RNA–Protein interactions for RNA: ENST00000620770.1

MUC1-229, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best)

Gene MUC1, Length 572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-229ENST00000620770 NISCHQ9Y2I1 1504 aa32.1■■■□□ 2.73
MUC1-229ENST00000620770 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
MUC1-229ENST00000620770 ABCC9O60706 1549 aa28.38■■■□□ 2.13
MUC1-229ENST00000620770 RB1CC1Q8TDY2 1594 aa27.19■■□□□ 1.94
MUC1-229ENST00000620770 NACADO15069 1562 aa27.03■■□□□ 1.92
MUC1-229ENST00000620770 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
MUC1-229ENST00000620770 DCAF8L2P0C7V8 631 aa26.81■■□□□ 1.88
MUC1-229ENST00000620770 MYO15BQ96JP2 1530 aa26.71■■□□□ 1.87
MUC1-229ENST00000620770 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
MUC1-229ENST00000620770 DCAF1Q9Y4B6 1507 aa26.51■■□□□ 1.83
MUC1-229ENST00000620770 PABPN1Q86U42 306 aaKnown RBP eCLIP26.36■■□□□ 1.81
MUC1-229ENST00000620770 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
MUC1-229ENST00000620770 DNAJC5BQ9UF47 199 aa26.3■■□□□ 1.8
MUC1-229ENST00000620770 SCRIBQ14160 1630 aa26.11■■□□□ 1.77
MUC1-229ENST00000620770 SHROOM4Q9ULL8 1493 aa26.08■■□□□ 1.77
MUC1-229ENST00000620770 CC2D2AQ9P2K1 1620 aa25.7■■□□□ 1.71
MUC1-229ENST00000620770 EIF4G1Q04637 1599 aaKnown RBP25.69■■□□□ 1.7
MUC1-229ENST00000620770 CECR2Q9BXF3 1484 aa25.56■■□□□ 1.68
MUC1-229ENST00000620770 SMARCA4P51532 1647 aa24.94■■□□□ 1.58
MUC1-229ENST00000620770 NCAPD3P42695 1498 aa24.88■■□□□ 1.57
MUC1-229ENST00000620770 BAZ1AQ9NRL2 1556 aaPredicted RBP24.87■■□□□ 1.57
MUC1-229ENST00000620770 SMARCA2P51531 1590 aa24.86■■□□□ 1.57
MUC1-229ENST00000620770 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.57
MUC1-229ENST00000620770 HMGXB3Q12766 1538 aa24.81■■□□□ 1.56
MUC1-229ENST00000620770 MROH2BQ7Z745 1585 aa24.79■■□□□ 1.56
MUC1-229ENST00000620770 PEG3Q9GZU2 1588 aa24.68■■□□□ 1.54
MUC1-229ENST00000620770 BAZ1BQ9UIG0 1483 aaKnown RBP24.65■■□□□ 1.54
MUC1-229ENST00000620770 RSF1Q96T23 1441 aaPredicted RBP24.61■■□□□ 1.53
MUC1-229ENST00000620770 WIZO95785 1651 aa24.54■■□□□ 1.52
MUC1-229ENST00000620770 ERCC6Q03468 1493 aa24.54■■□□□ 1.52
MUC1-229ENST00000620770 CUX2O14529 1486 aa24.45■■□□□ 1.5
MUC1-229ENST00000620770 NESP48681 1621 aa24.42■■□□□ 1.5
MUC1-229ENST00000620770 LAMC3Q9Y6N6 1575 aa24.38■■□□□ 1.49
MUC1-229ENST00000620770 SUPT5HO00267 1087 aaKnown RBP24.33■■□□□ 1.49
MUC1-229ENST00000620770 TOP2AP11388 1531 aaKnown RBP24.29■■□□□ 1.48
MUC1-229ENST00000620770 THOC2Q8NI27 1593 aaKnown RBP24.24■■□□□ 1.47
MUC1-229ENST00000620770 KIF21AQ7Z4S6 1674 aa24.23■■□□□ 1.47
MUC1-229ENST00000620770 PDS5BQ9NTI5 1447 aa24.18■■□□□ 1.46
MUC1-229ENST00000620770 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
MUC1-229ENST00000620770 DNAJC5Q9H3Z4 198 aa24.07■■□□□ 1.44
MUC1-229ENST00000620770 CCDC88BA6NC98 1476 aa24■■□□□ 1.43
MUC1-229ENST00000620770 MRC2Q9UBG0 1479 aa23.98■■□□□ 1.43
MUC1-229ENST00000620770 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
MUC1-229ENST00000620770 WDR62O43379 1518 aa23.93■■□□□ 1.42
MUC1-229ENST00000620770 CFTRP13569 1480 aa23.91■■□□□ 1.42
MUC1-229ENST00000620770 FANCD2Q9BXW9 1451 aa23.89■■□□□ 1.42
MUC1-229ENST00000620770 PRDM2Q13029 1718 aa23.89■■□□□ 1.41
MUC1-229ENST00000620770 URB2Q14146 1524 aaKnown RBP23.67■■□□□ 1.38
MUC1-229ENST00000620770 TOPBP1Q92547 1522 aa23.46■■□□□ 1.35
MUC1-229ENST00000620770 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
MUC1-229ENST00000620770 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
MUC1-229ENST00000620770 IFT140Q96RY7 1462 aa23.43■■□□□ 1.34
MUC1-229ENST00000620770 ZNF608Q9ULD9 1512 aaPredicted RBP23.32■■□□□ 1.32
MUC1-229ENST00000620770 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
MUC1-229ENST00000620770 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
MUC1-229ENST00000620770 OSCARQ8IYS5 282 aa23.25■■□□□ 1.31
MUC1-229ENST00000620770 CUX1P39880 1505 aa23.23■■□□□ 1.31
MUC1-229ENST00000620770 POLA1P09884 1462 aaPredicted RBP23.23■■□□□ 1.31
MUC1-229ENST00000620770 WRNQ14191 1432 aaPredicted RBP eCLIP23.21■■□□□ 1.31
MUC1-229ENST00000620770 SYNJ1O43426 1573 aa23.15■■□□□ 1.3
MUC1-229ENST00000620770 TRIM41Q8WV44 630 aa23.13■■□□□ 1.29
MUC1-229ENST00000620770 CHD1O14646 1710 aa23.13■■□□□ 1.29
MUC1-229ENST00000620770 WDR97A6NE52 1622 aa23.12■■□□□ 1.29
MUC1-229ENST00000620770 AQRO60306 1485 aaKnown RBP eCLIP23.11■■□□□ 1.29
MUC1-229ENST00000620770 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
MUC1-229ENST00000620770 RAD54L2Q9Y4B4 1467 aa23.1■■□□□ 1.29
MUC1-229ENST00000620770 TOP2BQ02880 1626 aa23.09■■□□□ 1.29
MUC1-229ENST00000620770 SOGA1O94964 1423 aa23.08■■□□□ 1.29
MUC1-229ENST00000620770 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
MUC1-229ENST00000620770 RIMBP3CA6NJZ7 1639 aa23.04■■□□□ 1.28
MUC1-229ENST00000620770 RIMBP3BA6NNM3 1639 aa23.04■■□□□ 1.28
MUC1-229ENST00000620770 RIMBP3Q9UFD9 1639 aa23.04■■□□□ 1.28
MUC1-229ENST00000620770 TDRD9Q8NDG6 1382 aaKnown RBP22.99■■□□□ 1.27
MUC1-229ENST00000620770 ARHGEF11O15085 1522 aa22.97■■□□□ 1.27
MUC1-229ENST00000620770 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
MUC1-229ENST00000620770 PBRM1Q86U86 1689 aa22.95■■□□□ 1.26
MUC1-229ENST00000620770 MAGI1Q96QZ7 1491 aaPredicted RBP22.92■■□□□ 1.26
MUC1-229ENST00000620770 GRIN2BQ13224 1484 aa22.92■■□□□ 1.26
MUC1-229ENST00000620770 FBLN2P98095 1184 aa22.91■■□□□ 1.26
MUC1-229ENST00000620770 ABCA5Q8WWZ7 1642 aa22.87■■□□□ 1.25
MUC1-229ENST00000620770 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
MUC1-229ENST00000620770 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
MUC1-229ENST00000620770 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.25
MUC1-229ENST00000620770 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
MUC1-229ENST00000620770 CLASP1Q7Z460 1538 aa22.81■■□□□ 1.24
MUC1-229ENST00000620770 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
MUC1-229ENST00000620770 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
MUC1-229ENST00000620770 ADAMTS12P58397 1594 aa22.69■■□□□ 1.22
MUC1-229ENST00000620770 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
MUC1-229ENST00000620770 CYB5RLQ6IPT4 315 aa22.67■■□□□ 1.22
MUC1-229ENST00000620770 GRIN2AQ12879 1464 aa22.63■■□□□ 1.21
MUC1-229ENST00000620770 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
MUC1-229ENST00000620770 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
MUC1-229ENST00000620770 FHAD1B1AJZ9 1412 aa22.57■■□□□ 1.2
MUC1-229ENST00000620770 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
MUC1-229ENST00000620770 IGF1RP08069 1367 aa22.52■■□□□ 1.2
MUC1-229ENST00000620770 NUP160Q12769 1436 aa22.52■■□□□ 1.2
MUC1-229ENST00000620770 FAM9AQ8IZU1 332 aaPredicted RBP22.51■■□□□ 1.19
MUC1-229ENST00000620770 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
MUC1-229ENST00000620770 CUL7Q14999 1698 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms