RNA–Protein interactions for RNA: ENST00000621150.3

TNFAIP3-211, Transcript of TNF alpha induced protein 3, humanhuman

TSL 5 BASIC

Gene TNFAIP3, Length 1,613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-211ENST00000621150 NISCHQ9Y2I1 1504 aa28.78■■■□□ 2.2
TNFAIP3-211ENST00000621150 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
TNFAIP3-211ENST00000621150 AEBP2Q6ZN18 517 aaPredicted RBP26.33■■□□□ 1.81
TNFAIP3-211ENST00000621150 CCDC180Q9P1Z9 1646 aa25.78■■□□□ 1.72
TNFAIP3-211ENST00000621150 ABCC9O60706 1549 aa25.54■■□□□ 1.68
TNFAIP3-211ENST00000621150 RB1CC1Q8TDY2 1594 aa24.42■■□□□ 1.5
TNFAIP3-211ENST00000621150 NACADO15069 1562 aa24.29■■□□□ 1.48
TNFAIP3-211ENST00000621150 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
TNFAIP3-211ENST00000621150 DCAF8L2P0C7V8 631 aa24.17■■□□□ 1.46
TNFAIP3-211ENST00000621150 MYO15BQ96JP2 1530 aa24.02■■□□□ 1.44
TNFAIP3-211ENST00000621150 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
TNFAIP3-211ENST00000621150 ZCCHC6Q5VYS8 1495 aaKnown RBP23.89■■□□□ 1.41
TNFAIP3-211ENST00000621150 DNAJC5BQ9UF47 199 aa23.8■■□□□ 1.4
TNFAIP3-211ENST00000621150 PABPN1Q86U42 306 aaKnown RBP eCLIP23.79■■□□□ 1.4
TNFAIP3-211ENST00000621150 DCAF1Q9Y4B6 1507 aa23.79■■□□□ 1.4
TNFAIP3-211ENST00000621150 BICRAQ9NZM4 1560 aa23.72■■□□□ 1.39
TNFAIP3-211ENST00000621150 SCRIBQ14160 1630 aa23.47■■□□□ 1.35
TNFAIP3-211ENST00000621150 SHROOM4Q9ULL8 1493 aa23.38■■□□□ 1.33
TNFAIP3-211ENST00000621150 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
TNFAIP3-211ENST00000621150 EIF4G1Q04637 1599 aaKnown RBP23.11■■□□□ 1.29
TNFAIP3-211ENST00000621150 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
TNFAIP3-211ENST00000621150 PLPPR3Q6T4P5 718 aa22.83■■□□□ 1.25
TNFAIP3-211ENST00000621150 EHMT2Q96KQ7 1210 aa22.46■■□□□ 1.19
TNFAIP3-211ENST00000621150 SMARCA4P51532 1647 aa22.43■■□□□ 1.18
TNFAIP3-211ENST00000621150 NCAPD3P42695 1498 aa22.41■■□□□ 1.18
TNFAIP3-211ENST00000621150 ATAD2BQ9ULI0 1458 aa22.37■■□□□ 1.17
TNFAIP3-211ENST00000621150 SMARCA2P51531 1590 aa22.33■■□□□ 1.16
TNFAIP3-211ENST00000621150 BAZ1AQ9NRL2 1556 aaPredicted RBP22.33■■□□□ 1.16
TNFAIP3-211ENST00000621150 HMGXB3Q12766 1538 aa22.28■■□□□ 1.16
TNFAIP3-211ENST00000621150 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
TNFAIP3-211ENST00000621150 MROH2BQ7Z745 1585 aa22.19■■□□□ 1.14
TNFAIP3-211ENST00000621150 BAZ1BQ9UIG0 1483 aaKnown RBP22.16■■□□□ 1.14
TNFAIP3-211ENST00000621150 ERCC6Q03468 1493 aa22.02■■□□□ 1.12
TNFAIP3-211ENST00000621150 NESP48681 1621 aa22.01■■□□□ 1.11
TNFAIP3-211ENST00000621150 SUPT5HO00267 1087 aaKnown RBP21.96■■□□□ 1.11
TNFAIP3-211ENST00000621150 WIZO95785 1651 aa21.95■■□□□ 1.11
TNFAIP3-211ENST00000621150 SENP3Q9H4L4 574 aaPredicted RBP21.93■■□□□ 1.1
TNFAIP3-211ENST00000621150 CUX2O14529 1486 aa21.93■■□□□ 1.1
TNFAIP3-211ENST00000621150 LAMC3Q9Y6N6 1575 aa21.9■■□□□ 1.1
TNFAIP3-211ENST00000621150 KCNA4P22459 653 aa21.87■■□□□ 1.09
TNFAIP3-211ENST00000621150 RSF1Q96T23 1441 aaPredicted RBP21.85■■□□□ 1.09
TNFAIP3-211ENST00000621150 KIF21AQ7Z4S6 1674 aa21.78■■□□□ 1.08
TNFAIP3-211ENST00000621150 THOC2Q8NI27 1593 aaKnown RBP21.77■■□□□ 1.08
TNFAIP3-211ENST00000621150 PDS5BQ9NTI5 1447 aa21.73■■□□□ 1.07
TNFAIP3-211ENST00000621150 CADPSQ9ULU8 1353 aa21.72■■□□□ 1.07
TNFAIP3-211ENST00000621150 DNAJC5Q9H3Z4 198 aa21.69■■□□□ 1.06
TNFAIP3-211ENST00000621150 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
TNFAIP3-211ENST00000621150 CFTRP13569 1480 aa21.53■■□□□ 1.04
TNFAIP3-211ENST00000621150 MRC2Q9UBG0 1479 aa21.53■■□□□ 1.04
TNFAIP3-211ENST00000621150 WDR62O43379 1518 aa21.5■■□□□ 1.03
TNFAIP3-211ENST00000621150 CEP164Q9UPV0 1460 aa21.49■■□□□ 1.03
TNFAIP3-211ENST00000621150 FANCD2Q9BXW9 1451 aa21.49■■□□□ 1.03
TNFAIP3-211ENST00000621150 ADRA2BP18089 450 aa21.46■■□□□ 1.03
TNFAIP3-211ENST00000621150 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
TNFAIP3-211ENST00000621150 PRDM2Q13029 1718 aa21.42■■□□□ 1.02
TNFAIP3-211ENST00000621150 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
TNFAIP3-211ENST00000621150 URB2Q14146 1524 aaKnown RBP21.31■■□□□ 1
TNFAIP3-211ENST00000621150 SLC24A1O60721 1099 aa21.27■■□□□ 1
TNFAIP3-211ENST00000621150 TOPBP1Q92547 1522 aa21.11■□□□□ 0.97
TNFAIP3-211ENST00000621150 ABCC8Q09428 1581 aa21.07■□□□□ 0.96
TNFAIP3-211ENST00000621150 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
TNFAIP3-211ENST00000621150 SLC4A1APQ9BWU0 796 aaKnown RBP21.06■□□□□ 0.96
TNFAIP3-211ENST00000621150 IFT140Q96RY7 1462 aa21.05■□□□□ 0.96
TNFAIP3-211ENST00000621150 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
TNFAIP3-211ENST00000621150 TARBP1Q13395 1621 aaKnown RBP20.94■□□□□ 0.94
TNFAIP3-211ENST00000621150 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
TNFAIP3-211ENST00000621150 EIF4G3O43432 1585 aaKnown RBP20.94■□□□□ 0.94
TNFAIP3-211ENST00000621150 POLA1P09884 1462 aaPredicted RBP20.91■□□□□ 0.94
TNFAIP3-211ENST00000621150 PPP6R1Q9UPN7 881 aa20.86■□□□□ 0.93
TNFAIP3-211ENST00000621150 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.931e-6■■■□□ 18.6
TNFAIP3-211ENST00000621150 RAD54L2Q9Y4B4 1467 aa20.83■□□□□ 0.92
TNFAIP3-211ENST00000621150 CUX1P39880 1505 aa20.83■□□□□ 0.92
TNFAIP3-211ENST00000621150 FGD5Q6ZNL6 1462 aa20.8■□□□□ 0.92
TNFAIP3-211ENST00000621150 SOGA1O94964 1423 aa20.8■□□□□ 0.92
TNFAIP3-211ENST00000621150 TRIM41Q8WV44 630 aa20.8■□□□□ 0.92
TNFAIP3-211ENST00000621150 CHD1O14646 1710 aa20.77■□□□□ 0.92
TNFAIP3-211ENST00000621150 TDRD9Q8NDG6 1382 aaKnown RBP20.74■□□□□ 0.91
TNFAIP3-211ENST00000621150 WDR97A6NE52 1622 aa20.72■□□□□ 0.91
TNFAIP3-211ENST00000621150 RIMBP3CA6NJZ7 1639 aa20.7■□□□□ 0.9
TNFAIP3-211ENST00000621150 RIMBP3BA6NNM3 1639 aa20.7■□□□□ 0.9
TNFAIP3-211ENST00000621150 RIMBP3Q9UFD9 1639 aa20.7■□□□□ 0.9
TNFAIP3-211ENST00000621150 FBLN2P98095 1184 aa20.64■□□□□ 0.9
TNFAIP3-211ENST00000621150 ARHGEF11O15085 1522 aa20.64■□□□□ 0.89
TNFAIP3-211ENST00000621150 SNAPC4Q5SXM2 1469 aa20.63■□□□□ 0.89
TNFAIP3-211ENST00000621150 PBRM1Q86U86 1689 aa20.6■□□□□ 0.89
TNFAIP3-211ENST00000621150 GRIN2BQ13224 1484 aa20.6■□□□□ 0.89
TNFAIP3-211ENST00000621150 MAGI1Q96QZ7 1491 aaPredicted RBP20.59■□□□□ 0.89
TNFAIP3-211ENST00000621150 BIVM-ERCC5R4GMW8 1640 aa20.58■□□□□ 0.89
TNFAIP3-211ENST00000621150 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.88
TNFAIP3-211ENST00000621150 TOP2BQ02880 1626 aa20.56■□□□□ 0.88
TNFAIP3-211ENST00000621150 ABCA5Q8WWZ7 1642 aa20.56■□□□□ 0.88
TNFAIP3-211ENST00000621150 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
TNFAIP3-211ENST00000621150 RTN4Q9NQC3 1192 aaKnown RBP20.55■□□□□ 0.88
TNFAIP3-211ENST00000621150 SYNJ1O43426 1573 aa20.54■□□□□ 0.88
TNFAIP3-211ENST00000621150 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
TNFAIP3-211ENST00000621150 CHMP7Q8WUX9 453 aaPredicted RBP20.53■□□□□ 0.88
TNFAIP3-211ENST00000621150 SYNJ2O15056 1496 aa20.52■□□□□ 0.87
TNFAIP3-211ENST00000621150 CLASP1Q7Z460 1538 aa20.5■□□□□ 0.87
TNFAIP3-211ENST00000621150 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
TNFAIP3-211ENST00000621150 ARAP1Q96P48 1450 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 333 ms