218ENST00000622755 DCAF1Q9Y4B6 1507 aa24.76■■□□□ 1.55
CBWD3-218ENST00000622755 UNC13AQ9UPW8 1703 aa24.59■■□□□ 1.53
CBWD3-218ENST00000622755 PABPN1Q86U42 306 aaKnown RBP eCLIP24.45■■□□□ 1.51
CBWD3-218ENST00000622755 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
CBWD3-218ENST00000622755 BICRAQ9NZM4 1560 aa24.33■■□□□ 1.49
CBWD3-218ENST00000622755 SHROOM4Q9ULL8 1493 aa24.23■■□□□ 1.47
CBWD3-218ENST00000622755 DNAJC5BQ9UF47 199 aa24.04■■□□□ 1.44
CBWD3-218ENST00000622755 EIF4G1Q04637 1599 aaKnown RBP23.79■■□□□ 1.4
CBWD3-218ENST00000622755 CC2D2AQ9P2K1 1620 aa23.73■■□□□ 1.39
CBWD3-218ENST00000622755 CECR2Q9BXF3 1484 aa23.6■■□□□ 1.37
CBWD3-218ENST00000622755 BAZ1AQ9NRL2 1556 aaPredicted RBP23.26■■□□□ 1.31
CBWD3-218ENST00000622755 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
CBWD3-218ENST00000622755 SMARCA2P51531 1590 aa23.2■■□□□ 1.3
CBWD3-218ENST00000622755 NCAPD3P42695 1498 aa23.16■■□□□ 1.3
CBWD3-218ENST00000622755 ATAD2BQ9ULI0 1458 aa23.14■■□□□ 1.29
CBWD3-218ENST00000622755 HMGXB3Q12766 1538 aa23.07■■□□□ 1.28
CBWD3-218ENST00000622755 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
CBWD3-218ENST00000622755 PEG3Q9GZU2 1588 aa23.01■■□□□ 1.27
CBWD3-218ENST00000622755 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
CBWD3-218ENST00000622755 AEBP2Q6ZN18 517 aaPredicted RBP22.95■■□□□ 1.26
CBWD3-218ENST00000622755 WIZO95785 1651 aa22.79■■□□□ 1.24
CBWD3-218ENST00000622755 ERCC6Q03468 1493 aa22.73■■□□□ 1.23
CBWD3-218ENST00000622755 RSF1Q96T23 1441 aaPredicted RBP22.7■■□□□ 1.22
CBWD3-218ENST00000622755 LAMC3Q9Y6N6 1575 aa22.65■■□□□ 1.22
CBWD3-218ENST00000622755 NESP48681 1621 aa22.6■■□□□ 1.21
CBWD3-218ENST00000622755 TOP2AP11388 1531 aaKnown RBP22.57■■□□□ 1.2
CBWD3-218ENST00000622755 PDS5BQ9NTI5 1447 aa22.52■■□□□ 1.2
CBWD3-218ENST00000622755 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
CBWD3-218ENST00000622755 CUX2O14529 1486 aa22.49■■□□□ 1.19
CBWD3-218ENST00000622755 KIF21AQ7Z4S6 1674 aa22.4■■□□□ 1.18
CBWD3-218ENST00000622755 THOC2Q8NI27 1593 aaKnown RBP22.33■■□□□ 1.17
CBWD3-218ENST00000622755 CFTRP13569 1480 aa22.31■■□□□ 1.16
CBWD3-218ENST00000622755 CEP164Q9UPV0 1460 aa22.28■■□□□ 1.16
CBWD3-218ENST00000622755 CCDC88BA6NC98 1476 aa22.26■■□□□ 1.15
CBWD3-218ENST00000622755 FANCD2Q9BXW9 1451 aa22.25■■□□□ 1.15
CBWD3-218ENST00000622755 MRC2Q9UBG0 1479 aa22.25■■□□□ 1.15
CBWD3-218ENST00000622755 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
CBWD3-218ENST00000622755 WDR62O43379 1518 aa22.15■■□□□ 1.14
CBWD3-218ENST00000622755 SUPT5HO00267 1087 aaKnown RBP22.11■■□□□ 1.13
CBWD3-218ENST00000622755 URB2Q14146 1524 aaKnown RBP21.97■■□□□ 1.11
CBWD3-218ENST00000622755 ABCC8Q09428 1581 aa21.96■■□□□ 1.11
CBWD3-218ENST00000622755 DNAJC5Q9H3Z4 198 aa21.9■■□□□ 1.1
CBWD3-218ENST00000622755 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
CBWD3-218ENST00000622755 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
CBWD3-218ENST00000622755 IFT140Q96RY7 1462 aa21.8■■□□□ 1.08
CBWD3-218ENST00000622755 CHIC1Q5VXU3 224 aa21.71■■□□□ 1.07
CBWD3-218ENST00000622755 POLA1P09884 1462 aaPredicted RBP21.65■■□□□ 1.06
CBWD3-218ENST00000622755 ZNF608Q9ULD9 1512 aaPredicted RBP21.61■■□□□ 1.05
CBWD3-218ENST00000622755 SOGA1O94964 1423 aa21.61■■□□□ 1.05
CBWD3-218ENST00000622755 EIF4G3O43432 1585 aaKnown RBP21.61■■□□□ 1.05
CBWD3-218ENST00000622755 CUX1P39880 1505 aa21.6■■□□□ 1.05
CBWD3-218ENST00000622755 FGD5Q6ZNL6 1462 aa21.6■■□□□ 1.05
CBWD3-218ENST00000622755 TARBP1Q13395 1621 aaKnown RBP21.6■■□□□ 1.05
CBWD3-218ENST00000622755 OSCARQ8IYS5 282 aa21.55■■□□□ 1.04
CBWD3-218ENST00000622755 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
CBWD3-218ENST00000622755 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
CBWD3-218ENST00000622755 AQRO60306 1485 aaKnown RBP eCLIP21.51■■□□□ 1.03
CBWD3-218ENST00000622755 WRNQ14191 1432 aaPredicted RBP eCLIP21.49■■□□□ 1.03
CBWD3-218ENST00000622755 TDRD9Q8NDG6 1382 aaKnown RBP21.46■■□□□ 1.03
CBWD3-218ENST00000622755 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
CBWD3-218ENST00000622755 TOP2BQ02880 1626 aa21.43■■□□□ 1.02
CBWD3-218ENST00000622755 FBLN2P98095 1184 aa21.4■■□□□ 1.02
CBWD3-218ENST00000622755 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.01
CBWD3-218ENST00000622755 GRIN2BQ13224 1484 aa21.39■■□□□ 1.01
CBWD3-218ENST00000622755 CHD1O14646 1710 aa21.37■■□□□ 1.01
CBWD3-218ENST00000622755 SYNJ1O43426 1573 aa21.37■■□□□ 1.01
CBWD3-218ENST00000622755 GAPVD1Q14C86 1478 aa21.36■■□□□ 1.01
CBWD3-218ENST00000622755 MAGI1Q96QZ7 1491 aaPredicted RBP21.35■■□□□ 1.01
CBWD3-218ENST00000622755 SNAPC4Q5SXM2 1469 aa21.35■■□□□ 1.01
CBWD3-218ENST00000622755 PBRM1Q86U86 1689 aa21.34■■□□□ 1.01
CBWD3-218ENST00000622755 CHMP7Q8WUX9 453 aaPredicted RBP21.32■■□□□ 1
CBWD3-218ENST00000622755 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
CBWD3-218ENST00000622755 SYNJ2O15056 1496 aa21.25■□□□□ 0.99
CBWD3-218ENST00000622755 TRIM41Q8WV44 630 aa21.2■□□□□ 0.98
CBWD3-218ENST00000622755 RIMBP3CA6NJZ7 1639 aa21.17■□□□□ 0.98
CBWD3-218ENST00000622755 RIMBP3BA6NNM3 1639 aa21.17■□□□□ 0.98
CBWD3-218ENST00000622755 RIMBP3Q9UFD9 1639 aa21.17■□□□□ 0.98
CBWD3-218ENST00000622755 ERICH3Q5RHP9 1530 aa21.16■□□□□ 0.98
CBWD3-218ENST00000622755 ARHGEF11O15085 1522 aa21.14■□□□□ 0.97
CBWD3-218ENST00000622755 ADAMTS12P58397 1594 aa21.13■□□□□ 0.97
CBWD3-218ENST00000622755 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
CBWD3-218ENST00000622755 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
CBWD3-218ENST00000622755 KIF27Q86VH2 1401 aa21.09■□□□□ 0.97
CBWD3-218ENST00000622755 CLASP1Q7Z460 1538 aa21.08■□□□□ 0.97
CBWD3-218ENST00000622755 CUL7Q14999 1698 aa20.99■□□□□ 0.95
CBWD3-218ENST00000622755 CYB5RLQ6IPT4 315 aa20.99■□□□□ 0.95
CBWD3-218ENST00000622755 NUP160Q12769 1436 aa20.96■□□□□ 0.95
CBWD3-218ENST00000622755 CEP170Q5SW79 1584 aa20.95■□□□□ 0.94
CBWD3-218ENST00000622755 ARAP1Q96P48 1450 aa20.93■□□□□ 0.94
CBWD3-218ENST00000622755 IGF1RP08069 1367 aa20.91■□□□□ 0.94
CBWD3-218ENST00000622755 CARMIL1Q5VZK9 1371 aa20.85■□□□□ 0.93
CBWD3-218ENST00000622755 SHROOM2Q13796 1616 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms